View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14556_low_22 (Length: 226)

Name: NF14556_low_22
Description: NF14556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14556_low_22
NF14556_low_22
[»] chr1 (12 HSPs)
chr1 (19-207)||(38731696-38731884)
chr1 (37-192)||(34644700-34644855)
chr1 (77-207)||(28040930-28041060)
chr1 (73-207)||(29169597-29169731)
chr1 (27-166)||(4861833-4861972)
chr1 (96-207)||(35387120-35387231)
chr1 (31-169)||(25375674-25375812)
chr1 (73-136)||(45659521-45659584)
chr1 (157-207)||(19035701-19035751)
chr1 (157-207)||(22347131-22347181)
chr1 (73-190)||(37932038-37932155)
chr1 (108-173)||(42920064-42920129)
[»] chr5 (14 HSPs)
chr5 (30-207)||(35310575-35310752)
chr5 (47-194)||(27336837-27336984)
chr5 (37-185)||(32269622-32269770)
chr5 (36-207)||(33691859-33692029)
chr5 (64-207)||(13166713-13166855)
chr5 (27-191)||(433416-433580)
chr5 (55-193)||(43129686-43129823)
chr5 (81-179)||(34335515-34335613)
chr5 (37-207)||(38446300-38446470)
chr5 (73-207)||(26212385-26212520)
chr5 (30-213)||(15291823-15292006)
chr5 (109-207)||(3113968-3114065)
chr5 (70-136)||(35456123-35456189)
chr5 (73-190)||(9841146-9841264)
[»] chr4 (16 HSPs)
chr4 (33-207)||(50000728-50000902)
chr4 (36-207)||(3330083-3330254)
chr4 (47-204)||(31847231-31847388)
chr4 (47-192)||(132531-132676)
chr4 (77-207)||(25706683-25706813)
chr4 (30-192)||(26521615-26521777)
chr4 (75-191)||(56461926-56462042)
chr4 (88-194)||(16957721-16957827)
chr4 (30-136)||(53619713-53619819)
chr4 (75-188)||(12053583-12053696)
chr4 (73-194)||(12918188-12918309)
chr4 (70-193)||(53170674-53170791)
chr4 (157-207)||(30940542-30940592)
chr4 (30-176)||(25504420-25504566)
chr4 (72-141)||(53098574-53098644)
chr4 (88-176)||(18534585-18534673)
[»] chr7 (10 HSPs)
chr7 (30-207)||(28517090-28517267)
chr7 (47-193)||(5825415-5825561)
chr7 (31-178)||(43857002-43857149)
chr7 (73-207)||(3676810-3676944)
chr7 (73-207)||(4501428-4501562)
chr7 (73-193)||(45613659-45613779)
chr7 (73-207)||(19277463-19277597)
chr7 (73-192)||(47679295-47679414)
chr7 (68-207)||(10905269-10905407)
chr7 (157-207)||(983203-983253)
[»] chr8 (8 HSPs)
chr8 (33-207)||(35739790-35739963)
chr8 (73-207)||(39434837-39434971)
chr8 (73-192)||(25021632-25021751)
chr8 (73-193)||(24125198-24125318)
chr8 (78-207)||(42921930-42922059)
chr8 (68-207)||(37517259-37517393)
chr8 (86-192)||(39671005-39671111)
chr8 (36-136)||(3188103-3188202)
[»] chr2 (14 HSPs)
chr2 (73-207)||(4412869-4413003)
chr2 (73-207)||(27502531-27502665)
chr2 (73-207)||(9685218-9685352)
chr2 (77-207)||(17344812-17344942)
chr2 (73-207)||(20142543-20142677)
chr2 (77-207)||(28225174-28225304)
chr2 (77-207)||(41867711-41867841)
chr2 (35-193)||(3825859-3826017)
chr2 (73-207)||(23484741-23484875)
chr2 (33-207)||(44686549-44686722)
chr2 (73-206)||(18744758-18744891)
chr2 (73-193)||(13146951-13147071)
chr2 (72-207)||(9675013-9675148)
chr2 (73-122)||(10579667-10579716)
[»] chr6 (11 HSPs)
chr6 (47-192)||(34304640-34304785)
chr6 (36-207)||(357520-357691)
chr6 (73-207)||(12401501-12401635)
chr6 (71-177)||(29337916-29338022)
chr6 (73-207)||(4206399-4206533)
chr6 (27-144)||(28543499-28543616)
chr6 (33-169)||(33220552-33220688)
chr6 (73-192)||(32115859-32115978)
chr6 (57-177)||(20693434-20693553)
chr6 (75-116)||(17249199-17249240)
chr6 (73-141)||(7200442-7200510)
[»] chr3 (10 HSPs)
chr3 (80-192)||(29861974-29862086)
chr3 (73-192)||(52741329-52741448)
chr3 (73-207)||(44198937-44199071)
chr3 (73-192)||(39583047-39583166)
chr3 (73-192)||(53785879-53785998)
chr3 (42-136)||(7900997-7901091)
chr3 (73-191)||(49018133-49018251)
chr3 (72-192)||(37992501-37992621)
chr3 (75-142)||(26393670-26393737)
chr3 (153-207)||(38146310-38146364)
[»] scaffold0186 (1 HSPs)
scaffold0186 (102-207)||(19920-20025)
[»] scaffold1768 (1 HSPs)
scaffold1768 (73-192)||(2-121)
[»] scaffold0148 (1 HSPs)
scaffold0148 (27-207)||(33373-33554)
[»] scaffold0110 (1 HSPs)
scaffold0110 (73-173)||(47376-47476)
[»] scaffold0224 (1 HSPs)
scaffold0224 (108-173)||(18202-18267)


Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 38731696 - 38731884
Alignment:
Q  19 ctttctcataaggttgtctgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctccta 118  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  38731696 ctttctcataaggttgtctgtcataccataaaagacccgacccctaaatcaacgagtggtgaaaccctagtcaaatccacatttgcatattttcctccta 38731795  T
Q  119 cccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtgggtcagtaaggaagttcacagggacctccttcttc 207  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38731796 cccatccgcacaccataatatctgcaagtttaactatcgatcttctatctagtgggtcagtaaggaagttcatagggacctccttcttc 38731884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 192
Target Start/End: Original strand, 34644700 - 34644855
Alignment:
Q  37 tgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataa 136  Q
    |||| |||| |||||| ||||||| ||||| | || |||||||||||||||||||| ||||||| ||||| |||||||||  ||||||   |||||||||    
T  34644700 tgtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcctccagcccatccatacaccataa 34644799  T
Q  137 tatctgcaagtttaactgtcgatcttctatctagtgggtcagtaaggaagttcaca 192  Q
     ||| |||    ||| ||||||||||||||||||||||||||| || |||||||||    
T  34644800 catccgcatacctaagtgtcgatcttctatctagtgggtcagtcagaaagttcaca 34644855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 77 - 207
Target Start/End: Complemental strand, 28041060 - 28040930
Alignment:
Q  77 gtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtgggtc 176  Q
    |||||||||||||||| || ||||  |||| |||||| |||||||||||| ||||||||| ||||||| |  | | ||| |||||||||||||||||||     
T  28041060 gtgaaaccccagtcaagtctacacaagcatgttttccacctacccatctgtacaccataacatctgcaggcctgagtgttgatcttctatctagtgggtt 28040961  T
Q  177 agtaaggaagttcacagggacctccttcttc 207  Q
    ||| |||||||||||||   |||||||||||    
T  28040960 agtcaggaagttcacagacgcctccttcttc 28040930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 73 - 207
Target Start/End: Complemental strand, 29169731 - 29169597
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    |||||||||||||||||||| || |||| ||||| ||||||||||||| ||| | ||||||||| ||| ||| |  | | ||| |||||||| ||||| |    
T  29169731 agtggtgaaaccccagtcaagtctacacatgcatgttttcctcctacctatccgtacaccataacatccgcaggcctgagtgttgatcttctttctagcg 29169632  T
Q  173 ggtcagtaaggaagttcacagggacctccttcttc 207  Q
    ||||||| ||||||||||||||  |||||||||||    
T  29169631 ggtcagtcaggaagttcacaggcgcctccttcttc 29169597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 166
Target Start/End: Complemental strand, 4861972 - 4861833
Alignment:
Q  27 taaggttgtctgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctg 126  Q
    ||||| |||||||| ||||||||| | |  |||| ||||  |||| ||||||||||| |||||||||||||||| ||||| |||| |||||||||||| |    
T  4861972 taaggctgtctgtcctaccataaatgtcaagacccctaatccaacaagtggtgaaacaccagtcaaatccacacatgcatgtttttctcctacccatccg 4861873  T
Q  127 cacaccataatatctgcaagtttaactgtcgatcttctat 166  Q
     ||||||||| ||||| | | | || ||||||||||||||    
T  4861872 tacaccataacatctgtaggctgaagtgtcgatcttctat 4861833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 207
Target Start/End: Complemental strand, 35387231 - 35387120
Alignment:
Q  96 cacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtgggtcagtaaggaagttcacaggg 195  Q
