View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14554_low_4 (Length: 473)
Name: NF14554_low_4
Description: NF14554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14554_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 149 - 464
Target Start/End: Complemental strand, 45593250 - 45592935
Alignment:
| Q |
149 |
caaatatatatcactatgcacacagaataaattaacataaactaaaaagacaccaaatcacacatgaagaaaacacatagtaataataacacatcatatt |
248 |
Q |
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| T |
45593250 |
caaatatacatcactatgcacacagaataaattaacataaactaaaaagacaccaaatcacacatgaagaaaacacatagtaataataacacatcatatt |
45593151 |
T |
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| Q |
249 |
ttgttgaccacaagcttgaacattgtagcattagaaaagaccaaagagtttctttggagctgttccagttgccctgtattttgcagctatctcctctgct |
348 |
Q |
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| T |
45593150 |
ttgttgaccacaagcttgaacattgtagcattagaaaagaccaaagagtttctttggagctgttccagttgccctgtattttgcagctatctcctctgct |
45593051 |
T |
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| Q |
349 |
ttgagtaaatcttcacctttctttgcctcaatcatagccttcttttcttcagctgccttgtgaagtgctgctattttgtttttcaatttctctgcatatt |
448 |
Q |
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| T |
45593050 |
ttgagtaaatcttcacctttctttgcctcaatcatagccttcttttcttcagctgccttgtgaagtgctgctattttgtttttcaatttctctgcatatt |
45592951 |
T |
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| Q |
449 |
ctccctttttcttctc |
464 |
Q |
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| T |
45592950 |
ctccctttttcttctc |
45592935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 45593424 - 45593272
Alignment:
| Q |
1 |
ccaggtttcatgatgatctgtgttttgttattcacagtgttttcattggtgtatctttcttcgccaacatctaagaatgagtgaattagt-ggtctaata |
99 |
Q |
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| T |
45593424 |
ccaggtttcatgatgatctgtgttttgttattca--gtgttttcattggtgtatctttctttgccaacatctaagaatgagtgaattagtgggtctaata |
45593327 |
T |
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| Q |
100 |
caaggactttatattgcacaaattgagtgagagttaaa--gtttttattcccaaa |
152 |
Q |
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| T |
45593326 |
caaggactttatattgcacaaattgaatgagagttaaattgtttttattcccaaa |
45593272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 353
Target Start/End: Original strand, 11750196 - 11750260
Alignment:
| Q |
289 |
ccaaagagtttctttggagctgttccagttgccctgtattttgcagctatctcctctgctttgag |
353 |
Q |
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| T |
11750196 |
ccaaggagtttctttggaacagttcctgttgcattgtgttttgcagctatttcctctgccttgag |
11750260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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