View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14556_high_12 (Length: 342)

Name: NF14556_high_12
Description: NF14556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14556_high_12
NF14556_high_12
[»] chr7 (20 HSPs)
chr7 (185-323)||(6239745-6239883)
chr7 (122-184)||(9865579-9865642)
chr7 (122-184)||(45288075-45288138)
chr7 (122-184)||(45291411-45291474)
chr7 (122-185)||(20081577-20081641)
chr7 (122-184)||(17729973-17730036)
chr7 (122-190)||(10344610-10344679)
chr7 (122-184)||(4694723-4694786)
chr7 (122-184)||(8276012-8276075)
chr7 (128-184)||(4596867-4596924)
chr7 (147-184)||(37167033-37167070)
chr7 (122-185)||(9080375-9080439)
chr7 (147-185)||(11951279-11951317)
chr7 (122-184)||(4542074-4542137)
chr7 (147-184)||(4860992-4861029)
chr7 (122-184)||(10431386-10431449)
chr7 (147-184)||(11826393-11826430)
chr7 (122-184)||(26556510-26556573)
chr7 (266-320)||(41615651-41615707)
chr7 (152-184)||(13450733-13450765)
[»] chr4 (41 HSPs)
chr4 (217-318)||(40087982-40088083)
chr4 (122-185)||(12782105-12782169)
chr4 (128-184)||(27013229-27013287)
chr4 (184-320)||(27258462-27258598)
chr4 (122-185)||(44809841-44809905)
chr4 (129-184)||(52007375-52007431)
chr4 (122-184)||(29323979-29324042)
chr4 (122-176)||(40794200-40794255)
chr4 (122-184)||(15430702-15430766)
chr4 (122-184)||(15437316-15437380)
chr4 (128-184)||(24045000-24045057)
chr4 (122-184)||(44164001-44164065)
chr4 (122-184)||(19819950-19820014)
chr4 (122-184)||(3718336-3718399)
chr4 (122-176)||(21418987-21419042)
chr4 (128-184)||(27677908-27677966)
chr4 (122-185)||(15431163-15431227)
chr4 (122-185)||(15437777-15437841)
chr4 (128-184)||(19826701-19826759)
chr4 (122-179)||(34320781-34320839)
chr4 (147-185)||(38284378-38284416)
chr4 (128-184)||(53010401-53010458)
chr4 (262-320)||(21201322-21201380)
chr4 (218-316)||(35945533-35945631)
chr4 (147-184)||(34018662-34018699)
chr4 (147-184)||(48416411-48416448)
chr4 (204-308)||(2915894-2915998)
chr4 (122-184)||(35509201-35509262)
chr4 (122-184)||(14571026-14571089)
chr4 (122-185)||(27691961-27692026)
chr4 (231-317)||(44343902-44343988)
chr4 (122-184)||(3798733-3798796)
chr4 (122-184)||(5669628-5669691)
chr4 (14-51)||(5721808-5721845)
chr4 (122-184)||(18910604-18910667)
chr4 (122-184)||(33410899-33410962)
chr4 (147-184)||(40617787-40617824)
chr4 (147-184)||(48636709-48636746)
chr4 (147-184)||(52531796-52531833)
chr4 (129-184)||(5680469-5680525)
chr4 (122-187)||(19865580-19865646)
[»] chr6 (20 HSPs)
chr6 (217-311)||(25437009-25437103)
chr6 (122-184)||(10289186-10289249)
chr6 (122-184)||(28666113-28666176)
chr6 (224-311)||(25462001-25462088)
chr6 (146-184)||(12981150-12981188)
chr6 (147-184)||(2378435-2378472)
chr6 (147-184)||(15543215-15543252)
chr6 (122-169)||(20181288-20181336)
chr6 (122-169)||(22154655-22154703)
chr6 (122-184)||(9953036-9953099)
chr6 (147-185)||(22463514-22463552)
chr6 (147-184)||(5739153-5739190)
chr6 (147-184)||(9314767-9314804)
chr6 (147-184)||(11188798-11188835)
chr6 (147-184)||(21633551-21633588)
chr6 (14-51)||(23379650-23379687)
chr6 (14-51)||(23388989-23389026)
chr6 (147-184)||(28116940-28116977)
chr6 (147-184)||(28229800-28229837)
chr6 (147-184)||(30654648-30654685)
[»] chr1 (21 HSPs)
chr1 (130-184)||(21019313-21019367)
chr1 (122-184)||(2404722-2404785)
chr1 (130-184)||(41059178-41059234)
chr1 (122-184)||(45961644-45961707)
chr1 (134-185)||(21108342-21108394)
chr1 (122-188)||(42021717-42021784)
chr1 (122-183)||(27537150-27537212)
chr1 (147-184)||(45940621-45940658)
chr1 (146-185)||(22460405-22460444)
chr1 (201-320)||(39312052-39312171)
chr1 (147-185)||(28110282-28110320)
chr1 (122-184)||(2793299-2793362)
chr1 (147-184)||(37184746-37184783)
chr1 (147-184)||(47708780-47708817)
chr1 (122-184)||(29644245-29644308)
chr1 (146-185)||(49147112-49147151)
chr1 (146-184)||(22454281-22454319)
chr1 (14-51)||(2793425-2793462)
chr1 (147-184)||(3088698-3088735)
chr1 (147-184)||(20398067-20398104)
chr1 (147-184)||(23022806-23022843)
[»] chr5 (27 HSPs)
chr5 (222-320)||(624401-624500)
chr5 (122-184)||(7270241-7270304)
chr5 (130-184)||(21827985-21828041)
chr5 (122-184)||(14016973-14017036)
chr5 (122-184)||(28788338-28788401)
chr5 (122-184)||(21336678-21336742)
chr5 (129-184)||(17747617-17747673)
chr5 (136-185)||(25329455-25329505)
chr5 (122-184)||(40916823-40916889)
chr5 (147-184)||(41307408-41307445)
chr5 (145-184)||(25329509-25329548)
chr5 (122-184)||(30065562-30065625)
chr5 (122-182)||(39191333-39191394)
chr5 (14-51)||(42061612-42061649)
chr5 (128-179)||(4100380-4100431)
chr5 (122-185)||(32837082-32837146)
chr5 (122-185)||(37214765-37214829)
chr5 (122-184)||(22937992-22938055)
chr5 (147-185)||(34830976-34831014)
chr5 (147-185)||(41877646-41877684)
chr5 (122-162)||(2836702-2836743)
chr5 (147-184)||(12087152-12087189)
chr5 (122-184)||(14376771-14376834)
chr5 (147-184)||(26753583-26753620)
chr5 (122-184)||(28442118-28442181)
chr5 (128-184)||(43490793-43490850)
chr5 (129-184)||(18031710-18031766)
[»] chr3 (36 HSPs)
chr3 (118-184)||(54460367-54460434)
chr3 (122-183)||(9380012-9380074)
chr3 (122-185)||(53814970-53815034)
chr3 (122-184)||(16243166-16243229)
chr3 (122-184)||(34984695-34984758)
chr3 (122-184)||(29344709-29344773)
chr3 (122-185)||(10880775-10880839)
chr3 (122-184)||(41976321-41976384)
chr3 (122-185)||(20729413-20729478)
chr3 (122-184)||(3839790-3839856)
chr3 (122-184)||(10884018-10884081)
chr3 (122-184)||(23299490-23299553)
chr3 (128-185)||(538014-538072)
chr3 (122-181)||(43808881-43808941)
chr3 (122-185)||(6921889-6921953)
chr3 (128-184)||(16185599-16185656)
chr3 (147-184)||(43926124-43926161)
chr3 (148-184)||(31857055-31857091)
chr3 (122-184)||(19302301-19302364)
chr3 (122-176)||(54736787-54736842)
chr3 (147-185)||(24124785-24124823)
chr3 (147-185)||(50462418-50462456)
chr3 (147-184)||(2280742-2280779)
chr3 (147-184)||(2778015-2778052)
chr3 (147-184)||(2872853-2872890)
chr3 (147-184)||(6445634-6445671)
chr3 (147-184)||(7485860-7485897)
chr3 (147-184)||(8462521-8462558)
chr3 (147-184)||(9157508-9157545)
chr3 (14-51)||(18645578-18645615)
chr3 (147-184)||(24128063-24128100)
chr3 (147-184)||(28264992-28265029)
chr3 (122-162)||(35411699-35411740)
chr3 (147-184)||(42355299-42355336)
chr3 (147-184)||(45895658-45895695)
chr3 (147-184)||(49743788-49743825)
[»] scaffold0757 (1 HSPs)
scaffold0757 (122-185)||(4562-4626)
[»] chr2 (29 HSPs)
chr2 (122-185)||(5665829-5665893)
chr2 (122-184)||(16788389-16788451)
chr2 (122-185)||(43722903-43722967)
chr2 (122-184)||(10599951-10600014)
chr2 (122-184)||(38014636-38014699)
chr2 (128-184)||(13972756-13972813)
chr2 (128-182)||(13136764-13136819)
chr2 (122-184)||(31430575-31430638)
chr2 (147-185)||(31586786-31586824)
chr2 (128-184)||(3874482-3874539)
chr2 (147-184)||(9189535-9189572)
chr2 (122-184)||(25873203-25873266)
chr2 (147-184)||(37280559-37280596)
chr2 (147-184)||(43208772-43208809)
chr2 (128-185)||(25869834-25869892)
chr2 (122-184)||(6825974-6826037)
chr2 (225-319)||(15828196-15828290)
chr2 (147-185)||(40780657-40780695)
chr2 (147-184)||(8887842-8887879)
chr2 (147-184)||(9186306-9186343)
chr2 (147-184)||(25957326-25957363)
chr2 (122-184)||(5104953-5105014)
chr2 (147-185)||(25960552-25960590)
chr2 (122-185)||(36809372-36809436)
chr2 (147-185)||(42369583-42369621)
chr2 (147-184)||(24237554-24237591)
chr2 (128-184)||(25139983-25140040)
chr2 (147-184)||(25955819-25955856)
chr2 (147-184)||(30148608-30148645)
[»] scaffold0381 (1 HSPs)
scaffold0381 (128-184)||(6496-6554)
[»] scaffold0520 (1 HSPs)
scaffold0520 (128-184)||(4823-4880)
[»] scaffold0270 (3 HSPs)
scaffold0270 (122-185)||(4357-4421)
scaffold0270 (122-185)||(11487-11551)
scaffold0270 (122-184)||(997-1060)
[»] chr8 (19 HSPs)
chr8 (122-185)||(18826771-18826835)
chr8 (122-185)||(12582217-12582281)
chr8 (122-184)||(19792926-19792990)
chr8 (147-185)||(16952997-16953035)
chr8 (122-160)||(25228039-25228077)
chr8 (231-320)||(8120553-8120642)
chr8 (147-184)||(10663011-10663048)
chr8 (147-184)||(31984107-31984144)
chr8 (14-61)||(5540832-5540879)
chr8 (122-184)||(5540932-5540995)
chr8 (122-184)||(5981157-5981220)
chr8 (122-184)||(45156855-45156918)
chr8 (147-189)||(13096045-13096087)
chr8 (147-184)||(17895490-17895527)
chr8 (147-184)||(20261647-20261684)
chr8 (147-184)||(21048277-21048314)
chr8 (14-51)||(25595521-25595558)
chr8 (122-186)||(30640503-30640570)
chr8 (122-185)||(14420863-14420927)
[»] scaffold0015 (2 HSPs)
scaffold0015 (122-185)||(197241-197305)
scaffold0015 (14-52)||(197356-197394)
[»] scaffold1026 (1 HSPs)
scaffold1026 (147-184)||(2564-2601)
[»] scaffold0567 (1 HSPs)
scaffold0567 (147-184)||(7018-7055)
[»] scaffold0014 (1 HSPs)
scaffold0014 (147-184)||(226465-226502)
[»] scaffold0005 (1 HSPs)
scaffold0005 (122-184)||(246287-246350)
[»] scaffold0045 (1 HSPs)
scaffold0045 (155-189)||(88960-88994)
[»] scaffold0427 (1 HSPs)
scaffold0427 (147-184)||(4675-4712)
[»] scaffold0250 (1 HSPs)
scaffold0250 (147-184)||(18599-18636)
[»] scaffold0080 (2 HSPs)
scaffold0080 (14-51)||(26371-26408)
