View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14555_low_11 (Length: 227)
Name: NF14555_low_11
Description: NF14555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14555_low_11 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 227
Target Start/End: Complemental strand, 9070411 - 9070268
Alignment:
| Q |
84 |
ttttttcctagtaaaactttaacgaaatcagttataattatataatcctaatgcatcctcgtttttta--ccttgcaatcaactttgcaagttcccacaa |
181 |
Q |
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| T |
9070411 |
tttttccctagaaagactttaacaaaatcagttatgattatataatcctaatgcacactcgtttttttttccttgcaaccga-tttgcaagtttctaca- |
9070314 |
T |
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| Q |
182 |
ttaaggaactaccggttctttttattgtgatatcatcaacacaaat |
227 |
Q |
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| T |
9070313 |
ttgagaaactaccggttcattttattgtgataacatcatcacaaat |
9070268 |
T |
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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 9063854 - 9063818
Alignment:
| Q |
177 |
cacaattaaggaactaccggttctttttattgtgata |
213 |
Q |
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| T |
9063854 |
cacaattaaggaactaccggttctttttattgtgata |
9063818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 9289431 - 9289484
Alignment:
| Q |
174 |
tcccacaattaaggaactaccggttctttttattgtgatatcatcaacacaaat |
227 |
Q |
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| T |
9289431 |
tcccacaattaaggaactaccaattctttatgttgtgatagcatcaacacaaat |
9289484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 7610284 - 7610361
Alignment:
| Q |
145 |
ttttttaccttgcaatcaactttgcaag-ttcccacaattaaggaactaccggttctttttattgtgatatcatcaac |
221 |
Q |
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| T |
7610284 |
tttttttccttgcaaccgatttagcaagcttcccgcaattaaggaactatcatttctttttattgtgataccatcaac |
7610361 |
T |
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