View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14556_high_4 (Length: 417)
Name: NF14556_high_4
Description: NF14556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14556_high_4 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 53492132 - 53491713
Alignment:
| Q |
1 |
tttggtgaattagtcttggatattgtttttatcatgcacatctactttatattggaacttgtttatagtcccattttagggtgcttattcaaattttgat |
100 |
Q |
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| T |
53492132 |
tttggtgaattagtcttggatattgtttttatcatgcacatctactttatattggaacttgtttatagtcccattttagggtgcttattcaaattttgat |
53492033 |
T |
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| Q |
101 |
tgcaggagtcgtgagttcctttggcaagaaggtcacagtgcttttgcaacagaggatgaagcacatgcagaggtattccgtc---tagttattttaggaa |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
53492032 |
tgcaggagtcgtgagttcctttggcaagaaggtcacagtgcttttgcaacagaggatgaagcacatgcagaggtattccgtcaagtagttattttaggaa |
53491933 |
T |
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| Q |
198 |
tctgccttaatatatgcatctttggcatctgtaatgagtatttgaggcctttcctcctgttcaattttcctaggcatttattccaaacactggttgtggg |
297 |
Q |
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| T |
53491932 |
tctgccttaatatatgcatctttggcatctgtaatgagtatttgaggcctttcctcctgttcaattttcctaggcatttattccaaacactggttgtggg |
53491833 |
T |
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| Q |
298 |
atacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaagatatgaagggagagaaagcaatggtttggcaga |
397 |
Q |
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| T |
53491832 |
atacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaagatatgaagggagagaaagcaatggtttggcaga |
53491733 |
T |
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| Q |
398 |
attcatggggctattctact |
417 |
Q |
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| T |
53491732 |
attcatggggctattctact |
53491713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 255 - 417
Target Start/End: Complemental strand, 53499468 - 53499306
Alignment:
| Q |
255 |
tgttcaattttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggta |
354 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
53499468 |
tgttcagttttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgcttgggacaaaagtttgctgaaaagttcgaggta |
53499369 |
T |
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| Q |
355 |
aaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattctact |
417 |
Q |
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| T |
53499368 |
aaatttgaagataagaagggagagaaagcaatggtttggcagaactcatggggctattctact |
53499306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 46 - 241
Target Start/End: Complemental strand, 53500085 - 53499888
Alignment:
| Q |
46 |
tttatattggaacttgtttatagtcccattttagggtgcttattcaaattttgattgcaggagtcgtgagttcctttggcaagaaggtcacagtgctttt |
145 |
Q |
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| T |
53500085 |
tttatattgaaacttgttcatagtcccatttt-gggtgcttatacaaattttgattgcaggagtcgtgagtttctttggcaagaaggtcacggtgctttt |
53499987 |
T |
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| Q |
146 |
gcaacagaggatgaagcacatgcagaggtattccgtc---tagttattttaggaatctgccttaatatatgcatctttggcatctgtaatgagtatttg |
241 |
Q |
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| T |
53499986 |
gcaacagaggatgaagcacatgcagaggtattccatcaagtagttattttaggaatctgccttactatatgcatttttggcatctgtaatgagtctttg |
53499888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 255 - 417
Target Start/End: Complemental strand, 16070576 - 16070414
Alignment:
| Q |
255 |
tgttcaattttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggta |
354 |
Q |
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||||||||||| |||||| ||||||||||||| |||| ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||| || |
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| T |
16070576 |
tgttcaatttttctaggcttttattccaaacattggtcgtgggatacaaggtgcagctacccattgtttgggacaaaagtttgctgagaagtttgagata |
16070477 |
T |
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| Q |
355 |
aaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattctact |
417 |
Q |
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|| |||||||||| ||||| ||||||| |||||||||||||||| |||||||| | ||||||| |
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| T |
16070476 |
aactttgaagataagaaggtagagaaaacaatggtttggcagaactcatgggggttttctact |
16070414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 16071337 - 16071131
Alignment:
| Q |
20 |
atattgtttttatcatgcacatctactttatattggaacttg--tttatagtcccattttagggtgcttattcaaattttgattgcaggagtcgtgagtt |
117 |
Q |
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| T |
16071337 |
atattgtttttatcacgcacatctactttgtattagaacttgcatatatagtat-attttaagcag-ttagacaaattttgattgcaggagtcgtgagtt |
16071240 |
T |
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| Q |
118 |
cctttggcaagaaggtcacagtgcttttgcaacagaggatgaagcacatgcagaggtattccgtc---tagttattttaggaatctgccttaatatatgc |
214 |
Q |
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|||||||||||||| |||||||||||||| | ||||| |||||| ||||||||||||||| || ||||| |||||||||| ||||||||||| ||| |
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| T |
16071239 |
tctttggcaagaaggacacagtgcttttgcttctgaggaagaagcagatgcagaggtattccatcaagtagttgttttaggaatttgccttaatatttgc |
16071140 |
T |
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| Q |
215 |
atctttggc |
223 |
Q |
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|| |||||| |
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| T |
16071139 |
atatttggc |
16071131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 264 - 411
Target Start/End: Original strand, 45354908 - 45355055
Alignment:
| Q |
264 |
ttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaa |
363 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||||||| ||||||| |||||| ||| ||| ||| |||| | |||| |
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| T |
45354908 |
ttcctaggcatttattccaaacactggtcgtggtatacaaggtgcaacttctcattgtttgggacaaaattttgctaaaatgtttgagataaactatgaa |
45355007 |
T |
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| Q |
364 |
gatatgaagggagagaaagcaatggtttggcagaattcatggggctat |
411 |
Q |
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| T |
45355008 |
aatgagaagggagagaaagcaatggtctggcagaactcgtgggcctat |
45355055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 23 - 179
Target Start/End: Original strand, 45354189 - 45354343
Alignment:
| Q |
23 |
ttgtttttatcatgcacatctactttatattggaacttgtttatagtcccattttagggtgcttattcaaattttgattgcaggagtcgtgagttccttt |
122 |
Q |
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|||||||||||||| |||| ||||| ||| || |||| | |||||||| |||| ||||| ||||| | |||||| ||||||||||||||||||| |||| |
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| T |
45354189 |
ttgtttttatcatgtacatttacttcgtat-ggcacttttgtatagtcc-atttcagggtacttataccaattttaattgcaggagtcgtgagtttcttt |
45354286 |
T |
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| Q |
123 |
ggcaagaaggtcacagtgcttttgcaacagaggatgaagcacatgcagaggtattcc |
179 |
Q |
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|||||||||| |||| ||||||||||||| |||| |||||| || |||||||||||| |
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| T |
45354287 |
ggcaagaaggacacactgcttttgcaacaaaggaggaagcagatacagaggtattcc |
45354343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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