View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14556_low_2 (Length: 609)

Name: NF14556_low_2
Description: NF14556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14556_low_2
NF14556_low_2
[»] chr1 (8 HSPs)
chr1 (8-327)||(46239096-46239415)
chr1 (325-426)||(46238966-46239067)
chr1 (162-324)||(28622872-28623033)
chr1 (111-146)||(52267926-52267961)
chr1 (12-76)||(37346157-37346221)
chr1 (164-324)||(37346973-37347132)
chr1 (14-71)||(35508725-35508782)
chr1 (291-327)||(19910038-19910074)
[»] chr7 (9 HSPs)
chr7 (49-323)||(34183113-34183386)
chr7 (49-323)||(34203702-34203975)
chr7 (111-311)||(31804702-31804903)
chr7 (8-227)||(15524521-15524747)
chr7 (49-216)||(25102900-25103065)
chr7 (232-324)||(18503106-18503199)
chr7 (72-151)||(3480595-3480674)
chr7 (162-213)||(17508676-17508727)
chr7 (162-213)||(17544487-17544538)
[»] chr8 (6 HSPs)
chr8 (14-313)||(511701-511998)
chr8 (199-324)||(16456537-16456661)
chr8 (162-324)||(40953270-40953431)
chr8 (12-151)||(8490824-8490964)
chr8 (12-70)||(40953534-40953592)
chr8 (12-151)||(43597064-43597195)
[»] chr5 (9 HSPs)
chr5 (72-327)||(8095905-8096156)
chr5 (24-322)||(39351320-39351620)
chr5 (111-216)||(12657933-12658038)
chr5 (171-327)||(7883743-7883898)
chr5 (284-324)||(5868351-5868391)
chr5 (12-76)||(21091062-21091126)
chr5 (12-76)||(31078167-31078231)
chr5 (24-76)||(33007808-33007860)
chr5 (232-324)||(33134128-33134219)
[»] chr3 (8 HSPs)
chr3 (12-216)||(43462772-43462978)
chr3 (73-229)||(46663338-46663498)
chr3 (161-312)||(21153348-21153498)
chr3 (14-145)||(41864791-41864919)
chr3 (443-496)||(51522864-51522917)
chr3 (12-76)||(40700825-40700889)
chr3 (12-76)||(28457582-28457646)
chr3 (31-94)||(44762451-44762512)
[»] chr4 (12 HSPs)
chr4 (32-169)||(3319924-3320061)
chr4 (162-318)||(34513713-34513868)
chr4 (12-76)||(37910463-37910527)
chr4 (158-216)||(3319849-3319907)
chr4 (12-62)||(45498973-45499023)
chr4 (162-223)||(11138740-11138801)
chr4 (162-207)||(17702285-17702330)
chr4 (139-183)||(54103163-54103207)
chr4 (162-313)||(5787260-5787410)
chr4 (14-76)||(34514142-34514204)
chr4 (12-76)||(36198615-36198679)
chr4 (12-76)||(44289426-44289490)
[»] chr6 (4 HSPs)
chr6 (12-75)||(32329639-32329702)
chr6 (12-76)||(12255411-12255475)
chr6 (12-97)||(12267591-12267675)
chr6 (12-76)||(9315106-9315170)
[»] chr2 (4 HSPs)
chr2 (111-182)||(12603952-12604023)
chr2 (162-213)||(13996112-13996163)
chr2 (12-76)||(13995538-13995602)
chr2 (262-318)||(27338768-27338824)
[»] scaffold0702 (1 HSPs)
scaffold0702 (151-216)||(3922-3987)
[»] scaffold0662 (1 HSPs)
scaffold0662 (151-216)||(4115-4180)
[»] scaffold0957 (2 HSPs)
scaffold0957 (150-209)||(1587-1646)
scaffold0957 (261-324)||(1697-1760)


Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 8 - 327
Target Start/End: Complemental strand, 46239415 - 46239096
Alignment:
Q  8 atgaacatgataaacgttaatcatatcatatgttagatacacacatgataacaaagatgatataattattatattataattaaatgagaannnnnnnctc 107  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||        |||    
T  46239415 atgaacatgataaacgttaatcatatcatatgttcgatacacacatgataataaagaggatataattattatattataattaaatgagattttttttctc 46239316  T
Q  108 atcattaattaaatattttaaaaacggcatgtaattaatcataaataagtaaggaatgacaacattttaaaaacggaagaatatcatagtaataaataag 207  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46239315 atcattaattaaatattttaaaaatggcatgtaattaatcataaataagtaaggaatgacaacattttaaaaacggaagaatatcatagtaataaataag 46239216  T
Q  208 gaatgaattcttaatcatgtcaaaataatttataacacagcctatactcacatataaaaattacaaaaacaaatcaggatagaatagaaaaattgtttat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46239215 gaatgaattcttaatcatgtcaaaataatttataacacagcctatactcacatataaaaattacaaaaacaaatcaggatagaatagaaaaattgtttat 46239116  T
Q  308 tttatcctatctctttgatg 327  Q
    ||||||||||||||||||||    
T  46239115 tttatcctatctctttgatg 46239096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 325 - 426
Target Start/End: Complemental strand, 46239067 - 46238966
Alignment:
Q  325 atggatgtatcatatcttgtctccctagcaatcagacgacctcttgaagtcttaatcctacttaaatttataaaaaatcctcttaatttcacggttttta 424  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46239067 atggatgtatcatatattgtctccctagcaatcagacgatctcttggagtcttaatcctacttaaatttataaaaaatcctcttaatttcacggttttta 46238968  T
Q  425 ga 426  Q
    ||    
T  46238967 ga 46238966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 162 - 324
Target Start/End: Original strand, 28622872 - 28623033
Alignment:
