View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14556_low_12 (Length: 355)

Name: NF14556_low_12
Description: NF14556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14556_low_12
NF14556_low_12
[»] chr8 (2 HSPs)
chr8 (13-355)||(34005612-34005954)
chr8 (13-355)||(34015751-34016093)
[»] chr5 (1 HSPs)
chr5 (13-355)||(33153108-33153450)


Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 355
Target Start/End: Original strand, 34005612 - 34005954
Alignment:
Q  13 aatctaaacaagtgcacttagcatacatcgctcgaaatatctactatttattatgtgtcaataaaacttaccttcttacacgttgatgttgtaaacaaga 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34005612 aatctaaacaagtgcacttagcatacatcgctcgaaatatctactatttattatgtgtcaataaaacttaccttcttacacgttgatgttgtaaactaga 34005711  T
Q  113 atactccttgatatcaattcgcagatcttcaaaacaatttagcaattggcggagacgatgtgttgaatccacagattttgtaaaaaccagtcacttttct 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34005712 atactccttgatatcaattcgcagatcttcaaaacaatttagcaattggcagagacgatgtgttgaatccacagattttgtaaaaaccagacacttttct 34005811  T
Q  213 tctcccagggatttaaaaagggcaattaaatataaaggcttgtccnnnnnnncacaaatctacaaaaatataaatctaattacaaggtagctgcagatta 312  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34005812 tctcccagggatttcaaaagggcaattaaatataaaggcttgacctttttttcacaaatctacaaaaatataaatctaattacaaggtagctgcagatta 34005911  T
Q  313 taattcatccatttttaaattaaagaaaatgcagatgtgtgtt 355  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34005912 taattcatccatttttaaattaaagaaaatgcagatgtgtgtt 34005954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 355
Target Start/End: Original strand, 34015751 - 34016093
Alignment:
Q  13 aatctaaacaagtgcacttagcatacatcgctcgaaatatctactatttattatgtgtcaataaaacttaccttcttacacgttgatgttgtaaacaaga 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34015751 aatctaaacaagtgcacttagcatacatcgctcgaaatatctactatttattatgtgtcaataaaacttaccttcttacacgttgatgttgtaaactaga 34015850  T
Q  113 atactccttgatatcaattcgcagatcttcaaaacaatttagcaattggcggagacgatgtgttgaatccacagattttgtaaaaaccagtcacttttct 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34015851 atactccttgatatcaattcgcagatcttcaaaacaatttagcaattggcagagacgatgtgttgaatccacagattttgtaaaaaccaggcacttttct 34015950  T
Q  213 tctcccagggatttaaaaagggcaattaaatataaaggcttgtccnnnnnnncacaaatctacaaaaatataaatctaattacaaggtagctgcagatta 312  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34015951 tctcccagggatttcaaaagggcaattaaatataaaggcttgacctttttttcacaaatctacaaaaatataaatctaattacaaggtagctgcagatta 34016050  T
Q  313 taattcatccatttttaaattaaagaaaatgcagatgtgtgtt 355  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34016051 taattcatccatttttaaattaaagaaaatgcagatgtgtgtt 34016093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 13 - 355
Target Start/End: Original strand, 33153108 - 33153450
Alignment:
Q  13 aatctaaacaagtgcacttagcatacatcgctcgaaatatctactatttattatgtgtcaataaaacttaccttcttacacgttgatgttgtaaacaaga 112  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  33153108 aatctaaacaagtgcacttagcatacatcactcgaaatatctactatttattatgtgtcaataaaacttaccttcttacacgttgatgttgtaaactaga 33153207  T
Q  113 atactccttgatatcaattcgcagatcttcaaaacaatttagcaattggcggagacgatgtgttgaatccacagattttgtaaaaaccagtcacttttct 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33153208 atactccttgatatcaattcgcagatcttcaaaacaatttagcaattggcagagacgatgtgttgaatccacagattttgtaaaaaccaggcacttttct 33153307  T
Q  213 tctcccagggatttaaaaagggcaattaaatataaaggcttgtccnnnnnnncacaaatctacaaaaatataaatctaattacaaggtagctgcagatta 312  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33153308 tctcccagggatttcaaaagggcaattaaatataaaggcttgacctttttttcacaaatctacaaaaatataaatctaattacaaggtagctgcagatta 33153407  T
Q  313 taattcatccatttttaaattaaagaaaatgcagatgtgtgtt 355  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  33153408 taattcatccatttttaaattaaagaaaatgcagatgtgtgtt 33153450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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