View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14556_high_20 (Length: 204)
Name: NF14556_high_20
Description: NF14556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14556_high_20 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-103; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 38391053 - 38391245
Alignment:
| Q |
12 |
taccagttagaaaaatctaaacgccacccagccgccttggcaaccaacaagtatggaattggaaagtgggaatcgttcaaaccatgtgtgtatcaagata |
111 |
Q |
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| T |
38391053 |
taccagttagaaaaatctaaacgccacccagctgccttggcaaccaacaagtatggaattggaaagtgggaatcgttcaaaccatgtgtgtatcaagata |
38391152 |
T |
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| Q |
112 |
atatatactcatgaagcacaattcattttactatatcttcaaactttgtcatgtaggtttgaataatgtagtttttcaatttaagtaactact |
204 |
Q |
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| T |
38391153 |
atatatactcatgaagcacaattcattttactatatcttcaaactttgtcatgtaggtttgaataatgtagtttttcaatttaagtaactact |
38391245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 101 - 204
Target Start/End: Complemental strand, 38389931 - 38389828
Alignment:
| Q |
101 |
gtatcaagataatatatactcatgaagcacaattcattttactatatcttcaaactttgtcatgtaggtttgaataatgtagtttttcaatttaagtaac |
200 |
Q |
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| T |
38389931 |
gtatcaagagaatacatactcatgaagcgcaattcattttactatatcttctaactttgtcatgtaggtctgaacaatgtggtttttcaatttaagtaac |
38389832 |
T |
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| Q |
201 |
tact |
204 |
Q |
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|||| |
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| T |
38389831 |
tact |
38389828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 27 - 170
Target Start/End: Complemental strand, 39591189 - 39591048
Alignment:
| Q |
27 |
tctaaacgccacccagccgccttggcaaccaacaagtatggaattggaaagtgggaatcgttcaaaccatgtgtgtatcaagataatatatactcatgaa |
126 |
Q |
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| T |
39591189 |
tctaaaagtcacccagcagctttgacaaccaacaagtatggaattggaaactgggaattattcaaagc--ttgcttatcaagagaatacttactcatgaa |
39591092 |
T |
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| Q |
127 |
gcacaattcattttactatatcttcaaactttgtcatgtaggtt |
170 |
Q |
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| T |
39591091 |
acgcaattcgtttttatatatcttcaaactttgccaggtaggtt |
39591048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 157
Target Start/End: Complemental strand, 39623937 - 39623809
Alignment:
| Q |
27 |
tctaaacgccacccagccgccttggcaaccaacaagtatggaattggaaagtgggaatcgttcaaaccatgtgtgtatcaagataatatatactcatgaa |
126 |
Q |
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| T |
39623937 |
tctaaaagccatccagctgctttgacaacaaacaagtatggaattggaaagttggaattattcaaagcttgcttg--tcaagagactatttactcatgaa |
39623840 |
T |
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| Q |
127 |
gcacaattcattttactatatcttcaaactt |
157 |
Q |
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| T |
39623839 |
gcgcaattcatctcactatatcttcaaactt |
39623809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 92
Target Start/End: Complemental strand, 39576979 - 39576914
Alignment:
| Q |
27 |
tctaaacgccacccagccgccttggcaaccaacaagtatggaattggaaagtgggaatcgttcaaa |
92 |
Q |
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|||||| |||| ||||| || ||| | ||||||||||||||||||||||| |||||| ||||||| |
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| T |
39576979 |
tctaaaagccatccagctgctttgacgaccaacaagtatggaattggaaaacgggaattgttcaaa |
39576914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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