View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14555_low_4 (Length: 442)

Name: NF14555_low_4
Description: NF14555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14555_low_4
NF14555_low_4
[»] chr6 (8 HSPs)
chr6 (40-428)||(33710912-33711302)
chr6 (224-419)||(21198823-21199019)
chr6 (204-347)||(21313702-21313845)
chr6 (205-322)||(21173086-21173206)
chr6 (205-248)||(21166711-21166754)
chr6 (207-270)||(20998350-20998416)
chr6 (205-245)||(21218114-21218154)
chr6 (253-347)||(21108810-21108904)
[»] scaffold0060 (1 HSPs)
scaffold0060 (230-410)||(21709-21888)
[»] chr8 (1 HSPs)
chr8 (205-322)||(24943669-24943786)
[»] scaffold0016 (1 HSPs)
scaffold0016 (207-347)||(70767-70906)
[»] scaffold0272 (2 HSPs)
scaffold0272 (252-347)||(8717-8811)
scaffold0272 (208-268)||(3737-3797)
[»] chr1 (3 HSPs)
chr1 (80-173)||(11331221-11331314)
chr1 (80-173)||(11489242-11489335)
chr1 (74-147)||(39140681-39140754)
[»] chr7 (2 HSPs)
chr7 (74-193)||(25731471-25731590)
chr7 (127-191)||(44192094-44192158)
[»] chr4 (1 HSPs)
chr4 (119-193)||(40424541-40424615)
[»] chr5 (1 HSPs)
chr5 (291-347)||(13119797-13119853)


Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 40 - 428
Target Start/End: Complemental strand, 33711302 - 33710912
Alignment:
Q  40 acttaatacattaaacaataagataagattatccggaaaaatttacaggttaataagttggatttaaatatggtctcggataaaatatgatgacataatt 139  Q
    |||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| || || |||||||| |||||    
T  33711302 acttaatatattaaacaataagataagactatacggaaaaatttacaggttaataagttggatttaaatatggtctcgggtagaacatgatgacgtaatt 33711203  T
Q  140 tgattcatatagtcaacctcatttaataagataagatctggttgttgttgttgt---agaggagcacatccaatggataaatgctttcttattgtaagat 236  Q
    |||| ||||||||||| | ||||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||| | ||||||||||    
T  33711202 tgatccatatagtcaatcccatttaataagataagacctggttgttgttgttgttgtagaggagcacatccaatggataaatgctttatgattgtaagat 33711103  T
Q  237 tatgagttgttactaaattcttcttttatgtttcatctcgacttaaatataaagaagcgagaaaaggggcactaaaaatagtcccatcttaactaaaaga 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  33711102 tatgagttgttactaaattcttcttttatgtttcatctcgacttaaatataaagaagcgagaaaa-gagcactaaaaatagtcccatcttaactaaaaga 33711004  T
Q  337 aatgctatgatttacttatatacttcaaaatatgtaccttgtttaaagttgagctagaggttgtttgaatgttcgaaattgttcaaccttcc 428  Q
    ||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33711003 aatgctatgatttgcttatatacttcaaaatatataacttgtttaaagttgagctagaggttgtttgaatgttcgaaattgttcaatcttcc 33710912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 224 - 419
Target Start/End: Complemental strand, 21199019 - 21198823
Alignment:
Q  224 cttattgtaagattatgagttgttactaaattcttcttttatgtttcatctcgacttaaatataaagaagcgagaaaaggggcactaaaaatagtcccat 323  Q
    ||||| ||||||||||||||||||| | |||| ||||||||||||||||||| ||| |||  |||| |||| |||||  ||||||||||||||||| ||     
T  21199019 cttatagtaagattatgagttgttaatgaatttttcttttatgtttcatctcaactgaaacttaaaaaagcaagaaattgggcactaaaaatagtctcac 21198920  T
Q  324 cttaactaaaagaaatgctatgat-ttacttatatacttcaaaatatgtaccttgtttaaagttgagctagaggttgtttgaatgttcgaaattgtt 419  Q
    ||  ||||||| |||||||||||| || ||||||||||||||  |||| |||||||| ||||||||||  ||| |  |||||||||| |||||||||    
T  21198919 ctcgactaaaaaaaatgctatgatattgcttatatacttcaaggtatgcaccttgttaaaagttgagcctgagttgatttgaatgtttgaaattgtt 21198823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 204 - 347
Target Start/End: Complemental strand, 21313845 - 21313702
Alignment:
Q  204 atccaatggataaatgctttcttattgtaagattatgagttgttactaaattcttcttttatgtttcatctcgacttaaatataaagaagcgagaaaagg 303  Q
    ||||||| |||||| | || ||||| | || ||||||| | |||||| |||||||||||||||||||| ||||||| ||| |||||||||| |||||| |    
T  21313845 atccaattgataaacgtttgcttataggaaaattatgaatcgttactgaattcttcttttatgtttcaactcgactgaaacataaagaagcaagaaaaag 21313746  T
Q  304 ggcactaaaaatagtcccatcttaactaaaagaaatgctatgat 347  Q