    ||||| ||||| ||| |||| ||| |||||| ||| ||||| ||||||| | |||||||| |||||||||| ||||| ||| || |||||||||||||||    
T  35387231 cacacatgcatgtttacctcttacacatctgtacatcataacatctgcatgcttaactgtagatcttctatttagtgagtctgtgaggaagttcacaggg 35387132  T
Q  196 acctccttcttc 207  Q
      ||||||||||    
T  35387131 gtctccttcttc 35387120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 169
Target Start/End: Complemental strand, 25375812 - 25375674
Alignment:
Q  31 gttgtctgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcaca 130  Q
    |||||||||| |||| ||||||  | |||| ||||  | |||||| |||||||||  ||||||||||| ||||||| ||||||| ||||||||| | | |    
T  25375812 gttgtctgtcctaccgtaaaagctctgacccctaatccgacgagtagtgaaaccctggtcaaatccacgcttgcatgttttccttctacccatccgtata 25375713  T
Q  131 ccataatatctgcaagtttaactgtcgatcttctatcta 169  Q
    |||||| |||||||    ||| |||| ||||||||||||    
T  25375712 ccataacatctgcagacctaagtgtcaatcttctatcta 25375674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 45659584 - 45659521
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataa 136  Q
    |||||||||||||||||||| || || | ||||| ||||||||||||||||||| |||| ||||    
T  45659584 agtggtgaaaccccagtcaagtctacgcatgcatgttttcctcctacccatctgtacactataa 45659521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 19035701 - 19035751
Alignment:
Q  157 gatcttctatctagtgggtcagtaaggaagttcacagggacctccttcttc 207  Q
    |||||| ||||||||||||| || |||||||||||||| ||||||||||||    
T  19035701 gatcttttatctagtgggtcggtcaggaagttcacaggcacctccttcttc 19035751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 22347131 - 22347181
Alignment:
Q  157 gatcttctatctagtgggtcagtaaggaagttcacagggacctccttcttc 207  Q
    ||||||||||||||||||||||| || |||||||||||  |||||||||||    
T  22347131 gatcttctatctagtgggtcagtcagaaagttcacaggtgcctccttcttc 22347181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 190
Target Start/End: Complemental strand, 37932155 - 37932038
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    |||||||||||| || |||| ||||| | ||||| ||||||||||  |||| || ||| ||||| ||| ||| |  ||| ||||||| ||||||||| ||    
T  37932155 agtggtgaaacctcaatcaagtccacgcatgcatgttttcctcctgtccatatgtacatcataacatccgcaggcctaagtgtcgattttctatctaatg 37932056  T
Q  173 ggtcagtaaggaagttca 190  Q
    |||| || || |||||||    
T  37932055 ggtcggtcagaaagttca 37932038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 42920064 - 42920129
Alignment:
Q  108 ttttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtgg 173  Q
    ||||||||||||||||||| ||||| ||| |||||||||  ||| ||| |||||| ||| ||||||    
T  42920064 ttttcctcctacccatctgtacaccttaacatctgcaagcctaaatgttgatcttttatttagtgg 42920129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 7e-39; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 30 - 207
Target Start/End: Original strand, 35310575 - 35310752
Alignment:
Q  30 ggttgtctgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcac 129  Q
    ||||||||||| |||| |||||| ||||||| ||||| | || ||||||||||||||| |||| ||||||| ||||| ||||||||| ||||||| | ||    
T  35310575 ggttgtctgtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaaccccaatcaagtccacacatgcatgttttcctccaacccatccgtac 35310674  T
Q  130 accataatatctgcaagtttaactgtcgatcttctatctagtgggtcagtaaggaagttcacagggacctccttcttc 207  Q
    | ||||| ||| |||||  ||| ||| ||||||||||||||||||||||| ||||||||||||||  |||||||||||    
T  35310675 atcataacatccgcaagcctaagtgttgatcttctatctagtgggtcagttaggaagttcacaggcgcctccttcttc 35310752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 194
Target Start/End: Original strand, 27336837 - 27336984
Alignment:
Q  47 taaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaag 146  Q
    |||||| ||| ||| ||||| | || |||||||||||||||||||| ||||||| ||||| ||||||||| ||||||| | ||||||||| ||| ||| |    
T  27336837 taaaagcccccacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcctccaacccatccgtacaccataacatccgcagg 27336936  T
Q  147 tttaactgtcgatcttctatctagtgggtcagtaaggaagttcacagg 194  Q
      ||| ||||||||||||||||||||||||||| || |||||||||||    
T  27336937 cctaagtgtcgatcttctatctagtgggtcagtcagaaagttcacagg 27336984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 185
Target Start/End: Complemental strand, 32269770 - 32269622
Alignment:
Q  37 tgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataa 136  Q
    |||| ||||||||||| ||||||  |||| || |  |||||||||||||||||||| || |||| ||||| ||||||||||||||||| | |||||||||    
T  32269770 tgtcctaccataaaaggcccgacacctaattccagaagtggtgaaaccccagtcaagtctacacatgcatgttttcctcctacccatccgtacaccataa 32269671  T
Q  137 tatctgcaagtttaactgtcgatcttctatctagtgggtcagtaaggaa 185  Q
     |||||||  ||| | ||| ||||||||||||||||||||||| |||||    
T  32269670 catctgcagatttgagtgttgatcttctatctagtgggtcagttaggaa 32269622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 36 - 207
Target Start/End: Complemental strand, 33692029 - 33691859
Alignment:
Q  36 ctgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccata 135  Q
    ||||| |||| |||||| ||||||| ||||| | || |||||||||||| ||||||| ||||||| ||||| ||||||||| ||||||| | ||||||||    
T  33692029 ctgtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaacctcagtcaagtccacacatgcatgttttcctccaacccatccgtacaccata 33691930  T
Q  136 atatctgcaagtttaactgtcgatcttctatctagtgggtcagtaaggaagttcacagggacctccttcttc 207  Q
    | || |||| | |||| |||||||||||||||||| |||||||| || |||||| || |  |||||||||||    
T  33691929 acatttgcaggcttaagtgtcgatcttctatctag-gggtcagtcagaaagttcgcaagcgcctccttcttc 33691859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 207
Target Start/End: Complemental strand, 13166855 - 13166713
Alignment:
Q  64 aaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttc 163  Q
    ||||| || ||||||||||||| |||||| ||||||| ||||| ||||||||| ||||||| | | ||||||| ||| ||| | |||| |||||||||||    
T  13166855 aaatccacaagtggtgaaaccc-agtcaagtccacacatgcatgttttcctccaacccatccgtagaccataacatccgcatgcttaagtgtcgatcttc 13166757  T
Q  164 tatctagtgggtcagtaaggaagttcacagggacctccttcttc 207  Q
    |||||||||||||||| || |||||||||||  | |||||||||    
T  13166756 tatctagtgggtcagtcagaaagttcacaggcgcttccttcttc 13166713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 191
Target Start/End: Original strand, 433416 - 433580
Alignment:
Q  27 taaggttgtctgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctg 126  Q
    ||||||||||| || |||| |||||| ||| |||  |||| | ||  ||||||||||||| ||||| ||||||| ||||||||||||||| |||||||||    
T  433416 taaggttgtctatcctaccgtaaaagcccctacccttaaacccacaggtggtgaaaccccggtcaagtccacacatgcatattttcctccaacccatctg 433515  T
Q  127 cacaccataatatctgcaagtttaactgtcgatcttctatctagtgggtcagtaaggaagttcac 191  Q
     ||||||||| ||| ||| |  ||| ||| |||||||||| ||||||| |||| || ||||||||    
T  433516 tacaccataacatccgcatgcctaagtgtggatcttctatttagtgggccagtcagaaagttcac 433580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 55 - 193
Target Start/End: Original strand, 43129686 - 43129823
Alignment:
Q  55 ccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactg 154  Q
    |||||| ||||  |||| |||||||||||||||||||| | ||||| ||||| ||||||||||| ||||| | ||| ||||| ||||||| |  ||| ||    
T  43129686 ccgacccctaatccaacaagtggtgaaaccccagtcaatttcacacatgcat-ttttcctcctatccatccgtacatcataacatctgcatgcctaagtg 43129784  T
