View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14556_low_11 (Length: 380)
Name: NF14556_low_11
Description: NF14556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14556_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 28281837 - 28281474
Alignment:
| Q |
1 |
gcaagagaacgccctgaaattaagttaaagttgtggtcagagaatagtttttgaaaaacaaaatctactaatactatgttaaaccatctacacaaatttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28281837 |
gcaagagaacgccctgaaattaagttaaagttgtggtcagagaatagtttttgaaaaacaaaatctactaatactatgttaaaccatctacacaaatttg |
28281738 |
T |
|
| Q |
101 |
tgaataacagaaaaatacatatcggtccacaatgtattcactaaccctgtatgctttaattacgaatgactaatccacaaatctgaaatccatcatttta |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28281737 |
tgaataacagaaaaatacatattggtccacaatgtattcactaaccctgtatgctttaattacgaatgactaatccacaaatctgaaatccgtcatttta |
28281638 |
T |
|
| Q |
201 |
gtatattttattaggaaatcactctttttgcataaaataaatgtgaaatgttatggacaagattctttaaagaatgatcacaatatcaaaataaccaatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28281637 |
gtatattttattaggaaatcactctttttgcataaaacaaatgtgaaatgttatggacaagattctttaaagaatgatcacaatatcaaaataaccaatt |
28281538 |
T |
|
| Q |
301 |
tctatagaagctttaatgaatggttacctgcagagcccatttttcaagattgccatgacgtaga |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28281537 |
tctatagaagctttaatgaatggttacctgcagagcccatttttcaagattgccatgacgtaga |
28281474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 28290101 - 28290039
Alignment:
| Q |
1 |
gcaagagaacgccctgaaattaagttaaagttgtggtcagagaatagtttttgaaaaacaaaat |
64 |
Q |
| |
|
||||||||||||||||||||||| | |||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
28290101 |
gcaagagaacgccctgaaattaa-tcaaagctgtgatcagagaatagtttttgaaaaacaaaat |
28290039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 354
Target Start/End: Complemental strand, 28289632 - 28289592
Alignment:
| Q |
314 |
taatgaatggttacctgcagagcccatttttcaagattgcc |
354 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28289632 |
taatcaatggttacctgcaaagcccatttttcaagattgcc |
28289592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University