View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14555_low_7 (Length: 350)
Name: NF14555_low_7
Description: NF14555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14555_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 32 - 350
Target Start/End: Original strand, 49769973 - 49770291
Alignment:
| Q |
32 |
ttgatgaattaaaattgttttgtactagtccaaaggtccatatatagttcactacctattaagtccaaatggtcacatgcccgaaaacgattatgatccg |
131 |
Q |
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| T |
49769973 |
ttgatgaattaaaattgttttgtactagtccaaaggtccatatatagttcactacctattaagtccaaatggtcacatgcccgaacacgattatgatccg |
49770072 |
T |
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| Q |
132 |
gtctagtagccttcgatatcttccaatcaaacttcaatggctaccttgggactcgccgctccgcaatgcctcaatgactcgtaacaaatcattggaactg |
231 |
Q |
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| T |
49770073 |
gtctagtagccttggatatcttccaatcaaactttaatggctaccttgggactcgccgctccgcaatgcctcaatgactcgtaacaaatcattggaactg |
49770172 |
T |
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| Q |
232 |
atgaaacgatgcatgtaacgacttcccatcaagtctttaactccatatgacaaccttgttaagagtgtctttcatcacaaatgcaacacactatctatcc |
331 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49770173 |
atgaaacgatgcatgtaacgacttctcatcaagtctttaactccatacgacaaccttgataagagtgtctttcatcacaaatgcaacacactatctatcc |
49770272 |
T |
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| Q |
332 |
cttctatacctctctcact |
350 |
Q |
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||||||||||||||||||| |
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| T |
49770273 |
cttctatacctctctcact |
49770291 |
T |
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