    || |||||| ||||||||| ||  ||  ||| ||||||||||||    
T  21313745 ggaactaaatatagtcccacctggacagaaacaaatgctatgat 21313702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 205 - 322
Target Start/End: Complemental strand, 21173206 - 21173086
Alignment:
Q  205 tccaatggataaat---gctttcttattgtaagattatgagttgttactaaattcttcttttatgtttcatctcgacttaaatataaagaagcgagaaaa 301  Q
    ||||||||||||||   |||| ||||| ||| ||||||||||||||  | ||||||||||||||||| |||||||| | |||  ||||||||| ||||||    
T  21173206 tccaatggataaattatgcttgcttatggtatgattatgagttgttgttgaattcttcttttatgttccatctcgattgaaaattaaagaagcaagaaaa 21173107  T
Q  302 ggggcactaaaaatagtccca 322  Q
    ||| ||||||| ||| |||||    
T  21173106 gggacactaaatataatccca 21173086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 248
Target Start/End: Complemental strand, 21166754 - 21166711
Alignment:
Q  205 tccaatggataaatgctttcttattgtaagattatgagttgtta 248  Q
    |||||||| ||||||||||||||||||||||||||||| |||||    
T  21166754 tccaatgggtaaatgctttcttattgtaagattatgagctgtta 21166711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 20998350 - 20998416
Alignment:
Q  207 caatggataaatgctttcttattgtaagattatga---gttgttactaaattcttcttttatgtttc 270  Q
    ||||||||| |||||| ||||| ||||||||||||   |||||| |||||||||||||||| |||||    
T  20998350 caatggatagatgcttgcttatagtaagattatgagttgttgttgctaaattcttcttttaagtttc 20998416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 21218154 - 21218114
Alignment:
Q  205 tccaatggataaatgctttcttattgtaagattatgagttg 245  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  21218154 tccaatggataaatgcttacttatagtaagattatgagttg 21218114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 347
Target Start/End: Complemental strand, 21108904 - 21108810
Alignment:
Q  253 attcttcttttatgtttcatctcgacttaaatataaagaagcgagaaaaggggcactaaaaatagtcccatcttaactaaaagaaatgctatgat 347  Q
    |||||| ||||| ||||||||| |||| ||| ||||||||   |||||||||||||  |||||||||||| ||  | | ||||||| ||||||||    
T  21108904 attcttgttttacgtttcatcttgactgaaacataaagaaaaaagaaaaggggcacagaaaatagtcccacctctaatgaaagaaaggctatgat 21108810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 230 - 410
Target Start/End: Original strand, 21709 - 21888
Alignment:
Q  230 gtaagattatgagttgttactaaattcttcttttatgtttcatctcgacttaaatataaagaagcgagaaaaggggcactaaaaatagtcccatcttaac 329  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||| | ||||||||||||||| ||||||||| || |||    
T  21709 gtaagattatgagttgttactaaattgttcttttatgtttcatctcgacttaaacttaaagaagcaataaaaggggcactaaatatagtcccacctcaac 21808  T
Q  330 taaaagaaatgctatgatttacttatatacttcaaaatatgtaccttgtttaaagttgagctagaggttgtttgaatgttc 410  Q
    ||||||||||| |||||||| || ||||||||||||||||||||| | |||||||||| |   | ||||||||||||||||    
T  21809 taaaagaaatg-tatgatttgctcatatacttcaaaatatgtaccatatttaaagttgggtgtggggttgtttgaatgttc 21888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 205 - 322
Target Start/End: Complemental strand, 24943786 - 24943669
Alignment:
Q  205 tccaatggataaatgctttcttattgtaagattatgagttgttactaaattcttcttttatgtttcatctcgacttaaatataaagaagcgagaaaaggg 304  Q
    |||||||||||||||||| ||||| ||| |||||||||||||| || ||||||||||||||||| |||||||||| |||  ||||||||| |||||||||    
T  24943786 tccaatggataaatgcttgcttatggtatgattatgagttgttgctgaattcttcttttatgttccatctcgactgaaacttaaagaagcaagaaaaggg 24943687  T
Q  305 gcactaaaaatagtccca 322  Q
     |||||||||||||||||    
T  24943686 acactaaaaatagtccca 24943669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 207 - 347
Target Start/End: Original strand, 70767 - 70906
Alignment:
Q  207 caatggataaatgctttcttattgtaagattatgagttgttactaaattcttcttttatgtttcatctcgacttaaatataaagaagcgagaaaaggggc 306  Q
    |||||||||||||||| ||| | ||||||||||||||||||  | | ||||||||||||||| |||||| |||||||  |||| |||| |||||||  ||    
T  70767 caatggataaatgcttgcttgtagtaagattatgagttgttgatgagttcttcttttatgttccatctcaacttaaacttaaa-aagcaagaaaagatgc 70865  T
