View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14556_high_1 (Length: 671)

Name: NF14556_high_1
Description: NF14556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14556_high_1
NF14556_high_1
[»] chr2 (1 HSPs)
chr2 (19-652)||(26425218-26425850)


Alignment Details
Target: chr2 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 19 - 652
Target Start/End: Complemental strand, 26425850 - 26425218
Alignment:
Q  19 gatttgatgcagttgcaagcagcttttttatcctcagatgttgatacagctgatgcaagagctttagctccagagcaacatgcagctggtggttgtccac 118  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26425850 gatttgatgcagttgcaagcagcctttttatcctcagatgttgatacagctgatgctagagctttagctccagagcaacatgcagctggtggttgtccac 26425751  T
Q  119 ttccactaaccaaatagctcacacaaggtttcaagtccttaatcacatcactgcatgaaattgcagcctctgaatttgaggcaacaaagatgagaagcac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26425750 ttccactaaccaaatagctcacacaaggtttcaagtccttaatcacatcactgcatgaaattgcagcctctgaatttgaggcaacaaagatgagaagcac 26425651  T
Q  219 aagagcagaaaatgcaattaaagaagatttcatggctacttaatttatgaagatttcctgaatttgcattggttgtttttcatcatttataggagtttaa 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| |||||||||||||||||||||||||    
T  26425650 aagagcagaaaatgcaattaaagaagatttcatggctacttaatttatcaagttttcctgaatctgcattggttatttttcatcatttataggagtttaa 26425551  T
Q  319 aaggaagctaaaatatgcaagtaaagtagnnnnnnnnattaggtgaatgtggtgtattgcaagaaagaagaagtatatcattttgatatcttttggattt 418  Q
    |||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26425550 aaggaagctaaaatatgcaagtaaagtag-tttttttattaggtgaatgtggtgtattgcaagaaagaagaagtatatcattttgatatcttttggattt 26425452  T
Q  419 tgtcaaaattcaaggttaggtggaagtagtgaagaaggggttattcattttcaacaagtaaaataagattgcaaattcatgcaaactattatttgctttc 518  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26425451 tgtcaaaattcaaggttaggtggaagtagtgaagaagggtttattcattttcaacaagtaaaataagattgcaagttcatgcaaactattatttgctttc 26425352  T
Q  519 atattttttgtttctccaagaatttgatcacttaaccttctctaaagaaagaaaactataaagtgtactagaagtaaacatttagaggatctctaatatt 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26425351 atattttttgtttctccaagaatttgatcacttaaccttctctaaagaaagaaaactataaagtgtactagaagtaaacatttagaggatctctaatatt 26425252  T
Q  619 gaatactatgagattttgttaatttctttttatt 652  Q
    ||||||||||||||||||||||||||||||||||    
T  26425251 gaatactatgagattttgttaatttctttttatt 26425218  T

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