Q  155 tcgatcttctatctagtgggtcagtaaggaagttcacag 193  Q
    ||||||||||||||||| | |||||||| ||||||||||    
T  43129785 tcgatcttctatctagtagatcagtaagaaagttcacag 43129823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 34335515 - 34335613
Alignment:
Q  81 aaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtgggtcagt 179  Q
    ||||||||| || ||||||| ||||| |||||||||||| ||| || ||||||||| || ||||||  ||| |||||||||||||||||||||||||||    
T  34335515 aaccccagtgaattccacacatgcatgttttcctcctactcatttgtacaccataacatatgcaagcctaagtgtcgatcttctatctagtgggtcagt 34335613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 207
Target Start/End: Original strand, 38446300 - 38446470
Alignment:
Q  37 tgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataa 136  Q
    ||||||||| |||||| ||| ||  ||||| | || |||||||||||| ||||||| ||||||| ||||| |||| |||| ||||||| | |||||||||    
T  38446300 tgtcataccgtaaaagccccaactcctaaacccacaagtggtgaaacctcagtcaagtccacacatgcatgttttactccaacccatccgtacaccataa 38446399  T
Q  137 tatctgcaagtttaactgtcgatcttctatctagtgggtcagtaaggaagttcacagggacctccttcttc 207  Q
     || |||| |  ||| ||||||| |||||||||| |||||||| || || |||||| |  |||||||||||    
T  38446400 catttgcatgcctaagtgtcgatattctatctagagggtcagtcagaaaattcacatgcgcctccttcttc 38446470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 207
Target Start/End: Complemental strand, 26212520 - 26212385
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatatttt-cctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagt 171  Q
    |||| |||||||||||||||||| |||| ||||| |||| || |||| ||| | | ||||||| | ||||||| |  | | ||| |||||||||||||||    
T  26212520 agtgatgaaaccccagtcaaatctacacatgcatttttttccacctagccacccgtacaccatcacatctgcatgcctgagtgttgatcttctatctagt 26212421  T
Q  172 gggtcagtaaggaagttcacagggacctccttcttc 207  Q
    |||||||| ||||||||||||||  |||||||||||    
T  26212420 gggtcagtcaggaagttcacaggcgcctccttcttc 26212385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 213
Target Start/End: Complemental strand, 15292006 - 15291823
Alignment:
Q  30 ggttgtctgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcac 129  Q
    ||||||||||||||||  ||||| ||||||   |||  |||| |||||||||||| || |||| || ||||   ||| ||||||||||||||| | | ||    
T  15292006 ggttgtctgtcataccgcaaaaggcccgacacttaatccaacaagtggtgaaacctcattcaagtctacacaaacatgttttcctcctacccagccgtac 15291907  T
Q  130 accataatatctgcaagtttaactgtcgatcttctatctagtgggtcagtaaggaagttcacagggacctccttcttctctgct 213  Q
    ||||||| ||  ||| |  | | ||| |||||||||||||||||||||||  |||||||||||||  | ||||||||| |||||    
T  15291906 accataacattcgcaggcctgagtgttgatcttctatctagtgggtcagttgggaagttcacaggcgcttccttcttcactgct 15291823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 207
Target Start/End: Complemental strand, 3114065 - 3113968
Alignment:
Q  109 tttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtgggtcagtaaggaagttcacagggacctccttcttc 207  Q
    ||||||| ||||||| || ||||||||| ||||||| |  ||| ||| |||||||||||||||||| ||||  | |||||||||||| |||||||||||    
T  3114065 tttcctcttacccatttgtacaccataacatctgcatgactaagtgttgatcttctatctagtggg-cagtcggcaagttcacaggggcctccttcttc 3113968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 35456123 - 35456189
Alignment:
Q  70 acgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataa 136  Q
    ||||||||  ||||||| ||||| ||||||| ||||||||| ||||||||||||||| |||||||||    
T  35456123 acgagtggcaaaaccccggtcaagtccacacatgcatatttacctcctacccatctgtacaccataa 35456189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 190
Target Start/End: Complemental strand, 9841264 - 9841146
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatct-gcacaccataatatctgcaagtttaactgtcgatcttctatctagt 171  Q
    ||||||||||||| | |||| |  ||||  |||| |||| || |||||||||  ||||||||||| ||| ||| |  ||| |||||||||||||||||||    
T  9841264 agtggtgaaaccctactcaagtttacacacgcatgtttttcttctacccatcccgcacaccataacatccgcaggcctaagtgtcgatcttctatctagt 9841165  T
Q  172 gggtcagtaaggaagttca 190  Q
     ||| ||| ||||||||||    
T  9841164 aggtaagtcaggaagttca 9841146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 207
Target Start/End: Complemental strand, 50000902 - 50000728
Alignment:
Q  33 tgtctgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacacc 132  Q
    |||||||| |||| |||||| ||| ||| || || | || |||||||||||||||||||| ||||||| ||||| ||||||||| ||||||| | |||||    
T  50000902 tgtctgtcctaccgtaaaagcccccaccccttaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcctccaacccatccgtacacc 50000803  T
Q  133 ataatatctgcaagtttaactgtcgatcttctatctagtgggtcagtaaggaagttcacagggacctccttcttc 207  Q
    |||| ||| ||| |  ||| ||||||||||||||||||||||||||| || |||||||||||  |||||||||||    
T  50000802 ataacatccgcaggcctaagtgtcgatcttctatctagtgggtcagtcagaaagttcacaggcgcctccttcttc 50000728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 207
Target Start/End: Original strand, 3330083 - 3330254
Alignment:
Q  36 ctgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccata 135  Q
    ||||| |||| |||||| ||| ||| ||||| | || |||||||||||||||||||| ||||||| ||||  ||||||||| | ||||| | ||||||||    
T  3330083 ctgtcctaccgtaaaagcccccacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcacgttttcctccaatccatccgtacaccata 3330182  T
Q  136 atatctgcaagtttaactgtcgatcttctatctagtgggtcagtaaggaagttcacagggacctccttcttc 207  Q
    | ||||||| |  ||| ||| ||||||||||||||||||||||| || |||||||||||  |||||||||||    
T  3330183 acatctgcatgcctaagtgttgatcttctatctagtgggtcagtcagaaagttcacaggtgcctccttcttc 3330254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 47 - 204
Target Start/End: Original strand, 31847231 - 31847388
Alignment:
Q  47 taaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaag 146  Q
    |||||| ||| ||| ||||| | || ||||||||||||| |||||| ||||||| ||||| ||||||||| | ||||||| ||||||||||||||||| |    
T  31847231 taaaagcccccacccctaaacccacaagtggtgaaaccctagtcaagtccacacatgcatgttttcctccaatccatctgtacaccataatatctgcagg 31847330  T
Q  147 tttaactgtcgatcttctatctagtgggtcagtaaggaagttcacagggacctccttc 204  Q
      ||| |||| ||||| |||||||||||||||| || |||||||||||  ||||||||    
T  31847331 cctaagtgtcaatcttttatctagtgggtcagtcagaaagttcacaggcgcctccttc 31847388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 47 - 192
Target Start/End: Original strand, 132531 - 132676
Alignment:
Q  47 taaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaag 146  Q
    |||||| ||||||| ||||  |||| |||||||||||||||||||| | ||||| ||||||||||||||||||  ||||| ||||||||| ||||||| |    
T  132531 taaaagtcccgacccctaatccaacaagtggtgaaaccccagtcaagttcacacatgcatattttcctcctacgtatctgtacaccataacatctgcatg 132630  T
Q  147 tttaactgtcgatcttctatctagtgggtcagtaaggaagttcaca 192  Q
       || |||||||||||||||||||||  |||| | ||||||||||    
T  132631 ccgaagtgtcgatcttctatctagtggaccagtcaagaagttcaca 132676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 77 - 207
Target Start/End: Original strand, 25706683 - 25706813
Alignment:
Q  77 gtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtgggtc 176  Q
    ||||||||| | |||| ||||||| ||||| |||| |||||||||||||| ||||||||| ||  | | | |||| ||||||||||||||||||||||||    
T  25706683 gtgaaacccaaatcaagtccacacatgcatgtttttctcctacccatctgtacaccataacatacgtaggcttaagtgtcgatcttctatctagtgggtc 25706782  T
Q  177 agtaaggaagttcacagggacctccttcttc 207  Q
    ||| || ||||||||| |  |||||||||||    