Q  162 aatgacaacattttaaaaacggaagaatatcatagtaataaataaggaatgaattcttaatcatgtcaaaataatttataacacagcctatactcacata 261  Q
    |||||||| ||||||||||  | |||||||||   |||||||||||||||||  |  |||||   |||  ||||||| ||||||||| ||||||||   |    
T  28622872 aatgacaatattttaaaaatcgcagaatatcaagataataaataaggaatgatcttctaatctcatcaggataatttctaacacagcttatactcagg-a 28622970  T
Q  262 taaaaattacaaaaacaaatcaggatagaatagaaaaattgtttattttatcctatctctttg 324  Q
    |||||||||||||   || ||||||||| |||||||||| ||||||||||| ||||| |||||    
T  28622971 taaaaattacaaaggaaagtcaggataggatagaaaaatagtttattttattctatccctttg 28623033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 111 - 146
Target Start/End: Complemental strand, 52267961 - 52267926
Alignment:
Q  111 attaattaaatattttaaaaacggcatgtaattaat 146  Q
    ||||||||||||||||||||||||||||||||||||    
T  52267961 attaattaaatattttaaaaacggcatgtaattaat 52267926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 37346157 - 37346221
Alignment:
Q  12 acatgataaacgttaatcatatcatatgttagatacacacatgataacaaagatgatataattat 76  Q
    ||||||||||| |||||| |||||| |||| ||| | |||||||||||||| ||||||| |||||    
T  37346157 acatgataaacattaatcctatcatgtgtttgatgcgcacatgataacaaacatgatatcattat 37346221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 164 - 324
Target Start/End: Original strand, 37346973 - 37347132
Alignment:
Q  164 tgacaacattttaaaaacggaagaatatcatagtaataaataaggaatgaattcttaatcatgtcaaaataatttataacacagcctatactcacatata 263  Q
    |||||| ||||| |||| || |||||||||   |||||||||||||||||  |  |||||   |||  ||||||| |||| || | ||||||||   |||    
T  37346973 tgacaatatttttaaaatggcagaatatcaggataataaataaggaatgatcttctaatcccatcatgataatttctaacccatcgtatactcagg-ata 37347071  T
Q  264 aaaattacaaaaacaaatcaggatagaatagaaaaattgtttattttatcctatctctttg 324  Q
     ||||||||||   |||||||||||| |||||||||| |||||||||||| |||| |||||    
T  37347072 gaaattacaaaggaaaatcaggataggatagaaaaatggtttattttatcatatccctttg 37347132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 35508725 - 35508782
Alignment:
Q  14 atgataaacgttaatcatatcatatgttagatacacacatgataacaaagatgatata 71  Q
    ||||||||| ||||||||||||| |||| ||| |||| |||| |||||| ||||||||    
T  35508725 atgataaacattaatcatatcatgtgtttgatgcacatatgacaacaaacatgatata 35508782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 19910074 - 19910038
Alignment:
Q  291 atagaaaaattgtttattttatcctatctctttgatg 327  Q
    |||||||||| |||||||||||| |||||||||||||    
T  19910074 atagaaaaatggtttattttatcttatctctttgatg 19910038  T

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Target: chr7 (Bit Score: 106; Significance: 1e-52; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 49 - 323
Target Start/End: Complemental strand, 34183386 - 34183113
Alignment:
Q  49 cacatgataacaaagatgatataattattatattataattaaatgagaannnnnnnctcatcattaattaaatattttaaaaacggcatgtaattaatca 148  Q
    |||||||||||||| | ||||| |||||| ||||||||||||| |||||       ||| |  |||||||||||||||||| | |||||||||||||| |    
T  34183386 cacatgataacaaataggatatcattattttattataattaaacgagaaaattactctcgtagttaattaaatattttaaatatggcatgtaattaatta 34183287  T
Q  149 taaataagtaaggaatgacaacattttaaaaacggaagaatatcatagtaataaataaggaatgaattcttaatcatgtcaaaataatttataacacagc 248  Q
    |||||||||||| || |||||||||||||||||||||||||||||| ||||||| |||||||||||||  |||| ||||||   ||||||   ||  |||    
T  34183286 taaataagtaagtaaagacaacattttaaaaacggaagaatatcatggtaataagtaaggaatgaatttgtaataatgtcagggtaattttatactaagc 34183187  T
Q  249 ctatactcacatataaaaattacaaaaacaaatcaggatagaatagaaaaattgtttattttatcctatctcttt 323  Q
     ||||||| |  |||||||||| |||  ||| ||||||||| |||||||||| ||||||||||||||||||||||    
T  34183186 ttatactc-cggataaaaattataaaggcaagtcaggataggatagaaaaatagtttattttatcctatctcttt 34183113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 49 - 323
Target Start/End: Complemental strand, 34203975 - 34203702
Alignment:
Q  49 cacatgataacaaagatgatataattattatattataattaaatgagaannnnnnnctcatcattaattaaatattttaaaaacggcatgtaattaatca 148  Q
    |||||||||||||| | ||||| |||||| ||||||||||||| |||||       ||| |  |||||||||||||||||| | |||||||||||||| |    
T  34203975 cacatgataacaaataggatatcattattttattataattaaacgagaaaattactctcgtagttaattaaatattttaaatatggcatgtaattaatta 34203876  T
Q  149 taaataagtaaggaatgacaacattttaaaaacggaagaatatcatagtaataaataaggaatgaattcttaatcatgtcaaaataatttataacacagc 248  Q
    |||||||||||| || |||||||||||||||||||||||||||||| ||||||| |||||||||||||  |||| ||||||   ||||||   ||  |||    
T  34203875 taaataagtaagtaaagacaacattttaaaaacggaagaatatcatggtaataagtaaggaatgaatttgtaataatgtcagggtaattttatactaagc 34203776  T
