View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14556_high_10 (Length: 354)
Name: NF14556_high_10
Description: NF14556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14556_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 6 - 338
Target Start/End: Complemental strand, 39955983 - 39955651
Alignment:
| Q |
6 |
aaatgaaataaacatagaagaagaagagaaagctatcaaagagagacgattttatttgcatccatcgccgaggtctaaagcaagtggcttcaatgaacca |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39955983 |
aaatgaaataaacatagaagaagaagagaaagctatcaaagagagacgattttatttgcatccatcaccgaggtctaaagcaagtggcttcaatgaacca |
39955884 |
T |
|
| Q |
106 |
gaattgcttaacttgtttcccctggcatctcctaaggcatgtgagaatgtatgaatatgatcttgaggatgcaactattttaccttatatttatcaagta |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39955883 |
gaattgcttaacttgtttcccctggcatctcctaaggcatgtgagaaagtatgaatatgatcttgaggatgcaactattttaccttatatttatcaagta |
39955784 |
T |
|
| Q |
206 |
tgtaatgacaaatcgctctcaagaatacaagttcaaatttcattggaataatcatttatcaagtttttatttatgtccagaccaaattgtatattatcaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39955783 |
tgtaatgacaaatcgctctcaagaatacaagttcaaatttcattggaataatcatttatcaaagttttatttatgtccagaccaaattgcatattatcaa |
39955684 |
T |
|
| Q |
306 |
ggtctcttttttctaaaaaccggagttaaaatt |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
39955683 |
ggtctcttttttctaaaaaccggagttaaaatt |
39955651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University