scaffold0080 (122-161)||(26277-26317)
[»] scaffold0038 (1 HSPs)
scaffold0038 (147-184)||(30298-30335)
[»] scaffold1993 (1 HSPs)
scaffold1993 (129-184)||(1045-1101)


Alignment Details
Target: chr7 (Bit Score: 119; Significance: 9e-61; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 185 - 323
Target Start/End: Original strand, 6239745 - 6239883
Alignment:
Q  185 agtgcacaatacacctagtggccattaggttcccaggaagctatgcgaagctataactctttacatttctccttgggaagttgtacgaagctatagcttc 284  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  6239745 agtgcacaatacacctagtggccaccaggttcacaggaagctatgcgaagctataactctttacatttctccgtgggaagttctacgaagctatagcttc 6239844  T
Q  285 catatcagagttgtagttttctaaatcatgcaaaccact 323  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6239845 catatcagagttgtagttttctaaatcatgcaaaccact 6239883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 9865579 - 9865642
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9865579 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgactgactgtcatca 9865642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 45288075 - 45288138
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  45288075 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 45288138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 45291411 - 45291474
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  45291411 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 45291474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 20081577 - 20081641
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaag-actctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||| |||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  20081577 ttgcttgtgaactcaaaaatatcataaaaacactctaaaaatagtgaatgactgactgtcatcaa 20081641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 17730036 - 17729973
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaag-actctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||    
T  17730036 ttgcttgtgaactcaaaaatatcataaaaggactctaaaaatagtgaaagactgactgtcatca 17729973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 10344679 - 10344610
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataa-aagactctaaaaatagcgaatgactgactgtcatcaagtgca 190  Q
    ||||| |||||||||||||| |||||| ||||||||||||||||||||| |||||| |||||||| ||||    
T  10344679 ttgcttgtgaactcaaaaatttcataagaagactctaaaaatagcgaattactgacagtcatcaattgca 10344610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 4694786 - 4694723
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcata-aaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||||||||||| |||||||||||||||| | ||||||||||| ||||||    
T  4694786 ttgcttgtgaactcaaaaatatcatagaaagactctaaaaataacaaatgactgactttcatca 4694723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 8276075 - 8276012
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| ||||||||||||||||||||||| |||||||||||||  ||||||| |||||||||||    
T  8276075 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatatggaatgacagactgtcatca 8276012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 4596867 - 4596924
Alignment:
Q  128 gtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||| |||||||||||||||||| ||||||||||||| ||||||| ||||||||||||    
T  4596867 gtgagctcaaaaatatcataaaaagactctaaaaataacgaatgattgactgtcatca 4596924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 37167033 - 37167070
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37167033 aaaagactctaaaaatagcgaatgactgactgtcatca 37167070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 9080439 - 9080375
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||| ||||||||||||||  ||||||| ||||||||||||| ||||||||| |||||||||||    
T  9080439 ttgcttgtgaactcaaaaattacataaaaagactctaaaaataacgaatgactaactgtcatcaa 9080375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 11951279 - 11951317
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  11951279 aaaagactctaaaaataacgaatgacggactgtcatcaa 11951317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 4542137 - 4542074
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa--gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||| |||||| |||  ||| |||||||||| |||||||||||||||||||    
T  4542137 ttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 4542074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 4861029 - 4860992
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  4861029 aaaagactctagaaatagcgaatgacggactgtcatca 4860992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 10431449 - 10431386
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa--gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||| |||||| |||  ||| |||||||||| |||||||||||||||||||    
T  10431449 ttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 10431386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 11826393 - 11826430
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||| | |||||||||||||||||    
T  11826393 aaaagactctaaaaatagtgcatgactgactgtcatca 11826430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 26556573 - 26556510
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa--gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||| |||||| |||  ||| |||||||||| |||||||||||||||||||    
T  26556573 ttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 26556510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 320
Target Start/End: Original strand, 41615651 - 41615707
Alignment:
Q  266 tgtacgaagctatagcttccata--tcagagttgtagttttctaaatcatgcaaacc 320  Q
    |||||||||||||| ||||||||  |||||||||||  |||||||||| ||||||||    
T  41615651 tgtacgaagctataacttccataattcagagttgtaactttctaaatcttgcaaacc 41615707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 13450733 - 13450765
Alignment:
Q  152 actctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||| |||||||||||||||||||    
T  13450733 actctaaaaatagtgaatgactgactgtcatca 13450765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 217 - 318
Target Start/End: Complemental strand, 40088083 - 40087982
Alignment:
Q  217 ccaggaagctatgcgaagctataactctttacatttctccttgggaagttgtacgaagctatagcttccatatcagagttgtagttttctaaatcatgca 316  Q
    ||||||||||||||||||||||| |||||||||| | |||| ||||||||||||||||||||||||| ||| | |||||||||| |||||||||| ||||    
T  40088083 ccaggaagctatgcgaagctatagctctttacatctttcctcgggaagttgtacgaagctatagctttcatcttagagttgtagctttctaaatcttgca 40087984  T
Q  317 aa 318  Q
    ||    
T  40087983 aa 40087982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 12782169 - 12782105
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12782169 ttgcttgtaaactcaaaaatatcataaaatgactctaaaaatagcgaatgactgactgtcatcaa 12782105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 27013287 - 27013229
Alignment:
Q  128 gtgaactcaaaaatatcataaaa--gactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  27013287 gtgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 27013229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 320
Target Start/End: Complemental strand, 27258598 - 27258462
Alignment:
Q  184 aagtgcacaatacacctagtggccattaggttcccaggaagctatgcgaagctataactctttacatttctccttgggaagttgtacgaagctatagctt 283  Q
    |||||||||| || || |||| |||  ||||| ||||||| ||||| ||| ||||| || | ||||||  ||||    ||||||||||||||||||||||    
T  27258598 aagtgcacaacactcccagtgaccaccaggttgccaggaaactatgtgaaactatagctttctacattattcctccaaaagttgtacgaagctatagctt 27258499  T
Q  284 ccatatcagagttgtagttttctaaatcatgcaaacc 320  Q
    |||| ||||| |||||||||| |||||| ||||||||    
T  27258498 ccatctcagaattgtagttttttaaatcttgcaaacc 27258462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 44809841 - 44809905
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||| |||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||    
T  44809841 ttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatcaa 44809905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 52007375 - 52007431
Alignment:
Q  129 tgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  52007375 tgaactcaacaatatcataaaaagactctaaaaatagcgaatgactgactgtcatca 52007431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 29324042 - 29323979
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||    
T  29324042 ttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatca 29323979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 40794255 - 40794200
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgac 176  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40794255 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgactgac 40794200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 15430702 - 15430766
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa--gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||||||||||||||  |||||| |||||| ||||||||||||||||||||    
T  15430702 ttgcttgtgaactcaaaaatatcataaaaaagactctgaaaataacgaatgactgactgtcatca 15430766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 15437316 - 15437380