Q  249 ctatactcacatataaaaattacaaaaacaaatcaggatagaatagaaaaattgtttattttatcctatctcttt 323  Q
     ||||||| |  |||||||||| |||  ||| ||||||||| |||||||||| ||||||||||||||||||||||    
T  34203775 ttatactc-cggataaaaattataaaggcaagtcaggataggatagaaaaatagtttattttatcctatctcttt 34203702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 111 - 311
Target Start/End: Original strand, 31804702 - 31804903
Alignment:
Q  111 attaattaaatattttaaaaacggcatgtaattaatcataaataagtaaggaatgaca--acattttaaaaacggaagaatatcatagtaataaataagg 208  Q
    |||||||||||||||||| ||    ||||||||||| ||||||||||||| |||||||  |||||||||||| |  | |||||||   ||||||||||||    
T  31804702 attaattaaatattttaagaaaaatatgtaattaattataaataagtaagaaatgacacaacattttaaaaatgacataatatcaggataataaataagg 31804801  T
Q  209 aatgaattcttaatcatgtcaaaataatttataacacagcctatactcacatataaaaattacaaaaacaaatcaggatagaatagaaaaattgtttatt 308  Q
    ||||||||  ||||||||||| ||||  || |||| |||  |||||||| | |||||||||| ||| |||| ||||||||| |||  ||||| |||||||    
T  31804802 aatgaatttctaatcatgtcataatagattttaacgcagtttatactca-agataaaaattataaagacaattcaggataggataagaaaatggtttatt 31804900  T
Q  309 tta 311  Q
    |||    
T  31804901 tta 31804903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 15524747 - 15524521
Alignment:
Q  8 atgaacatgataaacgttaatcatatcatatgttagatacacacatgataacaaagatgatataattattatattataatt---aaatgagaannnnnnn 104  Q
    ||||||||||||||  ||||   |||||| | || |||||||||| ||||||||| | ||||| |||||| |||| |||||   |||||||||           
T  15524747 atgaacatgataaaaattaactttatcatttatttgatacacacaggataacaaataggatatcattattttattttaatttttaaatgagaaaattact 15524648  T
Q  105 ctcatcattaattaaatattttaaaaacggcatgtaattaatca---taaataagtaaggaatgacaacattttaaaaacggaagaatatcatagtaata 201  Q
    ||| | ||| ||||||||||||| ||| | |||||||||||| |   |||||||||| | ||| |||||||| ||||| ||||||||||  || ||||||    
T  15524647 ctcgtaatttattaaatattttacaaatgacatgtaattaattagtataaataagtatgaaatcacaacattataaaagcggaagaatactatggtaata 15524548  T
Q  202 aataaggaatg-aattcttaatcatgt 227  Q
    |||||||| || |||| ||||||||||    
T  15524547 aataaggagtgaaatttttaatcatgt 15524521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 216
Target Start/End: Complemental strand, 25103065 - 25102900
Alignment:
Q  49 cacatgataacaaagatgatataattattatattataattaaatgagaannnnnnnctcatcattaattaaatattttaaaaacggcatgtaattaatca 148  Q
    |||||||||||||| |  |||| |||||| |||||||||||||||| ||       ||||| || ||| |||||||  |||||   |||||||||||| |    
T  25103065 cacatgataacaaatagaatatcattattttattataattaaatgaaaaaattactctcataatcaataaaatattaaaaaaaa--catgtaattaatta 25102968  T
Q  149 taaataagtaaggaatgacaacattttaaaaacggaagaatatcatagtaataaataaggaatgaatt 216  Q
    | |||||||||||||  |||  |||||||||| || ||||||||||  |||||||||| |||||||||    
T  25102967 ttaataagtaaggaacaacactattttaaaaatgggagaatatcatgataataaataaagaatgaatt 25102900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 18503106 - 18503199
Alignment:
Q  232 ataatttataacacagcctata--ctcacatataaaaattacaaaaacaaatcaggatagaatagaaaaattgtttattttatcctatctctttg 324  Q
    ||||||| ||||||||||||||  |||| | ||| ||||||||||   |||||||||||| |||| ||||| |||||||||||||||||||||||    
T  18503106 ataatttctaacacagcctatatactca-agatagaaattacaaatgaaaatcaggataggataggaaaatggtttattttatcctatctctttg 18503199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 3480595 - 3480674
Alignment:
Q  72 attattatattataattaaatgagaannnnnnnctcatcattaattaaatattttaaaaacggcatgtaattaatcataa 151  Q
    ||||||||||||||||||||||| ||       ||||| ||| ||||||||||||||||| | |||||||||||| ||||    
T  3480595 attattatattataattaaatgaaaaaagtactctcataattgattaaatattttaaaaatgacatgtaattaattataa 3480674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 17508676 - 17508727
Alignment:
Q  162 aatgacaacattttaaaaacggaagaatatcatagtaataaataaggaatga 213  Q
    ||||||||||||||||||| || |||| |||||  |||||||||||||||||    
T  17508676 aatgacaacattttaaaaatggcagaacatcatgataataaataaggaatga 17508727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 213
Target Start/End: Complemental strand, 17544538 - 17544487
Alignment:
Q  162 aatgacaacattttaaaaacggaagaatatcatagtaataaataaggaatga 213  Q
    ||||||||||||||||||| || |||| |||||  |||||||||||||||||    
T  17544538 aatgacaacattttaaaaatggcagaacatcatgataataaataaggaatga 17544487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 8e-38; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 14 - 313
Target Start/End: Complemental strand, 511998 - 511701
Alignment:
Q  14 atgataaacgttaatcatatcatatgttagatacacacatgataacaaagatgatataattattatattataattaaatgagaannnnnnnctcatcatt 113  Q
    ||||||||| |||||| |||||| |||| ||| | ||||||||| |||| | ||||| |||||| | |||||| ||||||||||        || | |||    
T  511998 atgataaacattaatcttatcatgtgtttgattcgcacatgataccaaataagatatcattatttt-ttataactaaatgagaaacttactttcgtaatt 511900  T
Q  114 aattaaatattttaaaaacggcatgtaattaatcataaataagtaaggaatgacaacattttaaaaacggaagaatatc-atagtaataaataaggaatg 212  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |  | ||||||  | |||||| || ||||||     
T  511899 aattaaatattttaaaaacggcatgtaattaattataaataagtaaggaatgacaacattttaaaattgacataatatctttggtaatatatgaggaata 511800  T
Q  213 aattcttaatcatgtcaaaataatttataacacagcctatactcacatataaaaattacaaaaacaaatcaggatagaatagaaaaattgtttattttat 312  Q
    ||||  |||||||||||  ||| | | |||| |||| ||||||  ||||||||||||||||| |||| | | ||||  |||||||||| |||| ||||||    
T  511799 aatttctaatcatgtcatgatagtatctaacccagcatatact--catataaaaattacaaagacaagtgatgatatgatagaaaaatggtttgttttat 511702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 199 - 324
Target Start/End: Complemental strand, 16456661 - 16456537
Alignment:
Q  199 ataaataaggaatgaattcttaatcatgtcaaaataatttataacacagcctatactcacatataaaaattacaaaaacaaatcaggatagaatagaaaa 298  Q
    ||||||||| |||  ||| |||||| | |||| ||||||| ||||  ||| |||||||| | |||| |||||||||| ||||||||||||| ||| ||||    
T  16456661 ataaataagaaatatatttttaatcctatcaagataatttctaacgtagcttatactca-agataagaattacaaaagcaaatcaggataggataaaaaa 16456563  T
Q  299 attgtttattttatcctatctctttg 324  Q
    || |||||||||||| ||||||||||    
T  16456562 atagtttattttatcttatctctttg 16456537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 162 - 324
Target Start/End: Complemental strand, 40953431 - 40953270
Alignment:
Q  162 aatgacaacattttaaaaacggaagaatatcatagtaataaataaggaatgaattcttaatcatgtcaaaataatttataacacagcctatactcacata 261  Q
    |||||||| |||||||||| || |||||||||  ||||||||||||||||||  |  |||||   | | |||||||| |||| |||||||||||||   |    
T  40953431 aatgacaatattttaaaaagggcagaatatcaaggtaataaataaggaatgatcttctaatcccattataataatttctaacccagcctatactca-gga 40953333  T
Q  262 taaaaattacaaaaacaaatcaggatagaatagaaaaattgtttattttatcctatctctttg 324  Q
    |||||||||||||   || ||||||||  ||||||||||  ||||||| ||| ||||||||||    
T  40953332 taaaaattacaaaggaaagtcaggatatgatagaaaaatgatttatttcatcatatctctttg 40953270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 12 - 151
Target Start/End: Original strand, 8490824 - 8490964
Alignment:
Q  12 acatgataaacgttaatcatatcatatgttagatacacacatgataacaaagatgatataattattatattataattaaat-gagaannnnnnnctcatc 110  Q
    ||||||||||| |||||  |||||| |||| ||| ||||||  |||||||| ||||||| |||||  ||||||||||||||  | ||       |||||     
T  8490824 acatgataaacattaatattatcatgtgtttgatgcacacaacataacaaacatgatatcattatcttattataattaaataaaaaaatttactctcata 8490923  T
Q  111 attaattaaatattttaaaaacggcatgtaattaatcataa 151  Q
    |||||||||||||| |||||| | |||||||||||| ||||    
T  8490924 attaattaaatattataaaaatgacatgtaattaattataa 8490964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 40953592 - 40953534
Alignment:
Q  12 acatgataaacgttaatcatatcatatgttagatacacacatgataacaaagatgatat 70  Q
    ||||||||||| ||||||||||||| |||| ||| | |||||||||||||| |||||||    
T  40953592 acatgataaacattaatcatatcatgtgtttgatgcgcacatgataacaaacatgatat 40953534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 151
Target Start/End: Complemental strand, 43597195 - 43597064
Alignment:
Q  12 acatgataaacgttaatcatatcatatgttagatacacacatgataacaaagatgatataattattatattataattaaatgagaannnnnnnctcatca 111  Q
    ||||||||||| |||||| ||||||||||| |||   |||||||||||||| || ||||         ||||||||||||||| ||       ||||| |    
T  43597195 acatgataaacattaatcctatcatatgtttgatgggcacatgataacaaatataatat--------cattataattaaatgaaaaaattgttctcataa 43597104  T
Q  112 ttaattaaatattttaaaaacggcatgtaattaatcataa 151  Q
     ||||||||||||||||||| ||||||| |||||| ||||    
T  43597103 ctaattaaatattttaaaaatggcatgttattaattataa 43597064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 72 - 327
Target Start/End: Complemental strand, 8096156 - 8095905
Alignment:
Q  72 attattatattataattaaatgagaannnnnnnctcatcattaattaaatattttaaaaacggcatgtaattaatcataaataagtaaggaatgacaaca 171  Q
    |||||| ||| |||||||||||||||       ||| | ||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||    
T  8096156 attattttatcataattaaatgagaaaattactctcgttattaattaaatattttaaaaacgacatgtaattaattataaataagtaaagaatgacaaca 8096057  T