T  25706783 agtcagaaagttcacatgcgcctccttcttc 25706813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 30 - 192
Target Start/End: Original strand, 26521615 - 26521777
Alignment:
Q  30 ggttgtctgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcac 129  Q
    |||||| |||| |||||||||||  | |||| ||||  | || |||| |||||| |||||||| |||| || ||||| |||||||||||||| |||| ||    
T  26521615 ggttgtttgtcctaccataaaaggtctgacccctaatcccacaagtgatgaaactccagtcaagtccatacatgcatgttttcctcctacccgtctgtac 26521714  T
Q  130 accataatatctgcaagtttaactgtcgatcttctatctagtgggtcagtaaggaagttcaca 192  Q
    |||||||  |  | | | |||| ||||||||||||||||||||||||||| || ||| |||||    
T  26521715 accataaccttcgtaggcttaaatgtcgatcttctatctagtgggtcagtcagaaagctcaca 26521777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 191
Target Start/End: Complemental strand, 56462042 - 56461926
Alignment:
Q  75 tggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtggg 174  Q
    |||||||||| ||||||| ||||||| ||||| |||||| ||||| |||| | ||||||||| ||  ||| | |||| |||||||||||||||||||||     
T  56462042 tggtgaaacctcagtcaagtccacacatgcatgttttccacctactcatccgtacaccataacattcgcatgcttaagtgtcgatcttctatctagtgga 56461943  T
Q  175 tcagtaaggaagttcac 191  Q
    ||||  ||||| |||||    
T  56461942 tcagccaggaatttcac 56461926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 16957721 - 16957827
Alignment:
Q  88 gtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtgggtcagtaaggaagt 187  Q
    ||||| ||||||| ||||| |||| | |||||||||| | ||||||||| ||||||| |  ||| ||| |||||| ||||||| |||||||| |||||||    
T  16957721 gtcaagtccacacatgcatgttttacacctacccatccgtacaccataacatctgcaggcctaagtgttgatcttttatctagcgggtcagtcaggaagt 16957820  T
Q  188 tcacagg 194  Q
    |||||||    
T  16957821 tcacagg 16957827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 53619713 - 53619819
Alignment:
Q  30 ggttgtctgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcac 129  Q
    ||||| ||||| |||  |||||| ||| ||||||||| | || |||||||||||||||||||| ||||||| ||||| ||||||||| || |||| | ||    
T  53619713 ggttgcctgtcctactgtaaaagcccccacctctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcctccaactcatccgtac 53619812  T
Q  130 accataa 136  Q
    |||||||    
T  53619813 accataa 53619819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 75 - 188
Target Start/End: Original strand, 12053583 - 12053696
Alignment:
Q  75 tggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtggg 174  Q
    ||||||||||||| | |  ||||||| ||||| ||||||||||||||||||| ||| ||||| |||||||     || | |||||||||||||||||||     
T  12053583 tggtgaaaccccaataatgtccacacatgcatgttttcctcctacccatctgtacaacataacatctgcagaccaaagtctcgatcttctatctagtgga 12053682  T
Q  175 tcagtaaggaagtt 188  Q
    ||||| ||||||||    
T  12053683 tcagtcaggaagtt 12053696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 194
Target Start/End: Complemental strand, 12918309 - 12918188
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    |||| |||||| |||||||| | ||||| ||||| |||||||| ||||||||   ||||||| | |||  || |  ||| ||||||||||||||||||||    
T  12918309 agtgatgaaactccagtcaactacacacatgcatgttttcctcttacccatccatacaccatgacatccacaggcctaagtgtcgatcttctatctagtg 12918210  T
Q  173 ggtcagtaaggaagttcacagg 194  Q
    ||||||| || |||||||||||    
T  12918209 ggtcagttagaaagttcacagg 12918188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 193
Target Start/End: Original strand, 53170674 - 53170791
Alignment:
Q  70 acgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatcta 169  Q
    ||||||||||||||||||||||| || ||||  |||| |||||| |||||||||      |||||||  |||||| |  ||| ||| |||||||||||||    
T  53170674 acgagtggtgaaaccccagtcaagtctacacaagcatgttttccacctacccat------accataacgtctgcatgcctaagtgttgatcttctatcta 53170767  T
Q  170 gtgggtcagtaaggaagttcacag 193  Q
    || ||||||| |||||||||||||    
T  53170768 gtaggtcagtcaggaagttcacag 53170791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 30940592 - 30940542
Alignment:
Q  157 gatcttctatctagtgggtcagtaaggaagttcacagggacctccttcttc 207  Q
    ||||||||||||||||||||||| ||||||||||||||  |||||||||||    
T  30940592 gatcttctatctagtgggtcagtcaggaagttcacaggtgcctccttcttc 30940542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 176
Target Start/End: Original strand, 25504420 - 25504566
Alignment:
Q  30 ggttgtctgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcac 129  Q
    ||||| |||||||||| |||||| || |||  ||||  | || |||||||||||| ||||||| || | || ||||| |||| |||||||||||| | ||    
T  25504420 ggttgcctgtcataccgtaaaaggcctgacgcctaatcccacaagtggtgaaacctcagtcaagtctatacatgcatgtttttctcctacccatccgtac 25504519  T
Q  130 accataatatctgcaagtttaactgtcgatcttctatctagtgggtc 176  Q
    ||||||| ||| ||| || | | |||  | |||||||||||||||||    
T  25504520 accataacatccgcatgtctgagtgttaaacttctatctagtgggtc 25504566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 53098574 - 53098644
Alignment:
Q  72 gagtggtgaaaccccag-tcaaatccacacttgcatattttcctcctacccatctgcacaccataatatct 141  Q
    |||| |||||||||| | |||| |||||| |||||| ||||||||||||||||| | ||||||||| ||||    
T  53098574 gagtagtgaaacccccgatcaagtccacatttgcatgttttcctcctacccatccgtacaccataacatct 53098644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 18534585 - 18534673
Alignment:
Q  88 gtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtgggtc 176  Q
    ||||| ||||||| ||||| ||||||| ||||||||| | | ||||||| || || | |  ||| ||||||||||| ||||||||||||    
T  18534585 gtcaagtccacacatgcatgttttccttctacccatccgtataccataacatttgtaggcctaagtgtcgatcttcaatctagtgggtc 18534673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 30 - 207
Target Start/End: Complemental strand, 28517267 - 28517090
Alignment:
Q  30 ggttgtctgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcac 129  Q
    ||||||||||| |||  |||||| ||| ||| ||||| | || |||||||||||||||||||| ||||||| | ||| ||||||||| ||||||| | ||    
T  28517267 ggttgtctgtcctactgtaaaagcccccacccctaaacccacaagtggtgaaaccccagtcaagtccacacatacatgttttcctccaacccatccgtac 28517168  T
Q  130 accataatatctgcaagtttaactgtcgatcttctatctagtgggtcagtaaggaagttcacagggacctccttcttc 207  Q
    ||||||| || |||| |  ||| ||||||||||||||||||||||||||| || |||||||||||  |||||||||||    
T  28517167 accataacatttgcaggcctaagtgtcgatcttctatctagtgggtcagtcagaaagttcacaggcgcctccttcttc 28517090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 47 - 193
Target Start/End: Original strand, 5825415 - 5825561
Alignment:
Q  47 taaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaag 146  Q
    |||||| | ||||| ||||| | || |||||||||||||||||||| ||||||| ||||| ||||||||| ||||||  | ||||||||| ||| ||| |    
T  5825415 taaaagcctcgacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcctccaacccattcgtacaccataacatccgcagg 5825514  T
Q  147 tttaactgtcgatcttctatctagtgggtcagtaaggaagttcacag 193  Q
      ||  ||||||||||||||||||||||||| | || ||||||||||    
T  5825515 cctatgtgtcgatcttctatctagtgggtcaatcagaaagttcacag 5825561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 43857002 - 43857149
Alignment:
Q  31 gttgtctgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcaca 130  Q
    |||||||||| |||  |||||| ||||||| ||||  | || |||||||||||||| ||||| ||||| | || || |||| |||||||||||| | |||    
T  43857002 gttgtctgtcctactgtaaaagccccgacccctaatcccacaagtggtgaaacccccgtcaagtccacgcatgtatgtttttctcctacccatccgtaca 43857101  T