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa--gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||||||||||||||  |||||| |||||| ||||||||||||||||||||    
T  15437316 ttgcttgtgaactcaaaaatatcataaaaaagactctgaaaataacgaatgactgactgtcatca 15437380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 24045000 - 24045057
Alignment:
Q  128 gtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||    
T  24045000 gtgaactcaaaaatatcaaaaaaagactctaaaaataacgaatgactgactgtcatca 24045057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 44164065 - 44164001
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa--gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||||||||||||||  |||| ||||||||| |||||||||||||||||||    
T  44164065 ttgcttgtgaactcaaaaatatcataaaaaagactttaaaaatagtgaatgactgactgtcatca 44164001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 19820014 - 19819950
Alignment:
Q  122 ttgctcgtgaactcaaaaa-tatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| ||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||    
T  19820014 ttgcttgtgaactcaaaaaatatcataaaaagactttaaaaatagcgaatgactgactgtcatca 19819950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 3718399 - 3718336
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaag-actctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||||||||||||||  ||||||||||||| |||||| ||||||||||||    
T  3718399 ttgcttgtgaactcaaaaatatcataaaaatactctaaaaatagtgaatgagtgactgtcatca 3718336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 21419042 - 21418987
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgac 176  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  21419042 ttgcttgtgaactcaaaaatatcataaaaagacactaaaaatagcgaatgactgac 21418987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 27677908 - 27677966
Alignment:
Q  128 gtgaactcaaaaatatcataaaa--gactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||||||||  |||||||||||||| |||| ||||||||||||||    
T  27677908 gtgaactcaaaaatatcataaaaaagactctaaaaatagtgaataactgactgtcatca 27677966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 15431227 - 15431163
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat--aaaagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||| |||||||||||| ||||||  |||||||||||||||||| ||||||||||||||||||||    
T  15431227 ttgcttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatcaa 15431163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 15437841 - 15437777
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat--aaaagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||| |||||||||||| ||||||  |||||||||||||||||| ||||||||||||||||||||    
T  15437841 ttgcttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatcaa 15437777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 19826759 - 19826701
Alignment:
Q  128 gtgaactcaaaaa-tatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||    
T  19826759 gtgaactcaaaaaatttcataaaaagactctaaaaatagcgaatgactgactgtcatca 19826701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 34320781 - 34320839
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgt 179  Q
    ||||| |||||||||||| |||||||||| ||||||||||||||| |||||||||||||    
T  34320781 ttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgt 34320839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 38284378 - 38284416
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38284378 aaaagactctaaaaatagcgaatgactgactgtcatcaa 38284416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 53010401 - 53010458
Alignment:
Q  128 gtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||||||||||||| |||||||||||||  |||||||||||| ||||||    
T  53010401 gtgaactcaaaaatatcataaaaagactctaaaaataatgaatgactgactatcatca 53010458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 21201380 - 21201322
Alignment:
Q  262 aagttgtacgaagctatagcttccatatcagagttgtagttttctaaatcatgcaaacc 320  Q
    |||||||||||||||||||||||||| ||||| | |||| ||| |||||| ||||||||    
T  21201380 aagttgtacgaagctatagcttccatctcagaatcgtagctttataaatcttgcaaacc 21201322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 316
Target Start/End: Original strand, 35945533 - 35945631
Alignment:
Q  218 caggaagctatgcgaagctataactctttacatttctccttgggaagttgtacgaagctatagcttccatatcagagttgtagttttctaaatcatgca 316  Q
    |||||| |||||| ||| |||| |||||||||| | ||||   ||| || |||||  ||||||||||||||||||| |||||| |||||||||| ||||    
T  35945533 caggaaactatgcaaagttatagctctttacatctttcctcatgaaattttacgactctatagcttccatatcagatttgtagctttctaaatcttgca 35945631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 34018662 - 34018699
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||||||||||| |||||||||||    
T  34018662 aaaagactctaaaaatagcgaatgacggactgtcatca 34018699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 48416411 - 48416448
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||||||||||| |||||||||||    
T  48416411 aaaagactctaaaaatagcgaatgacggactgtcatca 48416448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 308
Target Start/End: Complemental strand, 2915998 - 2915894
Alignment:
Q  204 ggccattaggttcccaggaagctatgcgaagctataactctttacatttctccttgggaagttgtacgaagctatagcttccatatcagagttgtagttt 303  Q
    |||||| ||||| | |||||| |||| |||||||||||| | ||||||| |  |  | ||||||||||||| | |||||| ||| |||||||||||| ||    
T  2915998 ggccatcaggttgctaggaagttatgtgaagctataactatctacattttttatcagaaagttgtacgaagttgtagctttcatctcagagttgtagctt 2915899  T
Q  304 tctaa 308  Q
    |||||    
T  2915898 tctaa 2915894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 35509262 - 35509201
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcata-aaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||||||||||| |||||||  ||||||| ||||||||||||||| ||||    
T  35509262 ttgcttgtgaactcaaaaatatcatataaagact--aaaaataacgaatgactgactgttatca 35509201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 14571089 - 14571026
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat-aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| ||||||||||||||||||| ||||||||||||||||   ||||||| ||| |||||||    
T  14571089 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagaccgtcatca 14571026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 27691961 - 27692026
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa--gactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||| ||||| ||||||||||| |||||  |||||||||||||| |||||||| | |||||||||    
T  27691961 ttgcttgtgaattcaaaaatatcgtaaaaaagactctaaaaatagtgaatgactaattgtcatcaa 27692026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 44343988 - 44343902
Alignment:
Q  231 gaagctataactctttacatttctccttgggaagttgtacgaagctatagcttccatatcagagttgtagttttctaaatcatgcaa 317  Q
    |||| ||||||||||| ||| | |  ||||||||||||| |||| |||| ||||||| ||| |||||||  |||||||||| |||||    
T  44343988 gaagttataactctttgcatctttttttgggaagttgtatgaagttataacttccatttcaaagttgtacctttctaaatcttgcaa 44343902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 3798733 - 3798796
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa--gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||| |||||| |||  ||| |||||||||| |||||||||||||||||||    
T  3798733 ttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 3798796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 5669691 - 5669628
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa--gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||| |||||| |||  ||| |||||||||| |||||||||||||||||||    
T  5669691 ttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 5669628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 5721808 - 5721845
Alignment:
Q  14 tcatcatgtgcttcaaatcgagacacgttttcaacaat 51  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  5721808 tcatcctgtgcttcaaatcgtgacacgttttcaacaat 5721845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 18910667 - 18910604
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa--gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||| |||||| |||  ||| |||||||||| |||||||||||||||||||    
T  18910667 ttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 18910604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 33410899 - 33410962
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa--gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||| |||||| |||  ||| |||||||||| |||||||||||||||||||    
T  33410899 ttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 33410962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 40617787 - 40617824
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  40617787 aaaagactctcaaaatagcgaatgacggactgtcatca 40617824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 48636746 - 48636709
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  48636746 aaaagactctaaaaataacgaatgacagactgtcatca 48636709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 52531796 - 52531833
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||||||||||| | |||||||||    