Q  172 ttttaaaaacggaagaatatcatagtaataaataaggaatgaattcttaatcatgtcaaaataatttataacacagcctatactcacatataaaaattac 271  Q
       ||||||||  | ||||| ||  |||||||||  ||||||||| |||||| | |||| ||| ||| |||| || | |||| |||   |||||||||||    
T  8096056 ---taaaaacgacataatatgatgataataaatatagaatgaatttttaatcttatcaagatagtttctaactcaacatatattca-ggataaaaattac 8095961  T
Q  272 aaaaacaaatcaggatagaatagaaaaattgtttattttatcctatctctttgatg 327  Q
    ||| | || | ||||||||||||||||||  |||||||||| ||||||||||||||    
T  8095960 aaatataagttaggatagaatagaaaaataatttattttattctatctctttgatg 8095905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 24 - 322
Target Start/End: Complemental strand, 39351620 - 39351320
Alignment:
Q  24 ttaatcatatcatatgttagatacacacatgataacaaagatgatataattattatattataattaaatgagaannnnnnnctcatcattaattaaatat 123  Q
    ||||||||||||| |||| ||| | |||||||||||||| ||||||| |||||| |||||||||||||||||||       ||  | |||||||||||||    
T  39351620 ttaatcatatcatgtgtttgatgcgcacatgataacaaatatgatatcattattttattataattaaatgagaaaattattcttgtaattaattaaatat 39351521  T
Q  124 tttaaaaacggcatgtaattaatcataaa---taagtaaggaatgacaacattttaaaaacggaagaatatcatagtaataaataaggaatgaattctta 220  Q
    |||||||| |||| ||||||||| |||||   |||||||  ||||||||||||||||  | |  | |||| ||| |||| ||||||| ||| |||| |||    
T  39351520 tttaaaaatggcacgtaattaattataaatagtaagtaacaaatgacaacattttaattatgacataataccatggtaacaaataagaaataaattttta 39351421  T
Q  221 atcatgtcaaaataatttataacacagcctatactcacatataaaaattacaaaaacaaatcaggatagaatagaaaaattgtttattttatcctatctc 320  Q
    |||||||||  |||||||||||| || |||| |||||   |||||| ||||||| |||| | || |||  |||  |||||  |||||||||| |||||||    
T  39351420 atcatgtcaggataatttataacccaacctacactca-ggataaaatttacaaagacaagttagtatatgatatgaaaatgatttattttattctatctc 39351322  T
Q  321 tt 322  Q
    ||    
T  39351321 tt 39351320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 111 - 216
Target Start/End: Complemental strand, 12658038 - 12657933
Alignment:
Q  111 attaattaaatattttaaaaacggcatgtaattaatcataaataagtaaggaatgacaacattttaaaaacggaagaatatcatagtaataaataaggaa 210  Q
    |||||||||| |||||||||||| |||||||||||| |||||||| ||| |||||||||||||| ||||||| ||||||| ||| |||||||||||| ||    
T  12658038 attaattaaacattttaaaaacgacatgtaattaattataaataaataaagaatgacaacatttgaaaaacgaaagaataccattgtaataaataagaaa 12657939  T
Q  211 tgaatt 216  Q
    ||||||    
T  12657938 tgaatt 12657933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 171 - 327
Target Start/End: Original strand, 7883743 - 7883898
Alignment:
Q  171 attttaaaaacggaagaatatcatagtaataaataaggaatgaattcttaatcatgtcaaaataatttataacacagcctatactcacatataaaaatta 270  Q
    |||||||||| || ||||||| |   |||||||||||||||||  |  |||||   |||  ||||||| |||  ||||||||||||| | ||| ||||||    
T  7883743 attttaaaaatggcagaatataaagataataaataaggaatgatcttctaatcccatcaggataatttctaatccagcctatactcaga-atagaaatta 7883841  T
Q  271 caaaaacaaatcaggatagaatagaaaaattgtttattttatcctatctctttgatg 327  Q
    ||||   || |||| |||| |||| ||||| ||||||||||||||||| ||||||||    
T  7883842 caaaggaaattcagaataggataggaaaatggtttattttatcctatccctttgatg 7883898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 5868351 - 5868391
Alignment:
Q  284 ggatagaatagaaaaattgtttattttatcctatctctttg 324  Q
    |||||| |||| ||||| |||||||||||||||||||||||    
T  5868351 ggataggataggaaaatggtttattttatcctatctctttg 5868391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 21091062 - 21091126
Alignment:
Q  12 acatgataaacgttaatcatatcatatgttagatacacacatgataacaaagatgatataattat 76  Q
    ||||||||||| |||||| |||||| |||| ||| | |||||||||||||| | ||||| |||||    
T  21091062 acatgataaaccttaatcctatcatgtgtttgatgcgcacatgataacaaacaagatatcattat 21091126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 31078231 - 31078167
Alignment:
Q  12 acatgataaacgttaatcatatcatatgttagatacacacatgataacaaagatgatataattat 76  Q
    ||||||||||| |||||  |||||| |||| ||| | |||||||||||||| ||||||| |||||    
T  31078231 acatgataaacattaattctatcatgtgtttgatgcgcacatgataacaaacatgatatcattat 31078167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 33007808 - 33007860
Alignment:
Q  24 ttaatcatatcatatgttagatacacacatgataacaaagatgatataattat 76  Q
    ||||||||||||| |||| ||| |||||||||||||||| | ||||| |||||    
T  33007808 ttaatcatatcatgtgtttgatgcacacatgataacaaacaagatatcattat 33007860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 232 - 324
Target Start/End: Complemental strand, 33134219 - 33134128
Alignment:
Q  232 ataatttataacacagcctatactcacatataaaaattacaaaaacaaatcaggatagaatagaaaaattgtttattttatcctatctctttg 324  Q
