View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14555_low_2 (Length: 457)
Name: NF14555_low_2
Description: NF14555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14555_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 19 - 445
Target Start/End: Complemental strand, 53491649 - 53491223
Alignment:
| Q |
19 |
gcatttatatttttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgact |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
53491649 |
gcatttatatttttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcaact |
53491550 |
T |
|
| Q |
119 |
caagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaata |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491549 |
caagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaata |
53491450 |
T |
|
| Q |
219 |
cgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaagg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491449 |
cgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaagg |
53491350 |
T |
|
| Q |
319 |
atttagtaaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491349 |
atttagtaaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaa |
53491250 |
T |
|
| Q |
419 |
ataaatcacttcaatttttcacaggtt |
445 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
53491249 |
ataaatcacttcaatttttcacaggtt |
53491223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 445
Target Start/End: Complemental strand, 53499242 - 53498819
Alignment:
| Q |
19 |
gcatttatatttttgtccgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgact |
118 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
53499242 |
gcatttatattttagtccgcttatttaacagattggagcaatggtgatggttcatggcgatgacaagggattggtgctacctcctaaagtagcatcaact |
53499143 |
T |
|
| Q |
119 |
caagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaata |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
53499142 |
caagtcattgtgattccagtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgctgtgtgaagca-aaaata |
53499044 |
T |
|
| Q |
219 |
cgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaagg |
318 |
Q |
| |
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||||||||||||||||||||||||| || |||||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||| |||||| || |
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| T |
53499043 |
cgtgctgagttagattctagagatagctactctcctgaaaagaagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatgg |
53498944 |
T |
|
| Q |
319 |
atttagtaaataagcaggttatctatgttgtcttgttgttgctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaa |
418 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| | |||||||||||||| ||||| |
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| T |
53498943 |
atttagaaaataaacaggttatctatgttgtcctgttgttgctcttatattct--cacatgtcattttgcttctaccctgtatgttcaatgagacaccaa |
53498846 |
T |
|
| Q |
419 |
ataaatcacttcaatttttcacaggtt |
445 |
Q |
| |
|
|||||||||||||||||| |||||||| |
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|
| T |
53498845 |
ataaatcacttcaattttgcacaggtt |
53498819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 44 - 390
Target Start/End: Complemental strand, 16070303 - 16069958
Alignment:
| Q |
44 |
taacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattccagtgcctt |
143 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
16070303 |
taacagattggagtgatggtgatggttcatggtgatgacaagggattggtgctaccgcctaaagtagcatcaactcaagtcattgtgattccagtgcctt |
16070204 |
T |
|
| Q |
144 |
acaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagata |
243 |
Q |
| |
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||||| | |||||| | |||||||| ||||| ||||||||||| | ||||| |||||| |||||| ||||||| ||||| ||||||||||||||||||| |
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| T |
16070203 |
acaaaaacgttgattgtgaaggaatcaatgacgcttgtaaagcagccgtgaagatgttgcgtgaag-aaaaaattcgtgccgagttagattctagagata |
16070105 |
T |
|
| Q |
244 |
actgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatcta |
343 |
Q |
| |
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||| ||||| |||||| ||||||||||| |||||| |||||||||||||| ||| | |||||||||||| ||||| ||||| ||||||||||||||| | |
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| T |
16070104 |
actattctcttgaaagaaagtattctgaatgggaaatgaaaggtgtccctttaatggttgaaattgggctaaagggtttaggaaataagcaggttattaa |
16070005 |
T |
|
| Q |
344 |
tgttgtcttgttgttgctcttatattcttacatatgtcattttgctt |
390 |
Q |
| |
|
|||||| | || |||| ||| ||||||| ||||||||||| ||||| |
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|
| T |
16070004 |
tgttgttatattattgcacttgtattctttcatatgtcattatgctt |
16069958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 304
Target Start/End: Complemental strand, 53516516 - 53516478
Alignment:
| Q |
266 |
ttctgattgggaattgaaaggtgtccctctaaggattga |
304 |
Q |
| |
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|||||| |||||| ||||||||||||||||||||||||| |
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| T |
53516516 |
ttctgaatgggaaatgaaaggtgtccctctaaggattga |
53516478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 36 - 337
Target Start/End: Original strand, 45355140 - 45355440
Alignment:
| Q |
36 |
cgcttttttaacagattggagcgatggtgatggttcatggtgatgacaagggattggtgctacctcctaaagtagcatcgactcaagtcattgtgattcc |
135 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| |
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|
| T |
45355140 |
cgctttttcaacagattggggtgatggtgatggttcatggtgatgacaagggattggtgctgccacctaaagtagcatcagttcaagtcattgtgattcc |
45355239 |
T |
|
| Q |
136 |
agtgccttacaaagatgttgatactcaaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattc |
235 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||| | |||| ||||||||||||||||||| ||||| | ||| |||||||||| |||| | |
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|
| T |
45355240 |
tgtgccttacaaagatgctgatactcaaggaatctttgatgcctgtaccgcaactgtgaatatgttgttggaagc-aggaattcgtgctgagtcagatgc |
45355338 |
T |
|
| Q |
236 |
tagagataactgttctcctgaaaggaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcag |
335 |
Q |
| |
|
||||| |||| |||||||| | |||| |||||| | |||||| |||||||||| ||||||||||||||||| ||||| |||||||||| |||||||||| |
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| T |
45355339 |
cagagacaactattctcctggatggaaatattctcagtgggaaatgaaaggtgttcctctaaggattgaaatcgggcccaaggatttagcaaataagcag |
45355438 |
T |
|
| Q |
336 |
gt |
337 |
Q |
| |
|
|| |
|
|
| T |
45355439 |
gt |
45355440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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