Q  131 ccataatatctgcaagtttaactgtcgatcttctatctagtgggtcag 178  Q
    |||||| ||||||| |  ||| ||| ||||||||||||||||||||||    
T  43857102 ccataacatctgcaggcctaagtgttgatcttctatctagtgggtcag 43857149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 207
Target Start/End: Original strand, 3676810 - 3676944
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    |||||||||||||||||||| || ||||  |||| |||||| ||||||||||   ||||||||| |||| ||||  | | ||| ||| ||||||||| ||    
T  3676810 agtggtgaaaccccagtcaagtctacacaagcatgttttccacctacccatccctacaccataacatctacaagcctgagtgttgattttctatctattg 3676909  T
Q  173 ggtcagtaaggaagttcacagggacctccttcttc 207  Q
    ||||||| ||||||||||||||  |||||||||||    
T  3676910 ggtcagtcaggaagttcacaggtgcctccttcttc 3676944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 73 - 207
Target Start/End: Original strand, 4501428 - 4501562
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    |||||||||||||||||||| || |||| ||||| ||||||||||||| ||| | ||||||||| ||| ||  |  | | |||  |||||||||||||||    
T  4501428 agtggtgaaaccccagtcaagtctacacatgcatgttttcctcctacctatccgtacaccataacatccgctggcctgagtgtttatcttctatctagtg 4501527  T
Q  173 ggtcagtaaggaagttcacagggacctccttcttc 207  Q
    ||||| | |||||||||||| | ||||| ||||||    
T  4501528 ggtcattcaggaagttcacaagcacctctttcttc 4501562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 193
Target Start/End: Complemental strand, 45613779 - 45613659
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    |||||||||||||||||||| || |||| ||||| ||||||||||||||||  | ||| ||||| ||| ||| |  | | ||| |||||||| ||||| |    
T  45613779 agtggtgaaaccccagtcaagtctacacatgcatgttttcctcctacccattcgtacatcataacatccgcaggcctgagtgttgatcttctttctagcg 45613680  T
Q  173 ggtcagtaaggaagttcacag 193  Q
    ||||||| |||||||||||||    
T  45613679 ggtcagtcaggaagttcacag 45613659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 207
Target Start/End: Original strand, 19277463 - 19277597
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    |||||||||||||||||||| || ||||  |||| |||||| |||||||||| | | ||||||| ||| ||| |  | | ||| ||||||||||||||||    
T  19277463 agtggtgaaaccccagtcaagtctacacaagcatgttttccacctacccatccgtagaccataacatccgcaggcctgagtgttgatcttctatctagtg 19277562  T
Q  173 ggtcagtaaggaagttcacagggacctccttcttc 207  Q
     |||||| |||||||| | |||  |||||||||||    
T  19277563 cgtcagtcaggaagtttataggtgcctccttcttc 19277597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 192
Target Start/End: Original strand, 47679295 - 47679414
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    ||||||||||||| |||||| || | || || || ||||||||||||||||  |||| |||| | ||  | ||||  || ||||||||||||||||||||    
T  47679295 agtggtgaaaccctagtcaagtctagacatgtatgttttcctcctacccattcgcacgccattacattcgtaagtcaaagtgtcgatcttctatctagtg 47679394  T
Q  173 ggtcagtaaggaagttcaca 192  Q
     |||||| || |||||||||    
T  47679395 cgtcagtcagaaagttcaca 47679414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 207
Target Start/End: Original strand, 10905269 - 10905407
Alignment:
Q  68 caacgagtggtgaaaccc-cagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctat 166  Q
    |||| |||||||||| || ||||||| | ||||| ||||| ||||||||||| ||||| | ||||||  | ||||||| |  ||| |||||||||| |||    
T  10905269 caacaagtggtgaaaacctcagtcaagttcacacatgcatgttttcctcctatccatccgtacacca--acatctgcaggcctaagtgtcgatcttatat 10905366  T
Q  167 ctagtgggtcagtaaggaagttcacagggacctccttcttc 207  Q
    ||||||| |||  ||| ||||||| |||  |||||||||||    
T  10905367 ctagtggatcaacaagaaagttcataggctcctccttcttc 10905407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 983203 - 983253
Alignment:
Q  157 gatcttctatctagtgggtcagtaaggaagttcacagggacctccttcttc 207  Q
    ||||||||||||||||||||||| ||||||||||| |   |||||||||||    
T  983203 gatcttctatctagtgggtcagttaggaagttcaccgacgcctccttcttc 983253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 207
Target Start/End: Complemental strand, 35739963 - 35739790
Alignment:
Q  33 tgtctgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacacc 132  Q
    |||||||| |||| |||||| |||||||| |||  | || |||||||||||||||||||| ||||||| ||||| ||||||||||||||||    |||||    
T  35739963 tgtctgtcctaccgtaaaaggcccgacct-taatcccactagtggtgaaaccccagtcaagtccacacatgcatgttttcctcctacccattcatacacc 35739865  T
Q  133 ataatatctgcaagtttaactgtcgatcttctatctagtgggtcagtaaggaagttcacagggacctccttcttc 207  Q
    |||| ||||||| |  ||| ||| ||||||||| | | ||||||||| || ||||||||||| ||||||||||||    
T  35739864 ataacatctgcatgcctaagtgttgatcttctaccaaatgggtcagtcagaaagttcacaggcacctccttcttc 35739790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 73 - 207
Target Start/End: Original strand, 39434837 - 39434971
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    |||||||||||||||||||| | ||||| ||||| ||||||||| ||||||| | ||||||||| |||  ||    ||| ||||||||||||||||||||    
T  39434837 agtggtgaaaccccagtcaagtacacacatgcatgttttcctccaacccatccgtacaccataacatcgacagacctaagtgtcgatcttctatctagtg 39434936  T
Q  173 ggtcagtaaggaagttcacagggacctccttcttc 207  Q
    ||||||| || |||||||||||  |||||||||||    
T  39434937 ggtcagtcagaaagttcacaggcgcctccttcttc 39434971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 25021751 - 25021632
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    ||||||||||| || ||||| ||||||| ||||| ||||||||||||||||| | ||||||||| ||||||| |  ||| || |||||||||||||||||    
T  25021751 agtggtgaaactccggtcaagtccacacatgcatgttttcctcctacccatccgtacaccataacatctgcaggcctaagtgacgatcttctatctagtg 25021652  T
Q  173 ggtcagtaaggaagttcaca 192  Q
    ||||||  | ||||||||||    
T  25021651 ggtcagacaagaagttcaca 25021632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 193
Target Start/End: Original strand, 24125198 - 24125318
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    |||||||||||||||||||| || |||| ||||| ||||| |||||||| || | | ||||||| || |||| |  | | ||| ||||||||||||||||    
T  24125198 agtggtgaaaccccagtcaagtctacacatgcatgttttcttcctacccgtcagtagaccataacatatgcaggcctgagtgttgatcttctatctagtg 24125297  T
Q  173 ggtcagtaaggaagttcacag 193  Q
    ||||||| |||||||| ||||    
T  24125298 ggtcagtcaggaagttgacag 24125318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 207
Target Start/End: Complemental strand, 42922059 - 42921930
Alignment:
Q  78 tgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtgggtca 177  Q
    |||||| |||||||| ||||||| ||  | ||||||||||||||||||| ||||||||| |||| ||    ||| |||| ||||||||| ||||| || |    
T  42922059 tgaaactccagtcaagtccacacatgtttgttttcctcctacccatctgtacaccataacatctacatacgtaagtgtcaatcttctatatagtgagtaa 42921960  T
Q  178 gtaaggaagttcacagggacctccttcttc 207  Q
    || | |||||||| ||||  ||||||||||    
T  42921959 gtcaagaagttcataggggtctccttcttc 42921930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 207
Target Start/End: Original strand, 37517259 - 37517393
Alignment:
Q  68 caacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatc 167  Q
    |||| ||||| |||||||||||||| || ||||   |||||||||| |||||||||| | ||||||| | || |||| |  | | ||| |||||||||||    
T  37517259 caacaagtggcgaaaccccagtcaagtctacacaaacatattttccacctacccatccgtacaccatcacatttgcaggcatgagtgttgatcttctatc 37517358  T
Q  168 tagtgggtcagtaaggaagttcacagggacctccttcttc 207  Q
    ||||||||     ||||||||||||||  |||||||||||    