    ||||||| ||||  ||||||||||||   ||| ||||||||||   || ||||||||| |||| ||||| ||||||||||||||||| |||||    
T  33134219 ataatttctaacctagcctatactcatg-atagaaattacaaaggaaagtcaggataggataggaaaatggtttattttatcctatccctttg 33134128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 7e-32; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 43462772 - 43462978
Alignment:
Q  12 acatgataaacgttaatcatatcatatgtta--gatacacacatgataacaaagatgatataattattatattataattaaatgagaannnnnnnctcat 109  Q
    ||||||||||| |||||| |||||||||||   ||| |||||||||||||| | |  |||| |||||| |||||||||||||||||||       ||| |    
T  43462772 acatgataaacattaatcgtatcatatgtttttgatgcacacatgataacacatagtatatcattattttattataattaaatgagaaatttactctcgt 43462871  T
Q  110 cattaattaaatattttaaaaacggcatgtaattaatcataaataagtaaggaatgacaacattttaaaaacggaagaatatcatagtaataaataagga 209  Q
     ||||||||||||||||||||| | |||||||||||| |||||||||||||||| || | | |||||||||||| |||| ||||   | |||||||||||    
T  43462872 aattaattaaatattttaaaaatgacatgtaattaattataaataagtaaggaaagaaacctttttaaaaacggcagaacatcacgttgataaataagga 43462971  T
Q  210 atgaatt 216  Q
    || ||||    
T  43462972 ataaatt 43462978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 73 - 229
Target Start/End: Complemental strand, 46663498 - 46663338
Alignment:
Q  73 ttattatattataattaaatgagaannnnnnnctcatcattaattaaatattttaaaaacggcatgtaattaat----cataaataagtaaggaatgaca 168  Q
    ||||| |||||||||||||||||||       ||| | ||||||||||||||||||||| | ||||||||||||     |||||||||||||||||||||    
T  46663498 ttattttattataattaaatgagaaaattattctcgtaattaattaaatattttaaaaatgacatgtaattaattataaataaataagtaaggaatgaca 46663399  T
Q  169 acattttaaaaacggaagaatatcatagtaataaataaggaatgaattcttaatcatgtca 229  Q
    | |||||||||| || |  ||||||| |||||||||| ||||||||||  |||||||||||    
T  46663398 atattttaaaaatggtattatatcatggtaataaatatggaatgaatttataatcatgtca 46663338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 161 - 312
Target Start/End: Original strand, 21153348 - 21153498
Alignment:
Q  161 gaatgacaacattttaaaaacggaagaatatcatagtaataaataaggaatgaattcttaatcatg-tcaaaataatttataacacagcctatactcaca 259  Q
    |||||||||||||| |||||||  |||||||||| |||||||| |||||||||||| ||||| ||| |||| ||||||| |||| |||||||||||||      
T  21153348 gaatgacaacattt-aaaaacgacagaatatcattgtaataaacaaggaatgaatttttaattatgatcaagataatttctaactcagcctatactca-g 21153445  T
Q  260 tataaaaattacaaaaacaaatcaggatagaatagaaaaattgtttattttat 312  Q
     |||||| |||| ||| ||| ||||||||  |||||||||| || ||||||||    
T  21153446 gataaaagttacgaaagcaagtcaggatatgatagaaaaatggtctattttat 21153498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 41864791 - 41864919
Alignment:
Q  14 atgataaacgttaatcatatcatatgttagatacacacatgataacaaagatgatataattattatattataattaaatgagaannnnnnnctcatcatt 113  Q
    ||||||||| |||||| |||||| | || ||| |||||||||||||||| | || || |||||| || ||||||||||||||||       ||| |||||    
T  41864791 atgataaacattaatcttatcatgtatttgatgcacacatgataacaaataagaaatcattattttactataattaaatgagaa--atttactc-tcatt 41864887  T
Q  114 aattaaatattttaaaaacggcatgtaattaa 145  Q
     |||||||||||||||||| ||||||||||||    
T  41864888 tattaaatattttaaaaacagcatgtaattaa 41864919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 443 - 496
Target Start/End: Original strand, 51522864 - 51522917
Alignment:
Q  443 gacaagattttggtagagaatttatcattagatccagtagagtttcattgtgtg 496  Q
    ||||| ||||||||||| |||||||||||||||||| |||||||||||||||||    
T  51522864 gacaaaattttggtagataatttatcattagatccaatagagtttcattgtgtg 51522917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 40700825 - 40700889
Alignment:
Q  12 acatgataaacgttaatcatatcatatgttagatacacacatgataacaaagatgatataattat 76  Q
    ||||||||||| |||||| |||||| |||| ||| |||||||||||||||| ||||||| |||||    
T  40700825 acatgataaacattaatcctatcatgtgtttgatgcacacatgataacaaacatgatatcattat 40700889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 28457582 - 28457646
Alignment:
Q  12 acatgataaacgttaatcatatcatatgttagatacacacatgataacaaagatgatataattat 76  Q
    ||||||||||| | |||| ||||||||||| ||| | |||||||||||||| | ||||| |||||    
T  28457582 acatgataaacatcaatcctatcatatgtttgatgcgcacatgataacaaataagatatcattat 28457646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 44762451 - 44762512
Alignment:
Q  31 tatcatatgttagatacacacatgataacaaagatgatataattattatattataattaaatga 94  Q
    ||||||||||| ||| |||||||||||||||| ||||||| ||   ||||||| ||||||||||    
T  44762451 tatcatatgtttgatgcacacatgataacaaacatgatattat--atatattacaattaaatga 44762512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 32 - 169
