View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14556_low_21 (Length: 235)
Name: NF14556_low_21
Description: NF14556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14556_low_21 |
 | |
|
| [»] chr6 (30 HSPs) |
| |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] scaffold0477 (1 HSPs) |
| |
|
| [»] scaffold0288 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 30)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 235
Target Start/End: Original strand, 4579357 - 4579577
Alignment:
| Q |
15 |
cataggtagacataaaatgcaaattatttggtccgaacaaaactataaaaattgtacaaaagtcacttaagtttgattttgtttgagcaacacctcctta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
4579357 |
cataggtagacataaaatgcaaattatttggtccgaacaaaactataaaaatcgtacaaaagtcacttaagttcgattttgtttgagtaacacctcctta |
4579456 |
T |
|
| Q |
115 |
atcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgccttttgcctcatcttctttgctt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4579457 |
atcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgccttttgcctcatcttctttgctt |
4579556 |
T |
|
| Q |
215 |
tctctcccaccatcaattcat |
235 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4579557 |
tctctcccaccatcaattcat |
4579577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 15 - 235
Target Start/End: Original strand, 4574233 - 4574453
Alignment:
| Q |
15 |
cataggtagacataaaatgcaaattatttggtccgaacaaaactataaaaattgtacaaaagtcacttaagtttgattttgtttgagcaacacctcctta |
114 |
Q |
| |
|
|||||| |||| |||||| ||||||||| ||| |||||||||||| | |||||| |||||| ||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
4574233 |
cataggaagacctaaaatatgaattatttgttcctaacaaaactatatatattgtataaaagtgacttaagcttgattttgtttaagcaacacctcctta |
4574332 |
T |
|
| Q |
115 |
atcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgccttttgcctcatcttctttgctt |
214 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||| |||||| || |||||||||||||||||| ||| |
|
|
| T |
4574333 |
atcactttctccaagtttgtgtatgaacaacctccaggtctcgtgtccacctccaccttcttcttcagctcaatggctttttgcctcatcttctttcctt |
4574432 |
T |
|
| Q |
215 |
tctctcccaccatcaattcat |
235 |
Q |
| |
|
| ||||| ||||||||||| |
|
|
| T |
4574433 |
tatctccggacatcaattcat |
4574453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 22 - 220
Target Start/End: Original strand, 4560438 - 4560636
Alignment:
| Q |
22 |
agacataaaatgcaaattatttggtccgaacaaaactataaaaattgtacaaaagtcacttaagtttgattttgtttgagcaacacctccttaatcactt |
121 |
Q |
| |
|
|||| |||||| ||||| ||||| ||| |||||||||||| | |||||| |||||| ||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4560438 |
agacctaaaatacaaatgatttgttcctaacaaaactatatatattgtataaaagtaacttatgtttgattttgtttaagcaacacctccttaatcactt |
4560537 |
T |
|
| Q |
122 |
tctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgccttttgcctcatcttctttgctttctctc |
220 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| | ||||| |||| ||||||| ||| || ||||||||||||||||||||| |||| |||| |
|
|
| T |
4560538 |
tctccaagttcatgtatgaacaacctccaggtctcgtgtacacctccgcctttttcttcagctccatggccttttgcctcatcttctttcctttatctc |
4560636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 85 - 235
Target Start/End: Original strand, 4585631 - 4585781
Alignment:
| Q |
85 |
gtttgattttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaact |
184 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4585631 |
gtttgattttatttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtcctcctccgccttcttcttcaact |
4585730 |
T |
|
| Q |
185 |
caattgccttttgcctcatcttctttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
| |||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
4585731 |
cgattgccttttgcctcatcttctttccattctctcccaccatcaattcat |
4585781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 81 - 235
Target Start/End: Complemental strand, 4613859 - 4613705
Alignment:
| Q |
81 |
ttaagtttgattttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttc |
180 |
Q |
| |
|
|||||||||||||||||| |||| |||||| || |||||||| ||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
4613859 |
ttaagtttgattttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttcttc |
4613760 |
T |
|
| Q |
181 |
aactcaattgccttttgcctcatcttctttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
4613759 |
aactcaattgccttttgcctcattttctttcctttctctcccaccatcaattcat |