T  52531796 aaaagactctaaaaatagcgaatgacgggctgtcatca 52531833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 5680525 - 5680469
Alignment:
Q  129 tgaactcaaaaatatcat-aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||| ||||||||||||||||   ||||||| | |||||||||    
T  5680525 tgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagtctgtcatca 5680469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 19865580 - 19865646
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa--gactctaaaaatagcgaatgactgactgtcatcaagt 187  Q
    ||||| |||||||||||| |||||| |||  ||| ||||||| || ||||||||||||||||||||||    
T  19865580 ttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcaagt 19865646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 217 - 311
Target Start/End: Complemental strand, 25437103 - 25437009
Alignment:
Q  217 ccaggaagctatgcgaagctataactctttacatttctccttgggaagttgtacgaagctatagcttccatatcagagttgtagttttctaaatc 311  Q
    |||||||||||||||||| |||||| |||||||| | |||| ||||||||||| ||||||||||||||||| | |||||||||  ||||||||||    
T  25437103 ccaggaagctatgcgaagttataacactttacatctttcctcgggaagttgtatgaagctatagcttccatcttagagttgtaactttctaaatc 25437009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 10289249 - 10289186
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  10289249 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgacttactgtcatca 10289186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 28666113 - 28666176
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  28666113 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaataacgaatgactgactgtcatca 28666176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 311
Target Start/End: Complemental strand, 25462088 - 25462001
Alignment:
Q  224 gctatgcgaagctataactctttacatttctccttgggaagttgtacgaagctatagcttccatatcagagttgtagttttctaaatc 311  Q
    |||||| ||||||||| |||||||||| | |||| || |||||||| |||||||||||||| || ||| |||||||  ||||||||||    
T  25462088 gctatgtgaagctatagctctttacatatttcctcggaaagttgtatgaagctatagcttctatctcatagttgtaaatttctaaatc 25462001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 12981150 - 12981188
Alignment:
Q  146 taaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  12981150 taaaagactctaaaaatagtgaatgactgactgtcatca 12981188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 2378472 - 2378435
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||||||||||| |||||||||||    
T  2378472 aaaagactctaaaaatagcgaatgacggactgtcatca 2378435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 15543252 - 15543215
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||||||||||| |||||||||||    
T  15543252 aaaagactctaaaaatagcgaatgacggactgtcatca 15543215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 20181336 - 20181288
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaat 169  Q
    ||||| |||||||||||||||||| |||| |||||||||||||||||||    
T  20181336 ttgcttgtgaactcaaaaatatcacaaaaggactctaaaaatagcgaat 20181288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 22154655 - 22154703
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaat 169  Q
    ||||| |||||||||||||||||| |||| |||||||||||||||||||    
T  22154655 ttgcttgtgaactcaaaaatatcacaaaaggactctaaaaatagcgaat 22154703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 9953099 - 9953036
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat-aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| ||||||||||||||||||| ||||||||||||||||    |||||| |||||||||||    
T  9953099 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtgaaatgacagactgtcatca 9953036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 22463552 - 22463514
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  22463552 aaaagactctaaaaatagtgtatgactgactgtcatcaa 22463514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 5739153 - 5739190
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  5739153 aaaaaactctaaaaatagtgaatgactgactgtcatca 5739190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 9314767 - 9314804
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||| | |||||||||||||||||    
T  9314767 aaaagactctaaaaatagtgtatgactgactgtcatca 9314804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 11188798 - 11188835
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||||||||||  |||||||||||    
T  11188798 aaaagactctaaaaatagcgaatgatggactgtcatca 11188835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 21633588 - 21633551
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||| | |||||||||||||||||    
T  21633588 aaaagactctaaaaatagtgtatgactgactgtcatca 21633551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 23379650 - 23379687
Alignment:
Q  14 tcatcatgtgcttcaaatcgagacacgttttcaacaat 51  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  23379650 tcatcatgtgctccaaatcgtgacacgttttcaacaat 23379687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 23388989 - 23389026
Alignment:
Q  14 tcatcatgtgcttcaaatcgagacacgttttcaacaat 51  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  23388989 tcatcatgtgctccaaatcgtgacacgttttcaacaat 23389026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 28116977 - 28116940
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||| | |||||||||||||||||    
T  28116977 aaaagactctaaaaatagtgtatgactgactgtcatca 28116940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 28229837 - 28229800
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  28229837 aaaagactctcaaaatagcgaatgacggactgtcatca 28229800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 30654685 - 30654648
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  30654685 aaaagactctagaaatagcgaatgacggactgtcatca 30654648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 21019313 - 21019367
Alignment:
Q  130 gaactcaaaaatatcataaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21019313 gaactcaaaaatatcataaaagactctaaaaatagcgaatgactgactgtcatca 21019367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 2404785 - 2404722
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  2404785 ttgcttgtgaactcaaaaatattataaaaagactctaaaaatagcgaatgactgactgtcatca 2404722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 41059178 - 41059234
Alignment:
Q  130 gaactcaaaaatatcataaaa--gactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  41059178 gaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 41059234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 45961644 - 45961707
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataa-aagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||    
T  45961644 ttgcttgtgaactcaaaattatcataacaagactctaaaaatagcaaatgactgactgtcatca 45961707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 21108342 - 21108394
Alignment:
Q  134 tcaaaaatatcataa-aagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  21108342 tcaaaaatatcataagaagactctaaaaagagcgaatgactgactgtcatcaa 21108394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 188
Target Start/End: Complemental strand, 42021784 - 42021717
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatcaagtg 188  Q
    ||||| |||||||||  ||||| |||||| ||||||||||||||||||||| ||||||||||||||||    
T  42021784 ttgcttgtgaactcagtaatattataaaaagactctaaaaatagcgaatgattgactgtcatcaagtg 42021717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 27537150 - 27537212
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatc 183  Q
    ||||| |||||||||||| |||||||||| |||| |||||||||| |||||||||||||||||    
T  27537150 ttgcttgtgaactcaaaattatcataaaaagactataaaaatagcaaatgactgactgtcatc 27537212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 45940658 - 45940621
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45940658 aaaagactctaaaaatagcgaatgactgactgtcatca 45940621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 185
Target Start/End: Original strand, 22460405 - 22460444
Alignment:
Q  146 taaaagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  22460405 taaaagactctaaaaatagtgaatgactgactgtcatcaa 22460444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 320
Target Start/End: Complemental strand, 39312171 - 39312052
Alignment:
Q  201 agtggccattaggttcccaggaagctatgcgaagctataactctttacatttctccttgggaagttgtacgaagctatagcttccatatcagagttgtag 300  Q
    ||||||||  ||||| | |||||||||||||||||||||  |   ||||| | ||||  | ||||||||||||| |||| |||| ||  |||||||||||    
T  39312171 agtggccaccaggttgctaggaagctatgcgaagctatagtttgctacatctttcctcagaaagttgtacgaagttatatcttcaatcacagagttgtag 39312072  T
Q  301 ttttctaaatcatgcaaacc 320  Q
     |||||||||| ||||||||    
T  39312071 ctttctaaatcttgcaaacc 39312052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 28110320 - 28110282
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  28110320 aaaagactctaaaaatagcgaatgacggactgtcatcaa 28110282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 2793362 - 2793299
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat--aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||| ||||||  |||||||||||||||||| ||| |||||||||||||||    