Target Start/End: Complemental strand, 3320061 - 3319924
Alignment:
Q  32 atcatatgttagatacacacatgataacaaagatgatataattattatattataattaaatgagaannnnnnnctcatcattaattaaatattttaaaaa 131  Q
    |||||||||| ||  | |||||||||||||| ||||||| |||||| || ||||| |||||||| |       ||| | ||||||||||||||| |||||    
T  3320061 atcatatgtttgaggcgcacatgataacaaatatgatatcattattttactataaataaatgagtaaattacactcgtaattaattaaatatttaaaaaa 3319962  T
Q  132 cggcatgtaattaatcataaataagtaaggaatgacaa 169  Q
     | |||||||||||| | ||||||||||||||||||||    
T  3319961 agacatgtaattaattagaaataagtaaggaatgacaa 3319924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 318
Target Start/End: Original strand, 34513713 - 34513868
Alignment:
Q  162 aatgacaacattttaaaaacggaagaatatcatagtaataaataaggaatgaattcttaatcatgtcaaaataatttataacacagcctatactcacata 261  Q
    |||||||| |||||||||| || |||||||||   ||||||||||| ||||| ||  |||||   |||  ||||||| |||| |||| ||||||||   |    
T  34513713 aatgacaatattttaaaaatggcagaatatcaagataataaataagaaatgattttctaatcccatcaggataatttctaacccagcttatactcagg-a 34513811  T
Q  262 taaaaattacaaaaacaaatcaggatagaatagaaaaattgtttattttatcctatc 318  Q
    || ||||||||||   || ||||||||  |||||||||| |||||||||||||||||    
T  34513812 tagaaattacaaaggaaagtcaggatatgatagaaaaatggtttattttatcctatc 34513868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 37910463 - 37910527
Alignment:
Q  12 acatgataaacgttaatcatatcatatgttagatacacacatgataacaaagatgatataattat 76  Q
    ||||||||||| ||||||||||||| |||| ||| |||||||||||||||| | ||||| |||||    
T  37910463 acatgataaacattaatcatatcatgtgtttgatgcacacatgataacaaacaggatatcattat 37910527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 3319907 - 3319849
Alignment:
Q  158 aaggaatgacaacattttaaaaacggaagaatatcatagtaataaataaggaatgaatt 216  Q
    |||||||||||||||||||||||||  ||||||||||  | | ||||||||||||||||    
T  3319907 aaggaatgacaacattttaaaaacgacagaatatcatgattaaaaataaggaatgaatt 3319849  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 45498973 - 45499023
Alignment:
Q  12 acatgataaacgttaatcatatcatatgttagatacacacatgataacaaa 62  Q
    ||||||||||| ||||||||||||| |||| ||| ||||||||||||||||    
T  45498973 acatgataaacattaatcatatcatgtgtttgatgcacacatgataacaaa 45499023  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 11138801 - 11138740
Alignment:
Q  162 aatgacaacattttaaaaacggaagaatatcatagtaataaataaggaatgaattcttaatc 223  Q
    ||||||||||||||||||| | |||||||||||  ||||||| ||| |||||||| ||||||    
T  11138801 aatgacaacattttaaaaatgaaagaatatcatgataataaacaagaaatgaattgttaatc 11138740  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 17702330 - 17702285
Alignment:
Q  162 aatgacaacattttaaaaacggaagaatatcatagtaataaataag 207  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||    
T  17702330 aatgacaacattttaaaaatggaagaatatcatgataataaataag 17702285  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 54103163 - 54103207
Alignment:
Q  139 taattaatcataaataagtaaggaatgacaacattttaaaaacgg 183  Q
    |||||||| | |||||||||||||| |||||||||||||||||||    
T  54103163 taattaattaaaaataagtaaggaaggacaacattttaaaaacgg 54103207  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 313
Target Start/End: Original strand, 5787260 - 5787410
Alignment:
Q  162 aatgacaacattttaaaaacggaagaatatcatagtaataaataaggaatgaattcttaatcatgtcaaaataatttataacacagcctatactcacata 261  Q
    |||||||| |||||||||| || |||||||||   |||||||||||||||||  | ||||||   |||  ||||||| |||| |||| |||||||  | |    
T  5787260 aatgacaatattttaaaaatggcagaatatcaagataataaataaggaatgatcttttaatcccatcaggataatttctaactcagcatatactc-gaca 5787358  T
Q  262 taaaaattacaaaaacaaatcaggatagaatagaaaaattgtttattttatc 313  Q
    || ||||||||||   |||||| ||||| |||| |||||  |||||||||||    
T  5787359 tagaaattacaaaggaaaatcatgataggataggaaaatgatttattttatc 5787410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 34514204 - 34514142
Alignment:
Q  14 atgataaacgttaatcatatcatatgttagatacacacatgataacaaagatgatataattat 76  Q
    ||||||||| |||||||| ||||||||| ||| | |||||||||||||| | ||||| |||||    
T  34514204 atgataaacattaatcatgtcatatgtttgatgcgcacatgataacaaataggatatcattat 34514142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 36198615 - 36198679
Alignment:
Q  12 acatgataaacgttaatcatatcatatgttagatacacacatgataacaaagatgatataattat 76  Q
    ||||||||||| |||||| |||||| |||| |||   |||||||||||||| ||||||| |||||    
T  36198615 acatgataaacattaatcttatcatgtgtttgatgtgcacatgataacaaatatgatatcattat 36198679  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 44289426 - 44289490
