View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14554_low_9 (Length: 315)
Name: NF14554_low_9
Description: NF14554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14554_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 28047322 - 28047030
Alignment:
| Q |
17 |
tatgccatgtacagaaaaaatgaaacaacannnnnnnctatcgacagaaacacaaaaaggtaatggaagtaataaatgaccttatgacttgttgaacgcg |
116 |
Q |
| |
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||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28047322 |
tatgcaatgtacagaaaaaatgaaacaacatttttttctatcgacagaaacacaaaaaggtaatggaagtaataaatgaccttatgacttgttgaacgcg |
28047223 |
T |
|
| Q |
117 |
agggctccgcaagaatcttgcaaaatgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctcaacattggttaagcattttaccgttctg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28047222 |
agggctccgcaagaatcttgcaaaatgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctcaacattggttaagcattttaccgttctg |
28047123 |
T |
|
| Q |
217 |
tcactagttaagccctgtccttgaatctttacatttttactttctacaagagaaaccgagttataaaccacaggatgacagagatgaagattt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28047122 |
tcactagttaagccctgtccttgaatctttacatttttactttctacaagagaaaccgagttataaaccacaggatgacagagatgaagattt |
28047030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 54 - 307
Target Start/End: Complemental strand, 27916721 - 27916468
Alignment:
| Q |
54 |
ctatcgacagaaacacaaaaaggtaatggaagtaataaatgaccttatgacttgttgaacgcgagggctccgcaagaatcttgcaaaatgagttgtgact |
153 |
Q |
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|||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||| ||||||||||||||| | ||| |||| ||||||||||| |
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| T |
27916721 |
ctatcgacagaaacacaacaaggtaatggaaggaaggaatgaccttatgacttgttgaacatgagggctccgcaagagttttgaaaaaagagttgtgact |
27916622 |
T |
|
| Q |
154 |
tcttcaatgtctttagcgtcgagtgaaaatgcctcaacattggttaagcattttaccgttctgtcactagttaagccctgtccttgaatctttacatttt |
253 |
Q |
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||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||| ||||| ||||||||||||||||||| |||| |
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| T |
27916621 |
tcttcaatgtctttagcttcgagtgaaaatgcctccacattggttaagcaatttactgttctgtcactaattaagtcctgtccttgaatctttacttttt |
27916522 |
T |
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| Q |
254 |
tactttctacaagagaaaccgagttataaaccacaggatgacagagatgaagat |
307 |
Q |
| |
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||| |||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
27916521 |
taccttctacaagagaaaccgagttacaaatcacaggatgacagagatgaagat |
27916468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 91 - 309
Target Start/End: Complemental strand, 28035042 - 28034824
Alignment:
| Q |
91 |
aatgaccttatgacttgttgaacgcgagggctccgcaagaatcttgcaaaatgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctcaa |
190 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
28035042 |
aatgaccttatgacttgttgaacgtgagggctccgcaagaatcttgaaaacagagttgtgacttcctcaatgtctttagcgtcgagtgaaaatgcctcca |
28034943 |
T |
|
| Q |
191 |
cattggttaagcattttaccgttctgtcactagttaagccctgtccttgaatctttacatttttactttctacaagagaaaccgagttataaaccacagg |
290 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||| ||||||| ||||||||||||||||||||| ||| |||||| |
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| T |
28034942 |
cattggttaagcattttactgttctgtcactagttaagccatgtcctcgaatctttacttttttaccgtctacaagagaaaccgagttacaaatcacagg |
28034843 |
T |
|
| Q |
291 |
atgacagagatgaagattt |
309 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
28034842 |
atgacagagatgaagattt |
28034824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 54 - 297
Target Start/End: Complemental strand, 28074460 - 28074217
Alignment:
| Q |
54 |
ctatcgacagaaacacaaaaaggtaatggaagtaataaatgaccttatgacttgttgaacgcgagggctccgcaagaatcttgcaaaatgagttgtgact |
153 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |
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| T |
28074460 |
ctattgacagaaacacatcaaggtaatggaaggaaggaatgaccttatgacttgttgaacgcgagggctctgcaagaatcttgaaaaacgagttgtgact |
28074361 |
T |
|
| Q |
154 |
tcttcaatgtctttagcgtcgagtgaaaatgcctcaacattggttaagcattttaccgttctgtcactagttaagccctgtccttgaatctttacatttt |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| |||||||||||| ||||| | ||| ||||||||||||| | | |
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| T |
28074360 |
tcttcaatgtctttagcgtcgagtgaaaatgcctccaaattggttaagcatcttactgttctgtcactaattaagtcatgttcttgaatctttacttgct |
28074261 |