4613705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 79 - 235
Target Start/End: Original strand, 4592220 - 4592376
Alignment:
| Q |
79 |
acttaagtttgattttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttct |
178 |
Q |
| |
|
|||||| ||||||||| ||| |||||||||||||| |||| ||| ||||||||||| |||||||| |||||||||||||||| |||||| ||||||||| |
|
|
| T |
4592220 |
acttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttcttct |
4592319 |
T |
|
| Q |
179 |
tcaactcaattgccttttgcctcatcttctttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4592320 |
tcaactcgattgcctttttcctcatcttctttcctttctctcccaccatcaattcat |
4592376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 35 - 233
Target Start/End: Original strand, 4598116 - 4598314
Alignment:
| Q |
35 |
aaattatttggtccgaacaaaactataaaaattgtacaaaagtcacttaagtttgattttgtttgagcaacacctccttaatcactttctccaagttcat |
134 |
Q |
| |
|
|||||||||| ||| || ||||||||||| ||| || ||||| | |||||||||||| ||||| || ||||||||||||||||||||||| |||||||| |
|
|
| T |
4598116 |
aaattatttgatcctaataaaactataaatattttattaaagttaattaagtttgattctgtttaagaaacacctccttaatcactttctctaagttcat |
4598215 |
T |
|
| Q |
135 |
gtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgccttttgcctcatcttctttgctttctctcccaccatcaattc |
233 |
Q |
| |
|
||||||||| |||||| ||||||| ||||||||| ||||| ||||||| ||||||| |||||||||||| |||||| |||| |||||| ||||||||| |
|
|
| T |
4598216 |
gtatgaacaacctccaagtctcgtttcctcctccgccttcatcttcaaatcaattgtcttttgcctcattttctttcctttatctcccgacatcaattc |
4598314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 72 - 235
Target Start/End: Original strand, 4557107 - 4557270
Alignment:
| Q |
72 |
aaaagtcacttaagtttgattttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccacc |
171 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||| || |
|
|
| T |
4557107 |
aaaagtcacttaggtttgattttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgcc |
4557206 |
T |
|
| Q |
172 |
ttcttcttcaactcaattgccttttgcctcatcttctttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
||| |||||| ||||||| ||||| || |||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
4557207 |
ttcgtcttcatctcaattatctttttccacatcttctttcctttctccccctccatcaattcat |
4557270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 87 - 235
Target Start/End: Original strand, 4563708 - 4563856
Alignment:
| Q |
87 |
ttgattttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactca |
186 |
Q |
| |
|
|||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||| ||||||| |||||||| |||||||| ||||||||||||||| |
|
|
| T |
4563708 |
ttgattttgtttaagcaaaacctccttgatcactttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctccactttcttcttcaactca |
4563807 |
T |
|
| Q |
187 |
attgccttttgcctcatcttctttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||| ||||||||||| |
|
|
| T |
4563808 |
attgccttttgccgcatcttctttcctttctctcctgacatcaattcat |
4563856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 76 - 235
Target Start/End: Original strand, 4570958 - 4571117
Alignment:
| Q |
76 |
gtcacttaagtttgattttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttct |
175 |
Q |
| |
|
|||||||| || ||||||| ||| ||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| |||||| |
|
|
| T |
4570958 |
gtcacttaggtgtgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttct |
4571057 |
T |
|
| Q |
176 |
tcttcaactcaattgccttttgcctcatcttctttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
|||||| ||| ||| |||| ||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
4571058 |
tcttcatctccattatatttttcctcatcttctttcctttatctcccaccatcaattcat |
4571117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 90 - 235
Target Start/End: Original strand, 4480693 - 4480838
Alignment:
| Q |
90 |
attttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaatt |
189 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| || |||||||| ||||||||||| || ||||||||||||| || |
|
|
| T |
4480693 |
attttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttcttcaactccatg |
4480792 |
T |
|
| Q |
190 |
gccttttgcctcatcttctttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
4480793 |
gccttttgcttcatcttctttcctttctctcccaccaacaattcat |
4480838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 100 - 235
Target Start/End: Complemental strand, 4504519 - 4504384
Alignment:
| Q |
100 |
agcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgccttttgcc |
199 |
Q |
| |
|
||||| || |||||||||||||| |||||||||||||||||||| || ||| |||| ||||||||||| |||||||||||||||| || |||||||||| |
|
|
| T |
4504519 |
agcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttcttcaactccatggccttttgcc |
4504420 |
T |
|
| Q |
200 |
tcatcttctttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4504419 |
tcatcttctttcctttctctcccaccatcaattcat |
4504384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 90 - 235
Target Start/End: Original strand, 4516321 - 4516466
Alignment:
| Q |
90 |
attttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaatt |
189 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||| |||||||| || || ||||| ||||||||||| ||||||||||||| || || |
|
|
| T |
4516321 |
attttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgccttcttcttcaattccatg |
4516420 |
T |
|
| Q |
190 |
gccttttgcctcatcttctttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||| ||||||| |
|
|
| T |
4516421 |
gccttttgcctcatcttctttcctttatctcccaccattaattcat |
4516466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 93 - 233
Target Start/End: Original strand, 3171744 - 3171884
Alignment:
| Q |
93 |
ttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgcc |
192 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| |||||||||||||||||||| || ||| ||| || |||||||| |||||||||||||||| || ||| |
|
|
| T |
3171744 |
ttgtttaagcaagacctccttaatcactttatccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttcttcttcaactccatggcc |
3171843 |
T |
|
| Q |
193 |
ttttgcctcatcttctttgctttctctcccaccatcaattc |
233 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3171844 |
ctttgcctcatcttctttcctttctctcccaccatcaattc |
3171884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 109 - 235
Target Start/End: Complemental strand, 4490468 - 4490342
Alignment:
| Q |
109 |
tccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgccttttgcctcatcttct |
208 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| || || |||||||||||||| | |||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
4490468 |
tccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgtcctccgctgccttcttcttcaactccgtcgccttttgcctcatcttct |
4490369 |
T |
|
| Q |
209 |
ttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
|| |||||||||||||||||||||||| |
|
|
| T |
4490368 |
ttcctttctctcccaccatcaattcat |
4490342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 90 - 235
Target Start/End: Complemental strand, 4515253 - 4515108
Alignment:
| Q |
90 |
attttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaatt |
189 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| |||||||||| ||||||| | || ||| |||| |||||||| || ||||||| |||||||| || |
|
|
| T |
4515253 |
attttgtttaagcaacacctccttgatcactttgtccaagttcaagtatgaagacccgccaagtctagtgtcctcgtctgccttctttttcaactccata |
4515154 |
T |
|
| Q |
190 |
gccttttgcctcatcttctttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
|||||| |||||| || ||| |||||||||||||||||||||||| |
|
|
| T |
4515153 |
acctttttcctcattttatttcctttctctcccaccatcaattcat |
4515108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 90 - 233
Target Start/End: Original strand, 4461123 - 4461266
Alignment:
| Q |
90 |
attttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaatt |
189 |
Q |
| |
|
||||||||| ||||| || |||||||| ||||| ||||||||| |||||||| ||||||||||| || |||||||||||||||||||| || || || |
|
|
| T |
4461123 |
attttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaattccatg |
4461222 |
T |
|
| Q |
190 |
gccttttgcctcatcttctttgctttctctcccaccatcaattc |
233 |
Q |
| |
|
|||||||||||||||||||| | ||||||| ||||||||||| |
|
|
| T |
4461223 |
accttttgcctcatcttctttccaatctctccaaccatcaattc |
4461266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 235
Target Start/End: Original strand, 4469813 - 4469948
Alignment:
| Q |
100 |
agcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgccttttgcc |
199 |
Q |
| |
|
||||| || |||||||| ||||| ||||||||| |||||||| ||||||||||| || |||||||||||||||||||| ||||| || ||||| || |
|
|
| T |
4469813 |
agcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaactccatgatcttttccc |
4469912 |
T |
|
| Q |
200 |
tcatcttctttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
||||||||||| | |||||||| ||||||||||||| |
|
|
| T |
4469913 |
tcatcttctttccattctctccaaccatcaattcat |
