View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14554_low_5 (Length: 411)
Name: NF14554_low_5
Description: NF14554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14554_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 13 - 394
Target Start/End: Complemental strand, 5430775 - 5430394
Alignment:
| Q |
13 |
atgaaactaaacgcttgaaaagaaaggcgatggttgcttcctcgttaatcaaaccaccatccaattttccgcttctcatgtactcctttagtctcataag |
112 |
Q |
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| T |
5430775 |
atgaaactaaacgcttgaaaagaaaggcgatggttgcttcctcgttaatcaaaccaccatccaattttccgcttctcatgtactcctttagtctcataag |
5430676 |
T |
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| Q |
113 |
tgaaactgcaaattcttcatcattaccattcttaagttgcaaaatcacatcatcaatagaaacatgaacgatttcctcttctatttcaccaaccgtcctc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5430675 |
tgaaactgcaaattcttcatcattaccattcttaagttgcaaaatcacatcatcaatagaaacatgaacgatttcctcttctatttcaccaaccatcctc |
5430576 |
T |
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| Q |
213 |
gtttcactcatgaaaaattctgatttcggacttgaagtcatacttgaactgccgtcaaatcttgcattcatcatctgtctttgcaatgtaccaatctttt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5430575 |
gtttcactcatgaaaaattctgatttcggacttgaagtcatacttgaactgccgtcaaatcttgcattcatcatctgtctttgcaatgtaccaatctttt |
5430476 |
T |
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| Q |
313 |
ctctaaaatcaatagacacttcaaggcttgcaacaagcaaaactcccaacgaccggccaatatcatgtgtcatgtcttcgat |
394 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5430475 |
ctctaaaatcaatagatacttcaaggcttgcaacaagcaaaactcccaacgaccggccaatatcatgtgtcatgtcctcgat |
5430394 |
T |
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