T  37517359 tagtgggt-----aggaagttcacaggcgcctccttcttc 37517393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 192
Target Start/End: Complemental strand, 39671111 - 39671005
Alignment:
Q  86 cagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtgggtcagtaaggaa 185  Q
    ||||||| ||||||| |||||||||| |||||||||||||  ||||| ||| ||| |||    ||| |||||||||  |||||||||||||||| || ||    
T  39671111 cagtcaagtccacacatgcatatttttctcctacccatctagacaccgtaacatccgcagacctaaatgtcgatctaatatctagtgggtcagttagaaa 39671012  T
Q  186 gttcaca 192  Q
     ||||||    
T  39671011 tttcaca 39671005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 3188103 - 3188202
Alignment:
Q  36 ctgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccata 135  Q
    ||||| |||| |||||| ||||||| ||||| | || |||||||||||||||  |||  |||||| ||||| ||||||||| | ||||| | ||||||||    
T  3188103 ctgtcctaccgtaaaagccccgacc-ctaaacccacaagtggtgaaaccccacacaaggccacacatgcatgttttcctccaatccatccgtacaccata 3188201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 73 - 207
Target Start/End: Complemental strand, 4413003 - 4412869
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    |||||||||||||||||||| || ||||  |||| |||||| |||||||||| | ||||||||| ||| ||| |  | | ||| ||||||||||||||||    
T  4413003 agtggtgaaaccccagtcaagtctacacaagcatgttttccacctacccatccgtacaccataacatccgcaggcctgagtgttgatcttctatctagtg 4412904  T
Q  173 ggtcagtaaggaagttcacagggacctccttcttc 207  Q
    ||||||| ||||||||||||||  |||||||||||    
T  4412903 ggtcagtcaggaagttcacaggtgcctccttcttc 4412869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 73 - 207
Target Start/End: Original strand, 27502531 - 27502665
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    ||||||||||||||| |||  ||||||| ||||| ||||||||| ||||||| | ||||||||| ||| ||| |  ||| ||||||||||  ||||||||    
T  27502531 agtggtgaaaccccattcaggtccacacatgcatgttttcctccaacccatccgtacaccataacatccgcaggcctaagtgtcgatcttgcatctagtg 27502630  T
Q  173 ggtcagtaaggaagttcacagggacctccttcttc 207  Q
    ||||||| || |||||||||||  |||||||||||    
T  27502631 ggtcagtcagaaagttcacaggcgcctccttcttc 27502665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 207
Target Start/End: Complemental strand, 9685352 - 9685218
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    |||||||||||||||||||| || ||||   ||| |||||| ||||||||| ||||||||||||| | |||| |  | | ||| || |||||||||||||    
T  9685352 agtggtgaaaccccagtcaagtctacacaatcatgttttccacctacccatatgcacaccataatgtttgcaggcctgagtgttgaccttctatctagtg 9685253  T
Q  173 ggtcagtaaggaagttcacagggacctccttcttc 207  Q
    ||||||| |||||||||||||   |||||||||||    
T  9685252 ggtcagtcaggaagttcacagaagcctccttcttc 9685218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 207
Target Start/End: Original strand, 17344812 - 17344942
Alignment:
Q  77 gtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtgggtc 176  Q
    |||||||||||||||| || |||| ||||| ||||||||||||||||| | ||||||||| ||| ||| |  | | ||| |||||||| ||||| |||||    
T  17344812 gtgaaaccccagtcaagtctacacatgcatgttttcctcctacccatccgtacaccataacatccgcatgcctgagtgttgatcttctttctagcgggtc 17344911  T
Q  177 agtaaggaagttcacagggacctccttcttc 207  Q
    ||| || |||||||||||  |||||||||||    
T  17344912 agtcagaaagttcacaggcgcctccttcttc 17344942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 207
Target Start/End: Complemental strand, 20142677 - 20142543
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    ||||||||| ||||| |||| || ||||  |||| |||||| |||||||||| | |||||||||| |||||| |||| | ||| ||||||||||||| ||    
T  20142677 agtggtgaagccccaatcaagtctacacaagcatgttttccacctacccatccgtacaccataatgtctgcaggtttgagtgttgatcttctatctactg 20142578  T
Q  173 ggtcagtaaggaagttcacagggacctccttcttc 207  Q
    ||||||| |||||||||| ||   |||||||||||    
T  20142577 ggtcagtcaggaagttcatagacgcctccttcttc 20142543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 207
Target Start/End: Original strand, 28225174 - 28225304
Alignment:
Q  77 gtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtgggtc 176  Q
    ||||||||||| |||| ||||||| ||||| ||||||||| ||||||| | ||||||||| ||| | | |  ||| ||||||| |||||||||||||||     
T  28225174 gtgaaaccccattcaagtccacacatgcatgttttcctccaacccatccgtacaccataacatccgtaggcctaagtgtcgatattctatctagtgggta 28225273  T
Q  177 agtaaggaagttcacagggacctccttcttc 207  Q
    ||| || ||||||||||| |||||| |||||    
T  28225274 agtcagaaagttcacaggcacctccctcttc 28225304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 207
Target Start/End: Complemental strand, 41867841 - 41867711
Alignment:
Q  77 gtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtgggtc 176  Q
    |||||| | ||||||| || ||||  |||| |||||| |||||||||||| ||||||||| ||| ||| |  | | ||| ||||||||||||||||||||    
T  41867841 gtgaaatctcagtcaagtctacacaagcatgttttccacctacccatctgtacaccataacatccgcaggcctgagtgttgatcttctatctagtgggtc 41867742  T
Q  177 agtaaggaagttcacagggacctccttcttc 207  Q
    ||| ||||||||||||||  |||||||||||    
T  41867741 agtcaggaagttcacaggtgcctccttcttc 41867711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 35 - 193
Target Start/End: Original strand, 3825859 - 3826017
Alignment:
Q  35 tctgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccat 134  Q
    ||||||||||| |||||| || |||| ||||  | || || ||||||||| || |||| ||||||| ||||| |||| ||||||| ||| || ||||| |    
T  3825859 tctgtcataccgtaaaagtcctgacccctaatcccacaaggggtgaaacctcaatcaagtccacacatgcatgtttttctcctactcatttgtacacctt 3825958  T
Q  135 aatatctgcaagtttaactgtcgatcttctatctagtgggtcagtaaggaagttcacag 193  Q
    || |||  ||||  |||  |||||||||||||||||||||||||| || ||||||||||    
T  3825959 aacatccacaagcataaaggtcgatcttctatctagtgggtcagtcagaaagttcacag 3826017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 73 - 207
Target Start/End: Complemental strand, 23484875 - 23484741
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    ||||||||||||||| |||| || |||| ||||| ||||||||||||||||| | ||| ||||| || |||| | || | ||| |||||||||| ||||     
T  23484875 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccatccgtacatcataacatatgcatgcttgagtgttgatcttctatatagta 23484776  T
Q  173 ggtcagtaaggaagttcacagggacctccttcttc 207  Q
    ||||| | |||||||||||||   |||||||||||    
T  23484775 ggtcaatcaggaagttcacagacgcctccttcttc 23484741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 33 - 207
Target Start/End: Original strand, 44686549 - 44686722
Alignment:
Q  33 tgtctgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacacc 132  Q
    |||||||| || | |||||| ||||||| ||||| | || |||||||||||||||||||| ||||||| ||||| ||||| ||| |  ||| || |||||    
T  44686549 tgtctgtcctatcgtaaaagccccgacccctaaacccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcgtcc-aaacatttgtacacc 44686647  T
Q  133 ataatatctgcaagtttaactgtcgatcttctatctagtgggtcagtaaggaagttcacagggacctccttcttc 207  Q
    |||| ||| ||| |  ||| |||| |||||||||||||| | ||||| |  |||||||||||  |||||||||||    
T  44686648 ataacatccgcaggcctaagtgtcaatcttctatctagtagatcagtcacaaagttcacaggcccctccttcttc 44686722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 206
Target Start/End: Complemental strand, 18744891 - 18744758
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    |||||||||||||||||||| || |||| ||||| ||||||||||||||||| | ||||||||| | | ||| |  | | ||| ||| |||| ||||| |    
