View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14554_low_6 (Length: 370)
Name: NF14554_low_6
Description: NF14554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14554_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 53042653 - 53043022
Alignment:
| Q |
1 |
ttgagttggatgcagttctaggaggacgtgctgttcagtatcgtgaagtacagggtcatgaaactcagaagttcctgtcatatttcaaaccatgtattat |
100 |
Q |
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| T |
53042653 |
ttgagttggatgcagttctaggaggacgtgctgttcagtatcgtgaagtacagggtcatgaaactcagaagttcctgtcatatttcaaaccatgtattat |
53042752 |
T |
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| Q |
101 |
accacaagaaggtggagctgcctctggttttaagcatgttgaagctgaagaacataagacacggttgtttgtctgcaaagggaaacatgttgtgtatgtc |
200 |
Q |
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| T |
53042753 |
accacaagaaggtggagctgcctctggttttaagcatgttgaagctgaagaacataagacacggttgtttgtctgcaaagggaaacatgttgtgtatgtc |
53042852 |
T |
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| Q |
201 |
aaagaggcaagtttgatattattcccctgttattgattcattaaggtttgagacttgcacattattagtatagacaatcacacatatataaacgctagtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53042853 |
aaagaggcaagtttgatattattcccctgttattgattcattgaggtttgagacttgcacattattagtatagacaatcacacatatataaacgctagtt |
53042952 |
T |
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| Q |
301 |
tctaccttttgattaaatatttatattggttataggttccttttgctcgatcttcactcaaccatgatga |
370 |
Q |
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| T |
53042953 |
tctaccttttgattaaatatttatattggttataggttccttttgctcgatcttcactcaaccatgatga |
53043022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 15965236 - 15965023
Alignment:
| Q |
1 |
ttgagttggatgcagttctaggaggacgtgctgttcagtatcgtgaagtacagggtcatgaaactcagaagttcctgtcatatttcaaaccatgtattat |
100 |
Q |
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||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||||| ||||||||| | |||||||| || ||||||||||| |||||||| |
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| T |
15965236 |
ttgagctggatgcagctctcggaggacgtgctgttcagtatcgggaagtacagggccatgaaactgaaaagttcctttcttatttcaaaccttgtattat |
15965137 |
T |
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| Q |
101 |
accacaagaaggtggagctgcctctggttttaagcatgttgaagctgaagaacataagacacggttgtttgtctgcaaagggaaacatgttgtgtatgtc |
200 |
Q |
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||| ||||||||||||| ||| ||||||||||| |||| || |||||| |||| ||||||||||||||||| |||| ||||||||||||||| ||||| |
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| T |
15965136 |
acctcaagaaggtggagttgcttctggttttaaacatgccgaggctgaaaaacacaagacacggttgtttgtatgcagagggaaacatgttgtacatgtc |
15965037 |
T |
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| Q |
201 |
aaagaggcaagttt |
214 |
Q |
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|||||||||||||| |
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| T |
15965036 |
aaagaggcaagttt |
15965023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 15964905 - 15964864
Alignment:
| Q |
329 |
gttataggttccttttgctcgatcttcactcaaccatgatga |
370 |
Q |
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| T |
15964905 |
gttataggttccttttgctcgatcttcactaaaccatgatga |
15964864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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