View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14556_high_14 (Length: 302)
Name: NF14556_high_14
Description: NF14556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14556_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 83 - 277
Target Start/End: Complemental strand, 47586319 - 47586113
Alignment:
| Q |
83 |
atttaagttagtccgatgatgttgtcttgtgacattagagtatactcatcttaagtcttgtcagttaatgtgaaatctatcttcaaaagagaaaactaga |
182 |
Q |
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| T |
47586319 |
atttaagttagtccgatgatgttgtcttgtgacattggagtatattcatcttaagtcttgtcagttaatgtgaaatctatcttcaaaagagaaaattaga |
47586220 |
T |
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| Q |
183 |
atgacatttatctaggt------------tattatccacacgtcttgaacatgattaactccgttagataatcttaggaggaaaaaaataaataaaataa |
270 |
Q |
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| T |
47586219 |
atgacatttatctaggttcagatcgcatctattatccacacatcttgaacatgattaactccgttagagaatcttaggaggaaaaaaataaataaaataa |
47586120 |
T |
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| Q |
271 |
tcctcct |
277 |
Q |
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||||||| |
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| T |
47586119 |
tcctcct |
47586113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 47586430 - 47586363
Alignment:
| Q |
7 |
aatgtaatgataatcatagtcgaattcttttagtaaattttggagagtattgaatgggaggaattatg |
74 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47586430 |
aatgtaatgataatcatagtcgaattcttttagtaaattttggagagtattgaatgggaggaattatg |
47586363 |
T |
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