View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14556_low_18 (Length: 294)
Name: NF14556_low_18
Description: NF14556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14556_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 34290005 - 34289732
Alignment:
| Q |
1 |
ataaagggcatgtggcaactattagcttcgataaacttgattgtgtatcactttcaagcattccaaagcttgtgagtatttgttcagattcactatggtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34290005 |
ataaagggcatgtggcaactattagcttcaataaacttgattgtgtatcactttcaagccttccaaagcttgtgagtatttgttcagattcactttggtt |
34289906 |
T |
|
| Q |
101 |
agaatgtccatccttgaagcaatttgatattgaggattgtcctatcttggagatgtatttcttaccaaccaatattgatgcaaagcatgacaacctcaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34289905 |
agaatgtccatccttgaagcaatttgatattgaggattgtcctatcttggagatgtatttcttaccaaccaatattgatgcaaagcatgacaacctcaat |
34289806 |
T |
|
| Q |
201 |
aacgcaaaagatgttggttttcaaagtttccaagaaaacaactcaaggtcttcaagttggtcctctagaaatga |
274 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34289805 |
aacgtaaaagatgttggttttcaaagtttccaagaaaacaactcaaggtcttcaagttggtcctctagaaatga |
34289732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 34374392 - 34374473
Alignment:
| Q |
61 |
ttccaaagcttgtgagtatttgttcagattcactatggttagaatgtccatccttgaagcaatttgatattgaggattgtcc |
142 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | |||||||| ||||||||||| | ||||| | ||||| |||||||| |
|
|
| T |
34374392 |
ttccaaagcttgtgaatatttgttcagattctgttgagttagaatatccatccttgagggaatttaagattgatgattgtcc |
34374473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 15894016 - 15893848
Alignment:
| Q |
1 |
ataaagggcatgtggcaactattagcttcgataaacttgattgtgtatcactttcaagcattccaaagcttgtgagtatttgttcagattcactatggtt |
100 |
Q |
| |
|
||||||| |||||| ||||||| | ||| |||||||| || | ||||||||||||| |||||||||||||||||||||||||||| | ||| ||||| |
|
|
| T |
15894016 |
ataaaggacatgtgaaaactattggtttcaataaactttgttatttatcactttcaagacttccaaagcttgtgagtatttgttcagaattactttggtt |
15893917 |
T |
|
| Q |
101 |
agaatgtccatccttgaagcaatttgatattgaggattgtcctatcttggagatgtatttcttaccaac |
169 |
Q |
| |
|
||||| |||||||||||||||||||||| ||| | |||||||||| |||||||| | |||||||||||| |
|
|
| T |
15893916 |
agaatatccatccttgaagcaatttgatgttgtgcattgtcctatgttggagatctctttcttaccaac |
15893848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 15893797 - 15893749
Alignment:
| Q |
205 |
caaaagatgttggttttcaaagtttccaagaaaacaactcaaggtcttc |
253 |
Q |
| |
|
||||||||||| ||||||| ||||| |||||||||| ||||||||||| |
|
|
| T |
15893797 |
caaaagatgttagttttcacagtttaaaagaaaacaattcaaggtcttc |
15893749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University