View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14556_low_14 (Length: 343)
Name: NF14556_low_14
Description: NF14556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14556_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 6 - 340
Target Start/End: Original strand, 43823110 - 43823444
Alignment:
| Q |
6 |
ataaagtaccttccaatgatgttgcaacacccgtgaaattttttatcaaaagattatgcaaatcctctccagcccagataggatatatgcagatattaac |
105 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43823110 |
ataaagtaccttccagtgatgttgcaacacccgtgaaattttttatcaaaagattatgcaaatcctctccagcccagataggatatatgcagatattaac |
43823209 |
T |
|
| Q |
106 |
tcccaaagatacagcagcaccaagtgcaatgagcaaaaatctacttatagatgtatcaagaaattcgccactatgataaccagatactgtaatgtagcaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43823210 |
tcccaaagatacagcagcaccaagtgcaatgagcaaaaatctacttatagatgtatcaagaaattcgccactatgataaccagatactgtaatgtagcaa |
43823309 |
T |
|
| Q |
206 |
taagtaatcaagaacacacggaacccatattcataaggctacaaagttgggtacaattttgcataggtaatacaaaatccaacaatgaatgtactgataa |
305 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43823310 |
taagtaatcaagaacacacggaacccatattcataaggcttcaaagttgggtacaattttgcataggtaatacaaaatccaacaatgaatgtactgataa |
43823409 |
T |
|
| Q |
306 |
tcactataacttcttcccatactccagcctatgct |
340 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| |
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| T |
43823410 |
tcactataacttcttcccattctccagccaatgct |
43823444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 6 - 340
Target Start/End: Original strand, 43816147 - 43816481
Alignment:
| Q |
6 |
ataaagtaccttccaatgatgttgcaacacccgtgaaattttttatcaaaagattatgcaaatcctctccagcccagataggatatatgcagatattaac |
105 |
Q |
| |
|
||||| |||||||||| || |||||||||||| |||||||||||| || ||||||||||| |||||| ||||||||||||||||||||||||||||| || |
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| T |
43816147 |
ataaaataccttccaaagacgttgcaacacccatgaaattttttaccacaagattatgcagatcctcgccagcccagataggatatatgcagatattgac |
43816246 |
T |
|
| Q |
106 |
tcccaaagatacagcagcaccaagtgcaatgagcaaaaatctacttatagatgtatcaagaaattcgccactatgataaccagatactgtaatgtagcaa |
205 |
Q |
| |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
43816247 |
tcccaaagacacagcagcaccaagcgcaatgagcaaaaatctacttatagatgtatcaagaaattcgccagtatgataaccagataccgtaatgtagcaa |
43816346 |
T |
|
| Q |
206 |
taagtaatcaagaacacacggaacccatattcataaggctacaaagttgggtacaattttgcataggtaatacaaaatccaacaatgaatgtactgataa |
305 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
43816347 |
taagtgatcaagaacacacggaacccatattcataaggcttcaaagttgggtataattttgcataggtagcgcaaaatccaacaatgaatgtactgatta |
43816446 |
T |
|
| Q |
306 |
tcactataacttcttcccatactccagcctatgct |
340 |
Q |
| |
|
| |||||||||||||||||| |||| ||| ||||| |
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|
| T |
43816447 |
taactataacttcttcccattctcctgccaatgct |
43816481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 23 - 340
Target Start/End: Original strand, 43830387 - 43830704
Alignment:
| Q |
23 |
gatgttgcaacacccgtgaaattttttatcaaaagattatgcaaatcctctccagcccagataggatatatgcagatattaactcccaaagatacagcag |
122 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| |||||||| |||||| ||||| ||||| |||||||||||||||||||| ||||||||||| ||||||| |
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| T |
43830387 |
gatgttgcaacgcccatgaaattttttatcacaagattatacaaatcttctccggcccaaataggatatatgcagatattgactcccaaagagacagcag |
43830486 |
T |
|
| Q |
123 |
caccaagtgcaatgagcaaaaatctacttatagatgtatcaagaaattcgccactatgataaccagatactgtaatgtagcaataagtaatcaagaacac |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43830487 |