T  2793362 ttgcttgtgaactcaaaa-tatcattaaaaagactctaaaaatagtgaacgactgactgtcatca 2793299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 37184746 - 37184783
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||||||||||| |||||||||||    
T  37184746 aaaagactctaaaaatagcgaatgacggactgtcatca 37184783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 47708780 - 47708817
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||| |||||||||||||||||||    
T  47708780 aaaagactctaaaaatagtgaatgactgactgtcatca 47708817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 29644245 - 29644308
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat-aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| ||||||||||||||||||| ||||||||||| ||||   ||||||| |||||||||||    
T  29644245 ttgcttgtgaactcaaaaatatcataaaaagactctataaatgtggaatgacagactgtcatca 29644308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 49147151 - 49147112
Alignment:
Q  146 taaaagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||||||||||||||||| |||||| |||||||||||||    
T  49147151 taaaagactctaaaaatagtgaatgattgactgtcatcaa 49147112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 22454281 - 22454319
Alignment:
Q  146 taaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  22454281 taaaagattctaaaaatagtgaatgactgactgtcatca 22454319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 2793462 - 2793425
Alignment:
Q  14 tcatcatgtgcttcaaatcgagacacgttttcaacaat 51  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  2793462 tcatcctgtgcttcaaatcgtgacacgttttcaacaat 2793425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 3088698 - 3088735
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||| | |||||||||||||||||    
T  3088698 aaaagactctaaaaatagtgcatgactgactgtcatca 3088735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 20398104 - 20398067
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  20398104 aaaagactctagaaatagcgaatgacggactgtcatca 20398067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 23022806 - 23022843
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  23022806 aaaagactctaaaaataacgaatgacggactgtcatca 23022843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 222 - 320
Target Start/End: Complemental strand, 624500 - 624401
Alignment:
Q  222 aagctatgcgaagctataactctttacatttctccttgggaagttgtacgaagctatagcttccatatcagagttgtag-ttttctaaatcatgcaaacc 320  Q
    ||||||||| ||||||||||||| ||||||| ||||   ||||||||||||||||||| ||||||| | |||||||||| ||||||||||| ||||||||    
T  624500 aagctatgcaaagctataactctctacatttttcctcatgaagttgtacgaagctataacttccatcttagagttgtagcttttctaaatcctgcaaacc 624401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 7270304 - 7270241
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  7270304 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgacagactgtcatca 7270241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 21827985 - 21828041
Alignment:
Q  130 gaactcaaaaatatcataaaa--gactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  21827985 gaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 21828041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 14016973 - 14017036
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||    
T  14016973 ttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatca 14017036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 28788338 - 28788401
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| ||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  28788338 ttgcttgtgaactaaaaaatatcataaaaagactctaaaaatagcaaatgactgactgtcatca 28788401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 21336678 - 21336742
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa--gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||||||| ||||||  |||||||||||||| |||||||||||||||||||    
T  21336678 ttgcttgtgaactcaaaaatataataaaaaagactctaaaaatagtgaatgactgactgtcatca 21336742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 17747673 - 17747617
Alignment:
Q  129 tgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||    
T  17747673 tgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatca 17747617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 25329505 - 25329455
Alignment:
Q  136 aaaaatatcataaaaga-ctctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  25329505 aaaaatatcataaaaaaactctaaaaatagcgaatgactgactgtcatcaa 25329455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 40916823 - 40916889
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa----gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||||||| ||||||    ||||||||||||||| ||||||||||||||||||    
T  40916823 ttgcttgtgaactcaaaaatatgataaaaaaaagactctaaaaatagcaaatgactgactgtcatca 40916889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 41307408 - 41307445
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41307408 aaaagactctaaaaatagcgaatgactgactgtcatca 41307445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 184
Target Start/End: Original strand, 25329509 - 25329548
Alignment:
Q  145 ataaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  25329509 ataaaaaactctaaaaatagcgaatgactgactgtcatca 25329548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 30065625 - 30065562
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||| ||||||| ||| ||||||||    
T  30065625 ttgcttgtgaattcaaaaatatcataaaaagactctaaaaataacgaatgaatgattgtcatca 30065562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 39191394 - 39191333
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcat 182  Q
    ||||| |||||||||||| |||||||||| ||||||||||||| | ||||| ||||||||||    
T  39191394 ttgcttgtgaactcaaaagtatcataaaaagactctaaaaataacaaatgattgactgtcat 39191333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 42061649 - 42061612
Alignment:
Q  14 tcatcatgtgcttcaaatcgagacacgttttcaacaat 51  Q
    |||||||||||||||||||| |||||||||||||||||    
T  42061649 tcatcatgtgcttcaaatcgtgacacgttttcaacaat 42061612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 4100380 - 4100431
Alignment:
Q  128 gtgaactcaaaaatatcat-aaaagactctaaaaatagcgaatgactgactgt 179  Q
    ||||||||||||||||||| |||||||||| |||||||||||| |||||||||    
T  4100380 gtgaactcaaaaatatcataaaaagactct-aaaatagcgaataactgactgt 4100431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 32837146 - 32837082
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat-aaaagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||| ||||||||||||||||||| ||||||||||||||||   |||||||  |||||||||||    
T  32837146 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacatactgtcatcaa 32837082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 37214829 - 37214765
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat-aaaagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||| ||||||||||||||||||| ||||||||||||||||   ||||||| |||||| |||||    
T  37214829 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgttatcaa 37214765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 22937992 - 22938055
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat-aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| ||||||||||||||||||| |||||||||||||||    ||||||| |||||||||||    
T  22937992 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaacgtggaatgacagactgtcatca 22938055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 34831014 - 34830976
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  34831014 aaaagactctagaaatagcgaatgacggactgtcatcaa 34830976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 41877646 - 41877684
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  41877646 aaaagactctagaaatagcgaatgacggactgtcatcaa 41877684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 2836743 - 2836702
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat-aaaagactctaaaaat 162  Q
    ||||| ||||||||||||||||||| ||||||||||||||||    
T  2836743 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 2836702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 12087189 - 12087152
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  12087189 aaaagactctagaaatagcgaatgacggactgtcatca 12087152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 14376771 - 14376834
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa--gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||| |||||| |||  ||| |||||||||| |||||||||||||||||||    
T  14376771 ttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 14376834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 26753583 - 26753620
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  26753583 aaaagactctaaaaataacgaatgacggactgtcatca 26753620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 28442118 - 28442181
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa--gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||| |||||| |||  ||| |||||||||| |||||||||||||||||||    