T  18744891 agtggtgaaaccccagtcaagtctacacatgcatgttttcctcctacccatccgtacaccataacacccgcaggcctgagtgttgatattctttctagcg 18744792  T
Q  173 ggtcagtaaggaagttcacagggacctccttctt 206  Q
    ||||||| ||||| |||||||| |||| ||||||    
T  18744791 ggtcagtcaggaaattcacaggcaccttcttctt 18744758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 193
Target Start/End: Complemental strand, 13147071 - 13146951
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    |||||||||||| ||||||| | ||||| | | | ||||| ||||||||||  | ||||||||| |||| || |  ||| ||||||||||||||||||||    
T  13147071 agtggtgaaaccacagtcaagttcacacatccgtgttttcttcctacccatgcgtacaccataacatctacatgcctaaatgtcgatcttctatctagtg 13146972  T
Q  173 ggtcagtaaggaagttcacag 193  Q
    ||| | | |||||||||||||    
T  13146971 ggttaatcaggaagttcacag 13146951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 207
Target Start/End: Original strand, 9675013 - 9675148
Alignment:
Q  72 gagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagt 171  Q
    |||||||||||||||| |||| | || || ||||| |||||||||||| |||  | ||| ||||| ||||||| || ||| |||||||||| ||| || |    
T  9675013 gagtggtgaaaccccaatcaagttcatacatgcatgttttcctcctactcattcgtacatcataacatctgcatgtctaagtgtcgatcttttatttaat 9675112  T
Q  172 gggtcagtaaggaagttcacagggacctccttcttc 207  Q
     |||| || || |||||||||||  |||| ||||||    
T  9675113 cggtcggtcagaaagttcacaggcgcctcattcttc 9675148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 10579716 - 10579667
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctaccca 122  Q
    |||||||||||||||||||| ||||||  ||||| |||||||||||||||    
T  10579716 agtggtgaaaccccagtcaagtccacaaatgcatgttttcctcctaccca 10579667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 47 - 192
Target Start/End: Original strand, 34304640 - 34304785
Alignment:
Q  47 taaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaag 146  Q
    |||||| ||||||  ||||| | || ||||||||||||||| |||| ||||||| ||||| |||||||||  |||||| | ||||||||| ||| ||| |    
T  34304640 taaaagccccgactcctaaacccacaagtggtgaaaccccaatcaagtccacacatgcatgttttcctccagcccatccgtacaccataacatccgcagg 34304739  T
Q  147 tttaactgtcgatcttctatctagtgggtcagtaaggaagttcaca 192  Q
      ||| ||||||||||||||||||||||||||| || |||||||||    
T  34304740 cctaagtgtcgatcttctatctagtgggtcagtcagaaagttcaca 34304785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 36 - 207
Target Start/End: Complemental strand, 357691 - 357520
Alignment:
Q  36 ctgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccata 135  Q
    ||||| |||| ||||||  |||||| ||||| | || ||||||||||| |||||||| ||||||| ||||| |||| |||| |||||||   ||||||||    
T  357691 ctgtcctaccgtaaaagcaccgacccctaaacccacaagtggtgaaactccagtcaagtccacacatgcatgttttgctccaacccatccatacaccata 357592  T
Q  136 atatctgcaagtttaactgtcgatcttctatctagtgggtcagtaaggaagttcacagggacctccttcttc 207  Q
    | |||||||    ||| |||||||||||||||||||| |||||| |  ||||||||| || |||||||||||    
T  357591 acatctgcatacctaagtgtcgatcttctatctagtgtgtcagtcaaaaagttcacaagggcctccttcttc 357520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 73 - 207
Target Start/End: Original strand, 12401501 - 12401635
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    ||||||||||||||| |||| || |||| ||||| ||||||||||||||||| | ||||||||| || ||||   |||| | | ||||| |||||||||     
T  12401501 agtggtgaaaccccaatcaagtctacacatgcatgttttcctcctacccatccgtacaccataacatttgcagacttaagtcttgatctgctatctagta 12401600  T
Q  173 ggtcagtaaggaagttcacagggacctccttcttc 207  Q
    ||||||| ||||||||||||||  |||||||||||    
T  12401601 ggtcagtcaggaagttcacaggcgcctccttcttc 12401635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 71 - 177
Target Start/End: Complemental strand, 29338022 - 29337916
Alignment:
Q  71 cgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctag 170  Q
    |||||||| ||||| |  |||| ||||||| ||||| ||||||||||||||||||||||||||||| ||||||| |  ||| |||||| |||||||||||    
T  29338022 cgagtggtaaaacctcgatcaagtccacacatgcatgttttcctcctacccatctgcacaccataacatctgcaggcctaagtgtcgaacttctatctag 29337923  T
Q  171 tgggtca 177  Q
    |||||||    
T  29337922 tgggtca 29337916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 207
Target Start/End: Complemental strand, 4206533 - 4206399
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    |||||||||||||||||||| || |||| ||||| ||||||||| |||||| || ||||||||| ||| ||| | || | ||| |||||| |||||||||    
T  4206533 agtggtgaaaccccagtcaagtctacacatgcatgttttcctccaacccatttgtacaccataacatccgcaggcttgagtgttgatcttttatctagtg 4206434  T
Q  173 ggtcagtaaggaagttcacagggacctccttcttc 207  Q
    ||||| | | ||||||||| ||  |||||||||||    
T  4206433 ggtcaatcaagaagttcacgggtgcctccttcttc 4206399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 27 - 144
Target Start/End: Original strand, 28543499 - 28543616
Alignment:
Q  27 taaggttgtctgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctg 126  Q
    ||||| || ||||| |||| |||||| || |||||||||  | || |||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||    
T  28543499 taaggctgcctgtcttaccgtaaaagtcctgacctctaatcccacaagtggtgaaacctcagtcaaatccacacatgcatgttttcctcctatccatctg 28543598  T
Q  127 cacaccataatatctgca 144  Q
     ||| ||||| |||||||    
T  28543599 tacatcataacatctgca 28543616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 33 - 169
Target Start/End: Complemental strand, 33220688 - 33220552
Alignment:
Q  33 tgtctgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacacc 132  Q
    |||||||| |||| |||||| ||||||| ||||| | || |||||||||||||||||||||| ||||| ||||| ||||||||| || |||| | ||| |    
T  33220688 tgtctgtcctaccgtaaaagccccgacccctaaacccacaagtggtgaaaccccagtcaaattcacacatgcatgttttcctccaactcatccgtacatc 33220589  T
Q  133 ataatatctgcaagtttaactgtcgatcttctatcta 169  Q
    |||| ||||||| |  | | |||| ||||||||||||    
T  33220588 ataacatctgcaggcctgagtgtcaatcttctatcta 33220552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 192
Target Start/End: Original strand, 32115859 - 32115978
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    |||| ||||||||| ||||| || |||| ||||| |||||||||||| |||||| ||||||||| ||| ||| |  | | ||| |||||||||||||||     
T  32115859 agtgatgaaaccccggtcaagtctacacatgcatgttttcctcctactcatctgtacaccataacatccgcaggcctgagtgttgatcttctatctagta 32115958  T
Q  173 ggtcagtaaggaagttcaca 192  Q
    ||||||| ||||||||||||    
T  32115959 ggtcagtcaggaagttcaca 32115978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 177
Target Start/End: Complemental strand, 20693553 - 20693434
Alignment:
Q  57 gacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtc 156  Q
    |||||||||  | ||||||||||||||||   |||| | |||| | |||| ||||||||||||||||||| ||||||||||||||||| |  ||| |||     
T  20693553 gacctctaatcccacgagtggtgaaaccctgatcaagttcaca-tagcatgttttcctcctacccatctgtacaccataatatctgcaggcctaagtgtg 20693455  T
Q  157 gatcttctatctagtgggtca 177  Q
    |||||| |||||||| |||||    
T  20693454 gatcttttatctagttggtca 20693434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 17249240 - 17249199
Alignment:
Q  75 tggtgaaaccccagtcaaatccacacttgcatattttcctcc 116  Q
    |||||||||||||||||| ||||||| |||||||||||||||    
T  17249240 tggtgaaaccccagtcaagtccacacatgcatattttcctcc 17249199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 7200510 - 7200442
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatct 141  Q
