View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14555_low_1 (Length: 544)
Name: NF14555_low_1
Description: NF14555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14555_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 13 - 535
Target Start/End: Complemental strand, 44365124 - 44364613
Alignment:
| Q |
13 |
acaaaaatattcgtgaaaacacacatacgctgcacatgaaaatattgaagccaaataggcataatcataacaacaacagaataaataaataaataaagca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
44365124 |
acaaaaatattcgtgaaaacacacatacgctgcacatgaaaatattgaagccaaatagacataatcataacaacag-----------aataaataaagca |
44365036 |
T |
|
| Q |
113 |
ggaagaagagagaatttagagaaaccatgtaccatgtactatttaattaaccatacccatcaaaaccatgtacaaaaagttctctaagaaacataaacta |
212 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44365035 |
gtaagaagagagaatttagagaaaccatgtaccatgtactatttaattaaccatacccatcaaaaccatgtacaaaaagttctctaagaaacataaacta |
44364936 |
T |
|
| Q |
213 |
ctcaaattgaaaggaagaaacagacagaacaaacaaagtctcactatagctaaccctaggaccatgcctgtctggatctatgtatctagttaatctctct |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
44364935 |
ctcaaattgaaaggaagaaacagacagaacaaacaaagtctcactatggctaaccctaggactatgcctgtctgaatctatgtatctagttaatctctct |
44364836 |
T |
|
| Q |
313 |
ctaagaatgactgagaaggatagtcctctctgccaatccaagaggtgaacgagattgaagacgcttcacatctttgagtctcctcatatataactctgcc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44364835 |
ctaagaatgactgagaaggatagtcctctctgccaatccaagaggtgaacgagattgaagacgcttcacatctttgagtctcctcatatataactctgcc |
44364736 |
T |
|
| Q |
413 |
tccaatgatggttgtttgattttctcgatttcttccttgattttgatcacttggctatgaacagcaagacctgcatacacctcctcatcactcttgttgt |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44364735 |
tccaatgatggttgtttgattttctcgatttcttccttgattttgatcacttggctatgaacagcaagacctgcatacacctcctcatcactcttgttgt |
44364636 |
T |
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| Q |
513 |
tgttgctcttgaattccatcttc |
535 |
Q |
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||||||||||||||||||||||| |
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| T |
44364635 |
tgttgctcttgaattccatcttc |
44364613 |
T |
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