caccaagtgcaatgagcaaaaatctacttatagatgtatcaagaaactcaccagtatgataaccagatactgtaatgtagcaataagtgatcaagaacac |
43830586 |
T |
|
| Q |
223 |
acggaacccatattcataaggctacaaagttgggtacaattttgcataggtaatacaaaatccaacaatgaatgtactgataatcactataacttcttcc |
322 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| || | ||||||||| ||| ||| |||||||||||||||||| ||||||| ||||||| ||||||| |
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| T |
43830587 |
acggaaaccatattcataaggctttaaagttggatagagttttgcataagtagcacagaatccaacaatgaatgtagtgataataactataatttcttcc |
43830686 |
T |
|
| Q |
323 |
catactccagcctatgct |
340 |
Q |
| |
|
||| |||||||| ||||| |
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|
| T |
43830687 |
cattctccagccaatgct |
43830704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 197 - 340
Target Start/End: Original strand, 4999146 - 4999289
Alignment:
| Q |
197 |
atgtagcaataagtaatcaagaacacacggaacccatattcataaggctacaaagttgggtacaattttgcataggtaatacaaaatccaacaatgaatg |
296 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| | |||||||||| ||| |||||| ||||| | ||||||||| ||| ||| |||||||||||||||| |
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|
| T |
4999146 |
atgtagcaataagtgatcaagaacacacggaaacgatattcataacgcttcaaagtagggtagagttttgcataagtagcacagaatccaacaatgaatg |
4999245 |
T |
|
| Q |
297 |
tactgataatcactataacttcttcccatactccagcctatgct |
340 |
Q |
| |
|
|||| |||| ||||||| |||||||||| |||||||| ||||| |
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|
| T |
4999246 |
tactactaataactataatttcttcccattctccagccaatgct |
4999289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 31807734 - 31807505
Alignment:
| Q |
13 |
accttccaatgatgttgcaacacccgtgaaattttttatcaaaagattatgcaaatcctctccagcccagataggatatatgcagatattaactcccaaa |
112 |
Q |
| |
|
|||||| ||||||||||| || || ||||||||||| | ||||| ||| | ||| || || ||||| || ||||||||||| | ||| || || | | |
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| T |
31807734 |
accttctaatgatgttgctacgcctgtgaaatttttcgcgacaagataatgtagatcttcaccggcccatattggatatatgcacacatttacgccaaca |
31807635 |
T |
|
| Q |
113 |
gatacagcagcaccaagtgcaatgagcaaaaatctacttatagatgtatcaagaaattcgccactatgataaccagatactgtaatgtagcaataagtaa |
212 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || | | ||||| |||||| || || | |||| |||||||| ||| ||| ||||| || | |
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|
| T |
31807634 |
gatacagcagcaccaagagcaatgagcaaaaatctgtttgttgctgtatgaagaaagtctccggttcgatatccagatacaataacgtaacaataggtga |
31807535 |
T |
|
| Q |
213 |
tcaagaacacacggaacccatattcataag |
242 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |
|
|
| T |
31807534 |
tcaagaacacacggaatccatattcataag |
31807505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 197 - 340
Target Start/End: Original strand, 34803955 - 34804098
Alignment:
| Q |
197 |
atgtagcaataagtaatcaagaacacacggaacccatattcataaggctacaaagttgggtacaattttgcataggtaatacaaaatccaacaatgaatg |
296 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||| ||| |||| |||||| ||||| | ||||||||| ||| ||| |||||||||||||||| |
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|
| T |
34803955 |
atgtagcaataagtgatcaagaacacacggaaaccatattgatatggcttcaaagtagggtagagttttgcataagtagcacagaatccaacaatgaatg |
34804054 |
T |
|
| Q |
297 |
tactgataatcactataacttcttcccatactccagcctatgct |
340 |
Q |
| |
|
|||| |||| ||||||| |||||||||| || ||||| ||||| |
|
|
| T |
34804055 |
tactactaataactataatttcttcccattcttcagccaatgct |
34804098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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