Alignment:
Q  12 acatgataaacgttaatcatatcatatgttagatacacacatgataacaaagatgatataattat 76  Q
    ||||||||||| |||||| | |||| |||| ||| | |||||||||||||| ||||||| |||||    
T  44289426 acatgataaacattaatcttctcatgtgtttgatgcgcacatgataacaaacatgatatcattat 44289490  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 32329702 - 32329639
Alignment:
Q  12 acatgataaacgttaatcatatcatatgttagatacacacatgataacaaagatgatataatta 75  Q
    ||||||||||| ||||||||||||| |||| ||||| |||||||||||||| ||||||| ||||    
T  32329702 acatgataaacattaatcatatcatgtgtttgatacgcacatgataacaaatatgatatcatta 32329639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 12255475 - 12255411
Alignment:
Q  12 acatgataaacgttaatcatatcatatgttagatacacacatgataacaaagatgatataattat 76  Q
    ||||||||||| |||||| |||||| |||| ||| | |||||||||||||| ||||||| |||||    
T  12255475 acatgataaacattaatcttatcatgtgtttgatgcgcacatgataacaaacatgatatcattat 12255411  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 12267675 - 12267591
Alignment:
Q  12 acatgataaacgttaatcatatcatatgttagatacacacatgataacaaagatgatataattattatattataattaaatgagaa 97  Q
    ||||||||| | ||||||||||||| |||| ||| | ||||||||||| || |  |||| |||||| |||||||| ||||||||||    
T  12267675 acatgataatcattaatcatatcatgtgtt-gatgcccacatgataactaatagtatatcattattttattataaataaatgagaa 12267591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 9315170 - 9315106
Alignment:
Q  12 acatgataaacgttaatcatatcatatgttagatacacacatgataacaaagatgatataattat 76  Q
    ||||||||||| |||||| |||||| |||| ||| | |||||||||||||| | ||||| |||||    
T  9315170 acatgataaacattaatcctatcatgtgtttgatgcgcacatgataacaaacaagatatcattat 9315106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 12603952 - 12604023
Alignment:
Q  111 attaattaaatattttaaaaacggcatgtaattaatcataaataagtaaggaatgacaacattttaaaaacg 182  Q
    |||||||||||||||||||||| ||| | | |||||   |||||| ||||||||||||||||||||||||||    
T  12603952 attaattaaatattttaaaaaccgcacgcatttaatttaaaataaataaggaatgacaacattttaaaaacg 12604023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 13996112 - 13996163
Alignment:
Q  162 aatgacaacattttaaaaacggaagaatatcatagtaataaataaggaatga 213  Q
    |||||||| ||||| |||| |||||||||||| | |||||||||||||||||    
T  13996112 aatgacaatatttttaaaatggaagaatatcaaaataataaataaggaatga 13996163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 13995538 - 13995602
Alignment:
Q  12 acatgataaacgttaatcatatcatatgttagatacacacatgataacaaagatgatataattat 76  Q
    ||||||||||| |||||| |||||| |||| ||| | |||||||||| ||| ||||||| |||||    
T  13995538 acatgataaacattaatcctatcatgtgtttgatgcgcacatgataagaaacatgatatcattat 13995602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 27338824 - 27338768
Alignment:
Q  262 taaaaattacaaaaacaaatcaggatagaatagaaaaattgtttattttatcctatc 318  Q
    |||||||||||||   || ||||||||| |||||||||| |||||||||||| ||||    
T  27338824 taaaaattacaaaggaaagtcaggataggatagaaaaatggtttattttatcatatc 27338768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 3922 - 3987
Alignment:
Q  151 aataagtaaggaatgacaacattttaaaaacggaagaatatcatagtaataaataaggaatgaatt 216  Q
    ||||||||| ||||||||| ||||||||||||  | |||||||| |||||||| ||||||||||||    
T  3922 aataagtaatgaatgacaatattttaaaaacgatataatatcatggtaataaagaaggaatgaatt 3987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 4180 - 4115
Alignment:
Q  151 aataagtaaggaatgacaacattttaaaaacggaagaatatcatagtaataaataaggaatgaatt 216  Q
    ||||||||| ||||||||| ||||||||||||  | |||||||| |||||||| ||||||||||||    
T  4180 aataagtaatgaatgacaatattttaaaaacgatataatatcatggtaataaagaaggaatgaatt 4115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0957 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 1587 - 1646
Alignment:
Q  150 aaataagtaaggaatgacaacattttaaaaacggaagaatatcatagtaataaataagga 209  Q
    ||||||||| | |||||||||||||||||||||||||||||  || |||| |||||||||    
T  1587 aaataagtatgaaatgacaacattttaaaaacggaagaatactatggtaaaaaataagga 1646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0957; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 324
Target Start/End: Complemental strand, 1760 - 1697
Alignment:
Q  261 ataaaaattacaaaaacaaatcaggatagaatagaaaaattgtttattttatcctatctctttg 324  Q
    ||||||||||||||| ||| | ||||||  ||||||||||  ||||||| ||||||||||||||    
T  1760 ataaaaattacaaaaccaagttaggataagatagaaaaatgatttatttcatcctatctctttg 1697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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