T  28442118 ttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 28442181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 43490850 - 43490793
Alignment:
Q  128 gtgaactcaaaaatatcat-aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||||||||| ||||||||||||||||    |||||| |||||||||||    
T  43490850 gtgaactcaaaaatatcataaaaagactctaaaaatgtgaaatgacagactgtcatca 43490793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 18031766 - 18031710
Alignment:
Q  129 tgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||| |||||||||||||| |||||||||||||  ||||||| |||| ||||||    
T  18031766 tgaactcgaaaatatcataaaaagactctaaaaatatggaatgacggactatcatca 18031710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 54460434 - 54460367
Alignment:
Q  118 aagattgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  54460434 aagattgcttgtgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatca 54460367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 9380074 - 9380012
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatc 183  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9380074 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgactgactgtcatc 9380012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 53815034 - 53814970
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  53815034 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatcaa 53814970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 16243229 - 16243166
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  16243229 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgactgattgtcatca 16243166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 34984695 - 34984758
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  34984695 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaataacgaatgactgactgtcatca 34984758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 29344709 - 29344773
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataa--aagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||    
T  29344709 ttgcttgtgaactcaaaaatatcataagaaagactctaaaaatagtgaatgactgactgtcatca 29344773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 10880839 - 10880775
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||    
T  10880839 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcaaataactgactgtcatcaa 10880775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 41976384 - 41976321
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaag-actctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||    
T  41976384 ttgcttgtgaactcaaaaatattataaaaacactctaaaaatagcgaatgactgactgtcatca 41976321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 20729413 - 20729478
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaaga--ctctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||| ||||||| ||||||||||||||| |  |||||||||||||||||||||||||||||||||    
T  20729413 ttgcttgtgaactaaaaaatatcataaaaaaaactctaaaaatagcgaatgactgactgtcatcaa 20729478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 3839856 - 3839790
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat----aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||||||||||    |||| ||||||||||||| |||||||||||||||||||    
T  3839856 ttgcttgtgaactcaaaaatatcattaaaaaaaaactctaaaaatagtgaatgactgactgtcatca 3839790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 10884081 - 10884018
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat--aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||| ||||||  |||||||||||||||||| |||||||||||||||||||    
T  10884081 ttgcttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 10884018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 23299490 - 23299553
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat--aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||| ||||||  |||||||||||||||||| |||||||||||||||||||    
T  23299490 ttgcttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 23299553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 538072 - 538014
Alignment:
Q  128 gtgaactcaaaaatatcat--aaaagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    |||||||||||| ||||||  |||||||||||||||||| ||||||||||||||||||||    
T  538072 gtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatcaa 538014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 181
Target Start/End: Complemental strand, 43808941 - 43808881
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat-aaaagactctaaaaatagcgaatgactgactgtca 181  Q
    ||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||| |||||||    
T  43808941 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaataacgaataactaactgtca 43808881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 6921953 - 6921889
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat--aaaagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||| |||||||||||| ||||||  ||||| |||||||||||| ||||||||||||||||||||    
T  6921953 ttgcttgtgaactcaaaa-tatcatgaaaaaggctctaaaaatagtgaatgactgactgtcatcaa 6921889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 16185599 - 16185656
Alignment:
Q  128 gtgaactcaaaaatatcat-aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||||||||| ||||||||||||||||   ||||||| |||||||||||    
T  16185599 gtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatca 16185656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 43926161 - 43926124
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||||||||||| |||||||||||    
T  43926161 aaaagactctaaaaatagcgaatgacggactgtcatca 43926124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 31857091 - 31857055
Alignment:
Q  148 aaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||||||| |||||||||||||||||||    
T  31857091 aaagactctaaaaatagtgaatgactgactgtcatca 31857055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 19302301 - 19302364
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat-aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| ||||||||||||||||||| |||||||||||||||||   |||||| |||| ||||||    
T  19302301 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatatgaaatgacggactatcatca 19302364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 54736787 - 54736842
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgac 176  Q
    ||||| |||||||||||| |||||||||| |||||||||||||| |||||| ||||    
T  54736787 ttgcttgtgaactcaaaagtatcataaaaagactctaaaaatagtgaatgattgac 54736842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 24124823 - 24124785
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  24124823 aaaagactctacaaatagcgaatgacggactgtcatcaa 24124785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 50462418 - 50462456
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  50462418 aaaagactctaaaaatagtgaatgacggactgtcatcaa 50462456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 2280742 - 2280779
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||| | |||||||||||||||||    
T  2280742 aaaagactctaaaaatagtgcatgactgactgtcatca 2280779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 2778052 - 2778015
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  2778052 aaaagactctagaaatagcgaatgacggactgtcatca 2778015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 2872890 - 2872853
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  2872890 aaaagactctcaaaatagcgaatgacggactgtcatca 2872853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 6445634 - 6445671
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  6445634 aaaagactctagaaatagcgaatgacggactgtcatca 6445671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 7485897 - 7485860
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  7485897 aaaagactctagaaatagcgaatgacggactgtcatca 7485860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 8462521 - 8462558
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  8462521 aaaagactctagaaatagcgaatgacggactgtcatca 8462558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 9157545 - 9157508
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||| | |||||||||||||||||    
T  9157545 aaaagactctaaaaatagtgcatgactgactgtcatca 9157508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 18645578 - 18645615
Alignment:
Q  14 tcatcatgtgcttcaaatcgagacacgttttcaacaat 51  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  18645578 tcatcctgtgcttcaaatcgtgacacgttttcaacaat 18645615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 24128100 - 24128063
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  24128100 aaaagactctagaaatagcgaatgacggactgtcatca 24128063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 28265029 - 28264992
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  28265029 aaaagactctagaaatagcgaatgacggactgtcatca 28264992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 35411740 - 35411699
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat-aaaagactctaaaaat 162  Q
    ||||| ||||||||||||||||||| ||||||||||||||||    