Q  307 actaaaaatagtcccatcttaactaaaagaaatgctatgat 347  Q
    |||||||||||| ||| ||  ||  ||| ||||||||||||    
T  70866 actaaaaatagttccacctcgaccgaaaaaaatgctatgat 70906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 347
Target Start/End: Original strand, 8717 - 8811
Alignment:
Q  252 aattcttcttttatgtttcatctcgacttaaatataaagaagcgagaaaaggggcactaaaaatagtcccatcttaactaaaagaaatgctatgat 347  Q
    |||||||||||||||||||||||||||| |||  |||| || |  ||||| | |||||||||||||||||| ||  ||  ||||||||||||||||    
T  8717 aattcttcttttatgtttcatctcgactaaaacttaaa-aaacatgaaaatgagcactaaaaatagtcccacctcgaccgaaagaaatgctatgat 8811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 268
Target Start/End: Original strand, 3737 - 3797
Alignment:
Q  208 aatggataaatgctttcttattgtaagattatgagttgttactaaattcttcttttatgtt 268  Q
    |||| |||||| ||| ||||| |||||||| ||||||||| || |||||||||||||||||    
T  3737 aatgaataaatacttgcttatagtaagattttgagttgttgctgaattcttcttttatgtt 3797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 173
Target Start/End: Complemental strand, 11331314 - 11331221
Alignment:
Q  80 atttacaggttaataagttggatttaaatatggtctcggataaaatatgatgacataatttgattcatatagtcaacctcatttaataagataa 173  Q
    ||||| |||||||||||||||||||||||||||| |  ||| ||| || ||||  ||||||||| |||| |||| | |||||||| | ||||||    
T  11331314 atttagaggttaataagttggatttaaatatggtttatgatgaaacattatgatgtaatttgatccataaagtcgatctcatttactcagataa 11331221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 173
Target Start/End: Complemental strand, 11489335 - 11489242
Alignment:
Q  80 atttacaggttaataagttggatttaaatatggtctcggataaaatatgatgacataatttgattcatatagtcaacctcatttaataagataa 173  Q
    ||||| |||||||||||||||||||||||||||| |  ||| ||| || ||||  ||||||||| |||| |||| | |||||||| | ||||||    
T  11489335 atttagaggttaataagttggatttaaatatggtttatgatgaaacattatgatgtaatttgatccataaagtcgatctcatttactcagataa 11489242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 39140681 - 39140754
Alignment:
Q  74 ggaaaaatttacaggttaataagttggatttaaatatggtctcggataaaatatgatgacataatttgattcat 147  Q
    ||||||||||| |||||||| ||||||||  ||||||||| || |||| || || ||| | |||||||||||||    
T  39140681 ggaaaaatttagaggttaattagttggatccaaatatggtttcagatagaacattatggcgtaatttgattcat 39140754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 193
Target Start/End: Complemental strand, 25731590 - 25731471
Alignment:
Q  74 ggaaaaatttacaggttaataagttggatttaaatatggtctcggataaaatatgatgacataatttgattcatatagtcaacctcatttaataagataa 173  Q
    ||||| |||||||||||||||| ||||||  ||||||||| ||| ||| || || ||| | |||||||||  || |||   ||||| ||||||  |||||    
T  25731590 ggaaagatttacaggttaataaattggatccaaatatggtttcgaatagaacattatggcgtaatttgatcaatgtagcagacctcgtttaatgggataa 25731491  T
Q  174 gatctggttgttgttgttgt 193  Q
    ||  ||||||||||||||||    
T  25731490 gacttggttgttgttgttgt 25731471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 44192158 - 44192094
Alignment:
Q  127 tgatgacataatttgattcatatagtcaacctcatttaataagataagatctggttgttgttgtt 191  Q
    |||||||||  |||||| || ||||||||||||| ||||| | ||||||| || |||||||||||    
T  44192158 tgatgacattgtttgatacaaatagtcaacctcacttaatgatataagatttgattgttgttgtt 44192094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 40424541 - 40424615
Alignment:
Q  119 ataaaatatgatgacataatttgattcatatagtcaacctcatttaataagataagatctggttgttgttgttgt 193  Q
    ||||||||| ||||| |||||| ||  || ||||| |||||||||| || |||||||  ||||||||||||||||    
T  40424541 ataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgttgttgttgt 40424615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 347
Target Start/End: Complemental strand, 13119853 - 13119797
Alignment:
Q  291 aagcgagaaaaggggcactaaaaatagtcccatcttaactaaaagaaatgctatgat 347  Q
    |||| |||||||||||||||||||| || ||| ||  || |||||||||||||||||    
T  13119853 aagcaagaaaaggggcactaaaaattgttccacctcgaccaaaagaaatgctatgat 13119797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University