View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14555_high_3 (Length: 390)
Name: NF14555_high_3
Description: NF14555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14555_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 12 - 371
Target Start/End: Original strand, 5942495 - 5942854
Alignment:
| Q |
12 |
tgagatgaacaagatggtgactatgcagtttactttgccttctatgtatgaaaaagtagaggaagtacctaagcctattgatgagagggttgtgataaga |
111 |
Q |
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| T |
5942495 |
tgagaagaacaagatggtgactatgcagtttactttgccttctatgtatttaaaagtagaggaagtacctaagcctattgatgagagggttgtgataaga |
5942594 |
T |
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| Q |
112 |
gaagaaggtgggaagaaatatggggtggtgacttttggaggagtggcaagtgatgaagtggtgaaggagaaagtggagaagttgaggttgtgtttggaga |
211 |
Q |
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| T |
5942595 |
gaagaaggtgggaagaaatatggggtggtgacttttggaggagtggcaagtgatgaagtggtgaaggagaaagtggagaagttgaggttgtgtttggaga |
5942694 |
T |
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| Q |
212 |
aagatggttttaaggttattggagattttttgttgggtaggtataatccacctgcgattacaattccaatgtttaggactaatgaggttatgattcctgt |
311 |
Q |
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| T |
5942695 |
aagatggttttaaggttattggagattttttgttgggtaggtataatccacctgctattacaattccaatgtttaggactaatgaggttctgattcctgt |
5942794 |
T |
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| Q |
312 |
tgaatgaacatgatgatattggatgtttgtgactttgatttatgtactttatgtttgtta |
371 |
Q |
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| T |
5942795 |
tgaatgaacatgatgatagtggatgtttgtgactttgatttatgtactttatgtttgtta |
5942854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 11 - 325
Target Start/End: Original strand, 5951298 - 5951609
Alignment:
| Q |
11 |
gtgagatgaacaagatggtgactatgcagtttactttgccttctatgtatgaaaaagtagaggaagtacctaagcctattgatgagagggttgtgataag |
110 |
Q |
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| T |
5951298 |
gtgagaggaacaagatggtgactatgcagtttattttgccatctagttatgaaaaagcagaagaagcacctaagccaactgatgaaagggttgtgataag |
5951397 |
T |
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| Q |
111 |
agaagaaggtgggaagaaatatggggtggtgacttttggaggagtggcaagtgatgaagtggtgaaggagaaagtggagaagttgaggttgtgtttggag |
210 |
Q |
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| T |
5951398 |
agaggaaggtgagaggaaatatggagtggtgaagtttagtggtgtggctagtgatgaagtggtgaaggagaaggtggagaagttgaggctgagtttggag |
5951497 |
T |
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| Q |
211 |
aaagatggttttaaggttattggagattttttgttgggtaggtataatccacctgcgattacaattccaatgtttaggactaatgaggttatgattcctg |
310 |
Q |
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| T |
5951498 |
agagatggttttaaggttattggggattttttattgggtaggtacaatcctccttgg---acacttccaatgtttaggactaatgaggttatgatcccta |
5951594 |
T |
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| Q |
311 |
ttgaatgaacatgat |
325 |
Q |
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| T |
5951595 |
ttgaatgaacatgat |
5951609 |
T |
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