T  35411740 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaat 35411699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 42355299 - 42355336
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  42355299 aaaaaactctaaaaatagtgaatgactgactgtcatca 42355336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 45895695 - 45895658
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  45895695 aaaagactctagaaatagcgaatgacggactgtcatca 45895658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 49743788 - 49743825
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  49743788 aaaagactctaaaaataactaatgactgactgtcatca 49743825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 4626 - 4562
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  4626 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagtgaatgactgactgtcatcaa 4562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 5665893 - 5665829
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  5665893 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgattgactgtcatcaa 5665829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 16788451 - 16788389
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||    
T  16788451 ttgcttgtgaactcaaaattatcataaaagattctaaaaatagcaaatgactgactgtcatca 16788389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 43722967 - 43722903
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||| ||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||    
T  43722967 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaataacgaatgattgactgtcatcaa 43722903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 10600014 - 10599951
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||    
T  10600014 ttgcttgtgaactcaaaaatatcataaaaagattctaaaaatagtgaatgactgactgtcatca 10599951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 38014699 - 38014636
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||    
T  38014699 ttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatca 38014636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 13972756 - 13972813
Alignment:
Q  128 gtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||    
T  13972756 gtgaactcaaaaatatcataaaaagactctaaaaataacgaatgattgactgtcatca 13972813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 13136819 - 13136764
Alignment:
Q  128 gtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcat 182  Q
    ||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||    
T  13136819 gtgaactcaaaaatatcataaaatgactctaaaaataacaaatgactgactgtcat 13136764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 31430575 - 31430638
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||| |||||||||| ||||||||||||||| ||||||| ||||||||||    
T  31430575 ttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactaactgtcatca 31430638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 31586786 - 31586824
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31586786 aaaagactctaaaaatagcgaatgactgactgtcatcaa 31586824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 3874539 - 3874482
Alignment:
Q  128 gtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||||||| ||||| |||||||||||||  |||||||||||||||||||    
T  3874539 gtgaactcaaaaatatcctaaaaagactctaaaaataatgaatgactgactgtcatca 3874482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 9189535 - 9189572
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9189535 aaaagactctaaaaatagcgaatgactgactgtcatca 9189572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 25873266 - 25873203
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat--aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||| ||||||  |||||||||||||||||| |||||||||||||||||||    
T  25873266 ttgcttgtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 25873203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 37280559 - 37280596
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37280559 aaaagactctaaaaatagcgaatgactgactgtcatca 37280596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 43208772 - 43208809
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43208772 aaaagactctaaaaatagcgaatgactgactgtcatca 43208809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 25869892 - 25869834
Alignment:
Q  128 gtgaactcaaaaatatcat--aaaagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    |||||||||||| ||||||  |||||||||||||||||| ||||||||||||||||||||    
T  25869892 gtgaactcaaaa-tatcatgaaaaagactctaaaaatagtgaatgactgactgtcatcaa 25869834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 6826037 - 6825974
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat-aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| ||||||||||||||||||| |||||||| |||| ||| ||||||| ||||||||||||    
T  6826037 ttgcttgtgaactcaaaaatatcataaaaagactttaaatataacgaatgattgactgtcatca 6825974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 319
Target Start/End: Complemental strand, 15828290 - 15828196
Alignment:
Q  225 ctatgcgaagctataactctttacatttctccttgggaagttgtacgaagctatagcttccatatcagagttgtagttttctaaatcatgcaaac 319  Q
    ||||| ||||||| |||||| |||||||  | | ||||||||||||||| |||||| |||||| |||||||||| | |||  ||||| |||||||    
T  15828290 ctatgtgaagctacaactctctacattttacatcgggaagttgtacgaaactatagtttccatctcagagttgtggattttaaaatcttgcaaac 15828196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 40780695 - 40780657
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  40780695 aaaagactctaaaaatagcgaatgattgactgtcatcaa 40780657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 8887879 - 8887842
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||||||||||| |||||||||||    
T  8887879 aaaagactctaaaaatagcgaatgacggactgtcatca 8887842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 9186306 - 9186343
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  9186306 aaaagactctaaaaatagcgaatgactaactgtcatca 9186343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 25957326 - 25957363
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||||||||||| |||||||||||    
T  25957326 aaaagactctaaaaatagcgaatgacggactgtcatca 25957363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 5105014 - 5104953
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat-aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| ||||||||||||||||||| |||| |||||||||  || |||||||||||||||||||    
T  5105014 ttgcttgtgaactcaaaaatatcataaaaaaactctaaaa--agtgaatgactgactgtcatca 5104953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 25960552 - 25960590
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  25960552 aaaagactctaaaaatagcgaatgatggactgtcatcaa 25960590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 36809372 - 36809436
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa--gactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||| |||||||||||| |||||| |||  ||| |||||||||| ||||||||||||||||||||    
T  36809372 ttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaatagtgaatgactgactgtcatcaa 36809436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 185
Target Start/End: Original strand, 42369583 - 42369621
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  42369583 aaaagactctagaaatagcgaatgacggactgtcatcaa 42369621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 24237591 - 24237554
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  24237591 aaaagactctaagaatagcgaatgacggactgtcatca 24237554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 25139983 - 25140040
Alignment:
Q  128 gtgaactcaaaaatatcat-aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||||||||| |||| ||||||||| |   |||||||||||||||||||    
T  25139983 gtgaactcaaaaatatcataaaaaaactctaaaattgtggaatgactgactgtcatca 25140040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 25955856 - 25955819
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||||||||||  |||||||||||    
T  25955856 aaaagactctaaaaatagcgaatgaaggactgtcatca 25955819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 30148645 - 30148608
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  30148645 aaaagactctagaaatagcgaatgacggactgtcatca 30148608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 6496 - 6554
Alignment:
Q  128 gtgaactcaaaaatatcataaaa--gactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  6496 gtgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 6554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 4823 - 4880
Alignment:
Q  128 gtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  4823 gtgaactcaaaaatatcataaaaagactctaaaaataacgaatgactgactgtcatca 4880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 4357 - 4421
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  4357 ttgcttgtgaactcaaaaatatcataaaaagactctaaaagtagcgaatgactgactgacatcaa 4421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 11487 - 11551
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  11487 ttgcttgtgaactcaaaaatatcataaaaagactctaaaagtagcgaatgactgactgacatcaa 11551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 997 - 1060