T |
|
| Q |
254 |
tactttctacaagagaaaccgagttataaaccacaggatgacag |
297 |
Q |
| |
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||| |||||||||||||||||||||| ||| || |||||||||| |
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| T |
28074260 |
taccttctacaagagaaaccgagttacaaatcaaaggatgacag |
28074217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 54 - 296
Target Start/End: Complemental strand, 28017325 - 28017083
Alignment:
| Q |
54 |
ctatcgacagaaacacaaaaaggtaatggaagtaataaatgaccttatgacttgttgaacgcgagggctccgcaagaatcttgcaaaatgagttgtgact |
153 |
Q |
| |
|
|||||||||||||||||| |||||||||| || || |||||||||||||||||||||||| |||| | | |||| |||||||||||||||||||||| |
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|
| T |
28017325 |
ctatcgacagaaacacaacaaggtaatggtaggaaagaatgaccttatgacttgttgaacgtgaggattttgtaagagtcttgcaaaatgagttgtgact |
28017226 |
T |
|
| Q |
154 |
tcttcaatgtctttagcgtcgagtgaaaatgcctcaacattggttaagcattttaccgttctgtcactagttaagccctgtccttgaatctttacatttt |
253 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| |||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | || |
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| T |
28017225 |
tcttcaatagctttagcgtcgagtaaaaatgcctccacatcggttaagcattttactgttctgtcactagttaagccatgtccttgaatctttacttctt |
28017126 |
T |
|
| Q |
254 |
tactttctacaagagaaaccgagttataaaccacaggatgaca |
296 |
Q |
| |
|
||| ||||| || ||||||||||||| ||| |||| ||||||| |
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| T |
28017125 |
taccttctaaaaaagaaaccgagttacaaatcacaagatgaca |
28017083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 91 - 309
Target Start/End: Complemental strand, 28001689 - 28001472
Alignment:
| Q |
91 |
aatgaccttatgacttgttgaacgcgagggctccgcaagaatcttgcaaaatgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctcaa |
190 |
Q |
| |
|
||||||||||||||| |||| | |||||||||||||||||| ||||||| |||||| || |||||||||||||||| || ||||||||||||||| | |
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| T |
28001689 |
aatgaccttatgactccttgagtgtgagggctccgcaagaatcctgcaaaaagagttgcgagttcttcaatgtctttaacgcggagtgaaaatgcctcca |
28001590 |
T |
|
| Q |
191 |
cattggttaagcattttaccgttctgtcactagttaagccctgtccttgaatctttacatttttactttctacaagagaaaccgagttataaaccacagg |
290 |
Q |
| |
|
||||||||||||||||||| | |||| ||||||||||||| |||||||| |||||| ||||||| |||||| ||||||| || |||| ||| |||| | |
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| T |
28001589 |
cattggttaagcattttactgatctggtactagttaagccccatccttgaagctttacttttttaccttctacgagagaaa-cgtgttacaaatcacacg |
28001491 |
T |
|
| Q |
291 |
atgacagagatgaagattt |
309 |
Q |
| |
|
|||| || ||||||||||| |
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|
| T |
28001490 |
atgaaagggatgaagattt |
28001472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 87 - 273
Target Start/End: Complemental strand, 28091072 - 28090886
Alignment:
| Q |
87 |
aataaatgaccttatgacttgttgaacgcgagggctccgcaagaatcttgcaaaatgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcc |
186 |
Q |
| |
|
||||||||||||||| ||| |||||| |||||||||||||| |||||||| || |||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
28091072 |
aataaatgaccttataactccttgaacacgagggctccgcaaaaatcttgcgaagagagttgtgacttcttcaatgtctttagcacgaagtgaaaatgcc |
28090973 |
T |
|
| Q |
187 |
tcaacattggttaagcattttaccgttctgtcactagttaagccctgtccttgaatctttacatttttactttctacaagagaaacc |
273 |
Q |
| |
|
|| ||||||||||||||| |||| |||||||| ||||| || ||||| || |||| ||||| ||||||| |||| ||||||||||| |
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|
| T |
28090972 |
tccacattggttaagcatcttactgttctgtcgctagtcaaaccctggccgtgaagctttatttttttaccttctgcaagagaaacc |
28090886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 95 - 273
Target Start/End: Complemental strand, 1439753 - 1439575
Alignment:
| Q |
95 |
accttatgacttgttgaacgcgagggctccgcaagaatcttgcaaaatgagttgtgacttcttcaatgtctttagcgtcgagtgaaaatgcctcaacatt |
194 |
Q |
| |
|
||||||| ||| |||||| ||||||||||||||||||||||| ||| |||| || ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1439753 |
accttataactccttgaacacgagggctccgcaagaatcttgcgaaaagagtggtcacttcttcaatgtctttagcgcggagtgaaaatgcctcaacatt |
1439654 |
T |
|
| Q |
195 |
ggttaagcattttaccgttctgtcactagttaagccctgtccttgaatctttacatttttactttctacaagagaaacc |
273 |
Q |
| |
|
|||||||||| |||| |||||||||||||| || || |||||||||| |||||| ||||||| |||| ||||||||||| |
|
|
| T |
1439653 |
ggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttaccttctgcaagagaaacc |
1439575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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