4469948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 4617022 - 4617153
Alignment:
| Q |
90 |
attttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaatt |
189 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||| | |||||||||||||||||| || || ||||| |||| |||||| |||||||||||||||| || |
|
|
| T |
4617022 |
attttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatg |
4617121 |
T |
|
| Q |
190 |
gccttttgcctcatcttctttgctttctctcc |
221 |
Q |
| |
|
||||||||| |||| |||||| |||| ||||| |
|
|
| T |
4617122 |
gccttttgcttcattttctttcctttatctcc |
4617153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 4505857 - 4505994
Alignment:
| Q |
90 |
attttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaatt |
189 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| |||||||||||| ||||||| || |||||||| || ||||||| || |||| |||||||| || |
|
|
| T |
4505857 |
attttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggtcttgtatcctcctttgccctctttttcaactccatg |
4505956 |
T |
|
| Q |
190 |
gccttttgcctcatcttctttgctttctctcccaccat |
227 |
Q |
| |
|
|||||| ||||||||| ||| |||||||||| ||||| |
|
|
| T |
4505957 |
acctttttcctcatcttgtttcctttctctccaaccat |
4505994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 4607041 - 4606945
Alignment:
| Q |
72 |
aaaagtcacttaagtttgattttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctcc |
168 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| |||| |||||||||||| |||||||||||||||||| | || || |||||| ||||| ||||| |
|
|
| T |
4607041 |
aaaagtcacttaggtttgattttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaaaaaccacctggtctcttgtccccctcc |
4606945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 109 - 235
Target Start/End: Original strand, 4568072 - 4568201
Alignment:
| Q |
109 |
tccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcct---ccaccttcttcttcaactcaattgccttttgcctcatct |
205 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| | | |||||||| ||||||| || || ||||||||||||||| | |||||||||||||||| |
|
|
| T |
4568072 |
tccttaatcactttgtccaagttcatgtatgaagaatcaccaggtcttgtgtccttctctgccttcttcttcttcaactccacggccttttgcctcatct |
4568171 |
T |
|
| Q |
206 |
tctttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
| ||| |||||| ||||||||| ||||||| |
|
|
| T |
4568172 |
tttttcctttctgtcccaccattaattcat |
4568201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 235
Target Start/End: Complemental strand, 4267295 - 4267153
Alignment:
| Q |
93 |
ttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgcc |
192 |
Q |
| |
|
|||||| |||| ||||||||||| ||||| |||||||||||||||||| | || |||||||| |||| ||| || ||||| |||||||||| | | |
|
|
| T |
4267295 |
ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttcctcttcaactccaagaca |
4267196 |
T |
|
| Q |
193 |
ttttgcctcatcttctttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
|||||| ||||| | ||| |||||||||||||||||||||||| |
|
|
| T |
4267195 |
ttttgcttcatcatatttcctttctctcccaccatcaattcat |
4267153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 90 - 227
Target Start/End: Original strand, 4492955 - 4493092
Alignment:
| Q |
90 |
attttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaatt |
189 |
Q |
| |
|
||||||||| ||||| || ||||| |||||||| |||||||||||||||||||| || |||||| ||||||||||| ||||||| |||||||| | |
|
|
| T |
4492955 |
attttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggtactgtgtcctcctctgccttctttttcaactccgtg |
4493054 |
T |
|
| Q |
190 |
gccttttgcctcatcttctttgctttctctcccaccat |
227 |
Q |
| |
|
|| ||| ||||||||| ||| |||||||||| ||||| |
|
|
| T |
4493055 |
gcttttctcctcatcttgtttcctttctctccaaccat |
4493092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 209
Target Start/End: Original strand, 4601789 - 4601908
Alignment:
| Q |
90 |
attttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaatt |
189 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||| |||| |||| |||||||||| || || |||| ||| ||||| || ||||||||||||| || |
|
|
| T |
4601789 |
attttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccacctagtctagtgctctcctttgccatcttcttcaactccatg |
4601888 |
T |
|
| Q |
190 |
gccttttgcctcatcttctt |
209 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4601889 |
gccttttgcctcatcttctt |
4601908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 4392154 - 4392052
Alignment:
| Q |
94 |
tgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgcct |
193 |
Q |
| |
|
||||| ||||| ||||||||||||| ||| |||||||||||| ||||| | || ||||||| |||||||||| |||||||||||||||| || |||| |
|
|
| T |
4392154 |
tgtttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtcatgtgtcctcctttgccttcttcttcaactcgatcgcct |
4392055 |
T |
|
| Q |
194 |
ttt |
196 |
Q |
| |
|
||| |
|
|
| T |
4392054 |
ttt |
4392052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 235
Target Start/End: Original strand, 4622145 - 4622287
Alignment:
| Q |
93 |
ttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgcc |
192 |
Q |
| |
|
|||||| |||| ||||||||||| ||||| |||||||| |||||||||| || ||||| || || ||| || |||||| ||||||||| || ||| |
|
|
| T |
4622145 |
ttgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggcc |
4622244 |
T |
|
| Q |
193 |
ttttgcctcatcttctttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
||||| |||||||||||| |||| |||||| ||||||||||| |
|
|
| T |
4622245 |
ttttgtctcatcttctttcctttatctcccgacatcaattcat |
4622287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 4625954 - 4626092
Alignment:
| Q |
93 |
ttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgcc |
192 |
Q |
| |
|
|||||| ||||| || || ||||||| ||| |||| |||||||||||||| || || || || ||| |||||| |||||||||||||||| || ||| |
|
|
| T |
4625954 |
ttgtttaagcaagacatcattaatcagtttatccatattcatgtatgaacaaccaccgggactaatgttctcctctgccttcttcttcaactccatggcc |
4626053 |
T |
|
| Q |
193 |
ttttgcctcatcttctttgctttctctcccaccatcaat |
231 |
Q |
| |
|
|||||||||||||||||| | || ||||| |||||||| |
|
|
| T |
4626054 |
ttttgcctcatcttctttccgttatctcctgccatcaat |
4626092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 235
Target Start/End: Complemental strand, 4299869 - 4299733
Alignment:
| Q |
93 |
ttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgcc |
192 |
Q |
| |
|
|||||| |||| ||||||||||| ||||| |||||||||||||| ||||| || || || | |||| |||||| ||||| ||||| ||||| |
|
|
| T |
4299869 |
ttgtttaagcagaacctccttaataactttgtccaagttcatgtacgaacaaccacctggattagtgttctcctctgccttc------aactcccttgcc |
4299776 |
T |
|
| Q |
193 |
ttttgcctcatcttctttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
||||| |||||||| | | |||||||||||||||||||||||| |
|
|
| T |
4299775 |
ttttgtctcatcttatctcctttctctcccaccatcaattcat |
4299733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 4256663 - 4256599
Alignment:
| Q |
171 |
cttcttcttcaactcaattgccttttgcctcatcttctttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
|||||||||||| || || |||||||||||||||||||| |||| |||||| ||||||||||| |
|
|
| T |
4256663 |
cttcttcttcaattccatgaccttttgcctcatcttctttcctttttctcccgacatcaattcat |
4256599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 74 - 235
Target Start/End: Complemental strand, 20863991 - 20863830
Alignment:
| Q |
74 |
aagtcacttaagtttgattttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccacctt |
173 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||| | ||||| ||||||||||| |||| |
|
|
| T |
20863991 |
aagtcacttaagtttgattttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgcctt |
20863892 |
T |
|
| Q |
174 |
cttcttcaactcaattgccttttgcctcatcttctttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
||||||||||||| ||| ||||||||||||| || || |||||||||||||||||||||||| |
|
|
| T |
20863891 |
cttcttcaactcatttgtcttttgcctcatcctccttcctttctctcccaccatcaattcat |
20863830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 72 - 235
Target Start/End: Complemental strand, 16686417 - 16686254
Alignment:
| Q |
72 |
aaaagtcacttaagtttgattttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccacc |
171 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||| || |||||||||| ||| || |||||| |
|
|
| T |
16686417 |
aaaagtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtctcgggtcttcgtccacc |
16686318 |
T |
|
| Q |
172 |
ttcttcttcaactcaattgccttttgcctcatcttctttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
||| | | || |||||| ||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16686317 |
ttcatttgcagttcaattatctttttcctcatcttctttcctttctctcccaccatcaattcat |
16686254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 90 - 235
Target Start/End: Original strand, 1674226 - 1674371
Alignment:
| Q |
90 |
attttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaatt |
189 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| |||||||||||||||||||| || || ||||| |||| |||||| ||||||||||||| || || |
|
|
| T |
1674226 |
attttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaattccatg |
1674325 |
T |
|
| Q |
190 |
gccttttgcctcatcttctttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
||||||||||||||||| ||| | |||||||||||||||||||||| |
|
|
| T |
1674326 |
gccttttgcctcatcttttttccattctctcccaccatcaattcat |
1674371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 90 - 235
Target Start/End: Complemental strand, 28000231 - 28000086
Alignment:
| Q |
90 |
attttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaatt |
189 |
Q |
| |
|
||||||||| | |||||| |||||||||||||| |||||||||||||||||||| || || ||||| |||| |||||| |||| ||||||||||| || |
|
|
| T |
28000231 |
attttgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctttttcttcaactccatg |
28000132 |
T |
|
| Q |
190 |
gccttttgcctcatcttctttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
||||||||||||||||| ||| | |||||||||||||||||||||| |
|
|
| T |
28000131 |
gccttttgcctcatcttttttccattctctcccaccatcaattcat |
28000086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 235
Target Start/End: Original strand, 24103002 - 24103144
Alignment:
| Q |
93 |
ttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgcc |
192 |
Q |
| |
|
|||||| |||| ||||||||||| ||||| |||||||||||||||||| | || |||| ||| |||| ||| || |||||||||| ||||| | || |
|
|
| T |
24103002 |
ttgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttctgccttcttcttgaactccaagacc |
24103101 |
T |
|
| Q |
193 |
ttttgcctcatcttctttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
|||||| ||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
24103102 |
ttttgcttcatcgtctttccgttctctcccaccatcaattcat |
24103144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 93 - 235
Target Start/End: Complemental strand, 4815 - 4673
Alignment:
| Q |
93 |
ttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgcc |
192 |
Q |
| |
|
|||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |||| || |||| |||||| |||||||||||||||| || ||| |
|
|
| T |
4815 |
ttgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccaccagaactggtgttctcctctgccttcttcttcaactccatggcc |
4716 |
T |
|
| Q |
193 |
ttttgcctcatcttctttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
||||||||||||||| || |||| |||||| ||||||||||| |
|
|
| T |
4715 |
ttttgcctcatcttcattcctttatctcccgacatcaattcat |
4673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 93 - 235
Target Start/End: Complemental strand, 3848 - 3706
Alignment:
| Q |
93 |
ttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgcc |
192 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||| |||| |||||||||||||| || || ||||| |||| |||||| |||||||||| ||||| | ||| |
|
|
| T |
3848 |
ttgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttctttaactccacggcc |
3749 |
T |
|
| Q |
193 |
ttttgcctcatcttctttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
3748 |
ttttgcctcatcttctttcctttctctcccaccgtcaattcat |
3706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 90 - 210
Target Start/End: Original strand, 1281114 - 1281234
Alignment:
| Q |
90 |
attttgtttgagcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaatt |
189 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| || ||||||||||||||||| || || ||||| |||| ||||||| || ||||||||| || || |
|
|
| T |
1281114 |
attttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctccgccgccttcttcaattccatg |
1281213 |
T |
|
| Q |
190 |
gccttttgcctcatcttcttt |
210 |
Q |
| |
|
||||||| ||||| |||||| |
|
|
| T |
1281214 |
gccttttctctcatattcttt |
1281234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 235
Target Start/End: Original strand, 3086430 - 3086565
Alignment:
| Q |
100 |
agcaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttcttcaactcaattgccttttgcc |
199 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||||||||||||||| || || || |||| ||| || | |||||||| ||||| | ||||||| |
|
|
| T |
3086430 |
agcaagacctccttaataactttgtccaagttcatgtatgaacaaccaccgatactggtgttctcttctgctttcttctttaactctgcgacattttgcc |
3086529 |
T |
|
| Q |
200 |
tcatcttctttgctttctctcccaccatcaattcat |
235 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
3086530 |
tcatcttctttcctttatctcccaccatcaattcat |
3086565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University