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaag-actctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||    
T  997 ttgcttgtgaactcaaaaatatcataaaaatactctaaaagtagcgaatgactgactgtcatca 1060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 18826771 - 18826835
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||| |||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||    
T  18826771 ttgcttgtgaactcaaaattatcataaaaagactctaaaaatagcaaatgactgactgtcatcaa 18826835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 12582281 - 12582217
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||| | |||||||    
T  12582281 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatagcgaatgattgattttcatcaa 12582217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 19792990 - 19792926
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa--gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| |||||||||||||||||||||||  |||||||||||||| ||||| | |||||||||||    
T  19792990 ttgcttgtgaactcaaaaatatcataaaaaagactctaaaaatagtgaatggccgactgtcatca 19792926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 16953035 - 16952997
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  16953035 aaaagactctaaaaatagcgaatgacggactgtcatcaa 16952997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 25228077 - 25228039
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaagactctaaaa 160  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  25228077 ttgcttgtgaactcaaaaatatcataaaagactctaaaa 25228039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 8120553 - 8120642
Alignment:
Q  231 gaagctataactctttacatttctccttgggaagttgtacgaagctatagcttccatatcagagttgtagttttctaaatcatgcaaacc 320  Q
    ||||||||| | |||||||| | ||||  ||||||||||||||||||||  |||| | ||| | |||||| |||||||||| ||||||||    
T  8120553 gaagctatatcactttacatctttcctctggaagttgtacgaagctataaattccttctcaaaattgtagctttctaaatcttgcaaacc 8120642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 10663048 - 10663011
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||| |||||||||||||||||||    
T  10663048 aaaagactctaaaaatagtgaatgactgactgtcatca 10663011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 31984144 - 31984107
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  31984144 aaaagactctaaaaatagcgaatgattgactgtcatca 31984107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 5540832 - 5540879
Alignment:
Q  14 tcatcatgtgcttcaaatcgagacacgttttcaacaattgtggcatga 61  Q
    ||||| |||||||||||||| ||||||||||||||||| ||| |||||    
T  5540832 tcatcctgtgcttcaaatcgtgacacgttttcaacaatcgtgacatga 5540879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 5540932 - 5540995
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat-aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| ||||||||||||||||||| ||||||||||||||||   |||||||  ||||||||||    
T  5540932 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacaaactgtcatca 5540995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 5981157 - 5981220
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat-aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| ||||||||||||||||||| ||||||||||||||||    |||||| |||||||||||    
T  5981157 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtgaaatgacggactgtcatca 5981220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 45156855 - 45156918
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat-aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| ||||||||||||||||||| |||||||||||||||||  ||||||   ||||||||||    
T  45156855 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatatagaatgataaactgtcatca 45156918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 189
Target Start/End: Complemental strand, 13096087 - 13096045
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatcaagtgc 189  Q
    |||| ||||||||||||| |||| |||||||||||||||||||    
T  13096087 aaaaaactctaaaaatagtgaataactgactgtcatcaagtgc 13096045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 17895490 - 17895527
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  17895490 aaaagactctagaaatagcgaatgacggactgtcatca 17895527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 20261684 - 20261647
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||| | |||||||||||||||||    
T  20261684 aaaagactctaaaaatagtgtatgactgactgtcatca 20261647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 21048314 - 21048277
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||| | |||||||||||||||||    
T  21048314 aaaagactctaaaaatagtgtatgactgactgtcatca 21048277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 25595521 - 25595558
Alignment:
Q  14 tcatcatgtgcttcaaatcgagacacgttttcaacaat 51  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  25595521 tcatcatgtgctccaaatcgtgacacgttttcaacaat 25595558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 30640570 - 30640503
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcataaaa---gactctaaaaatagcgaatgactgactgtcatcaag 186  Q
    ||||| |||||||||||| ||||||||||   || ||| ||||||| |||||| ||||||||||||||    
T  30640570 ttgcttgtgaactcaaaagtatcataaaaaaagattcttaaaatagtgaatgattgactgtcatcaag 30640503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 14420927 - 14420863
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat-aaaagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||| ||||||| ||||||||||| ||||||||||||||||   ||||||  ||||||||||||    
T  14420927 ttgcttgtgaactaaaaaatatcataaaaagactctaaaaatgtggaatgagagactgtcatcaa 14420863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 197305 - 197241
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat-aaaagactctaaaaatagcgaatgactgactgtcatcaa 185  Q
    ||||| ||||||||||||||||||| ||||||||||||||||   ||||||| ||||||||||||    
T  197305 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagactgtcatcaa 197241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 197394 - 197356
Alignment:
Q  14 tcatcatgtgcttcaaatcgagacacgttttcaacaatt 52  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  197394 tcatcctgtgcttcaaatcgtgacacgttttcaacaatt 197356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 2564 - 2601
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  2564 aaaagactctaaaaatagcgaatgactgattgtcatca 2601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0567 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 7018 - 7055
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||| |||||||||||||||||||    
T  7018 aaaagactctaaaaatagtgaatgactgactgtcatca 7055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 226502 - 226465
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  226502 aaaagactctaaaaatagcgaatgattgactgtcatca 226465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 184
Target Start/End: Original strand, 246287 - 246350
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat-aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||| ||||||||||||||||||| ||||||||||||||||   ||||||| ||| |||||||    
T  246287 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaatgtggaatgacagaccgtcatca 246350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 88994 - 88960
Alignment:
Q  155 ctaaaaatagcgaatgactgactgtcatcaagtgc 189  Q
    ||||||||| |||||||||||||||||||||||||    
T  88994 ctaaaaataacgaatgactgactgtcatcaagtgc 88960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 4675 - 4712
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  4675 aaaagactctaaaaatagcgaatgacggactatcatca 4712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 18636 - 18599
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  18636 aaaagactctagaaatagcgaatgacggactgtcatca 18599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 26408 - 26371
Alignment:
Q  14 tcatcatgtgcttcaaatcgagacacgttttcaacaat 51  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  26408 tcatcctgtgcttcaaatcgtgacacgttttcaacaat 26371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 26317 - 26277
Alignment:
Q  122 ttgctcgtgaactcaaaaatatcat-aaaagactctaaaaa 161  Q
    ||||| ||||||||||||||||||| |||||||||||||||    
T  26317 ttgcttgtgaactcaaaaatatcataaaaagactctaaaaa 26277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 30335 - 30298
Alignment:
Q  147 aaaagactctaaaaatagcgaatgactgactgtcatca 184  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  30335 aaaagactctcaaaatagcgaatgacggactgtcatca 30298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1993 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1993
Description:

Target: scaffold1993; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 1101 - 1045
Alignment:
Q  129 tgaactcaaaaatatcataaaa-gactctaaaaatagcgaatgactgactgtcatca 184  Q
    ||||||| |||||||||||||| ||||||||||||    ||||||||||||||||||    
T  1101 tgaactccaaaatatcataaaaagactctaaaaatgtgaaatgactgactgtcatca 1045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University