    |||| |||||||  |||||||| ||||| || |||||||||||||||||| | | |||| |||||||||    
T  7200510 agtgatgaaaccatagtcaaattcacacatgtatattttcctcctacccacccgtacacaataatatct 7200442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 80 - 192
Target Start/End: Original strand, 29861974 - 29862086
Alignment:
Q  80 aaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtgggtcagt 179  Q
    ||||||||||||| | ||||| ||||| ||||||||||||||||| | ||||||||| ||||||| |  ||| |||||||||||||||||||||| |||     
T  29861974 aaaccccagtcaagttcacacatgcatgttttcctcctacccatccgtacaccataacatctgcatgcctaagtgtcgatcttctatctagtgggccaga 29862073  T
Q  180 aaggaagttcaca 192  Q
     | ||||||||||    
T  29862074 caagaagttcaca 29862086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 52741448 - 52741329
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    |||||||||||| ||||||| || ||||  |||| |||||| |||||||||| | | |||| || |||||||||| | | ||| ||||||||||||||||    
T  52741448 agtggtgaaacctcagtcaagtctacacaagcatgttttccacctacccatccgtataccacaacatctgcaagtctgagtgttgatcttctatctagtg 52741349  T
Q  173 ggtcagtaaggaagttcaca 192  Q
    ||||||| ||||||||||||    
T  52741348 ggtcagtcaggaagttcaca 52741329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 207
Target Start/End: Original strand, 44198937 - 44199071
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    |||||||||||||||||||| || |||||  ||| |||||| ||||| ||||   |||||||||| ||  ||||  | | ||| ||||||||||||||||    
T  44198937 agtggtgaaaccccagtcaagtctacactaacatgttttccacctactcatccatacaccataatgtccacaagcctgagtgttgatcttctatctagtg 44199036  T
Q  173 ggtcagtaaggaagttcacagggacctccttcttc 207  Q
    ||||||| | |||||||||||| ||||||||||||    
T  44199037 ggtcagtcacgaagttcacaggcacctccttcttc 44199071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 39583166 - 39583047
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    |||||| |||||  |||||| ||||| | ||||| ||||||||||||||||| | |||| |||| ||| ||| |  ||| ||||||||||||||||||||    
T  39583166 agtggtaaaacctaagtcaagtccacgcatgcatgttttcctcctacccatccgtacactataacatccgcatgcctaagtgtcgatcttctatctagtg 39583067  T
Q  173 ggtcagtaaggaagttcaca 192  Q
    ||||| | || |||||||||    
T  39583066 ggtcaatcagaaagttcaca 39583047  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 73 - 192
Target Start/End: Original strand, 53785879 - 53785998
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    |||||||||||||||||||| || |||| ||||| ||||||||||||||||| | |||||| || ||| ||| |  | | ||| |||||| | ||||| |    
T  53785879 agtggtgaaaccccagtcaagtctacacatgcatgttttcctcctacccatccgtacaccaaaacatccgcatgcctgagtgttgatcttatttctagcg 53785978  T
Q  173 ggtcagtaaggaagttcaca 192  Q
    ||||||| ||||||||||||    
T  53785979 ggtcagttaggaagttcaca 53785998  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 136
Target Start/End: Original strand, 7900997 - 7901091
Alignment:
Q  42 taccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataa 136  Q
    |||| |||||||||| ||| ||||  | || |||||||||||||||||||| ||||||| ||||| |||||||||||| |||||  |||||||||    
T  7900997 taccgtaaaagacccaacccctaatcccacaagtggtgaaaccccagtcaagtccacacatgcatgttttcctcctacacatctatacaccataa 7901091  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 191
Target Start/End: Original strand, 49018133 - 49018251
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    ||||||||||| |||||||| |  |||| ||||| |||||||| |||| ||| | ||||||||| ||||||| |  | | |||  |||||||||||||||    
T  49018133 agtggtgaaactccagtcaagtttacacatgcatgttttcctcgtaccaatccgtacaccataacatctgcatgcctgagtgttaatcttctatctagtg 49018232  T
Q  173 ggtcagtaaggaagttcac 191  Q
    ||||||| |||||||||||    
T  49018233 ggtcagtcaggaagttcac 49018251  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 192
Target Start/End: Original strand, 37992501 - 37992621
Alignment:
Q  72 gagtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagt 171  Q
    ||||| |||||||||  |||| |||||||   ||| ||||||||||||||||| | ||| ||||| |||| ||    ||| |||| |||||||||| |||    
T  37992501 gagtgatgaaaccccgatcaagtccacacacacatgttttcctcctacccatccgtacatcataacatctacagacctaagtgtccatcttctatcaagt 37992600  T
Q  172 gggtcagtaaggaagttcaca 192  Q
    |||||||| || |||||||||    
T  37992601 gggtcagtgagaaagttcaca 37992621  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 26393670 - 26393737
Alignment:
Q  75 tggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctg 142  Q
    ||||||||||||||||| ||| |||| || |||||||||||||| || || | || ||||||||||||    
T  26393670 tggtgaaaccccagtcagatctacacatgtatattttcctcctatccctccgtaccccataatatctg 26393737  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 38146310 - 38146364
Alignment:
Q  153 tgtcgatcttctatctagtgggtcagtaaggaagttcacagggacctccttcttc 207  Q
    ||||||||||||||||||| ||||||| || ||||||||| | ||||| ||||||    
T  38146310 tgtcgatcttctatctagttggtcagtgagaaagttcacaagcacctcattcttc 38146364  T

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Target: scaffold0186 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 19920 - 20025
Alignment:
Q  102 tgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtgggtcagtaaggaagttcacagggacctcc 201  Q
    ||||| ||||||||||||| ||| | ||||||||| |||| || || ||| |||  |||||||||||||||||||||| | |||||||| || | |||||    
T  19920 tgcatgttttcctcctacctatccgtacaccataacatctacaggtctaagtgttcatcttctatctagtgggtcagttaagaagttcagagaggcctcc 20019  T
Q  202 ttcttc 207  Q
    ||||||    
T  20020 ttcttc 20025  T

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Target: scaffold1768 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 121 - 2
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    |||||||||||||||||||| || | || ||||| ||||||||||||||||| | ||| ||||| ||| ||  |  |   ||| |||| |||||||||||    
T  121 agtggtgaaaccccagtcaagtctatacatgcatgttttcctcctacccatccgtacatcataacatccgcgggcctgcgtgttgatcatctatctagtg 22  T
Q  173 ggtcagtaaggaagttcaca 192  Q
    ||||||| ||||||||||||    
T  21 ggtcagtcaggaagttcaca 2  T

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Target: scaffold0148 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 207
Target Start/End: Original strand, 33373 - 33554
Alignment:
Q  27 taaggttgtctgtcataccataaaagacccgacctctaaatcaacgagtggtgaaaccccagtcaaatccacacttgcatat--tttcctcctacccatc 124  Q
    |||||||| ||||| |||| |||||| ||||||  ||||  | |  ||||||||||||||| |||| |   ||| |||||||  ||||||||||||||||    
T  33373 taaggttgcctgtcctaccgtaaaaggcccgacacctaatcccataagtggtgaaaccccaatcaagtttgcacatgcatatgttttcctcctacccatc 33472  T
Q  125 tgcacaccataatatctgcaagtttaactgtcgatcttctatctagtgggtcagtaaggaagttcacagggacctccttcttc 207  Q
     | ||||||||| ||| ||| |  | | ||| ||||||||||||||| || |||| | ||||||||||||  |||||||||||    
T  33473 cgtacaccataacatccgcatgcctgagtgttgatcttctatctagtagg-cagtcaagaagttcacaggcgcctccttcttc 33554  T

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Target: scaffold0110 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 173
Target Start/End: Complemental strand, 47476 - 47376
Alignment:
Q  73 agtggtgaaaccccagtcaaatccacacttgcatattttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtg 172  Q
    ||||||||||||||| |||| ||||||||||||| |||| ||| ||| ||| || ||||||||| || ||||    ||| ||| |||||||||| |||||    
T  47476 agtggtgaaaccccaatcaagtccacacttgcatttttttctcatactcatttgtacaccataacatttgcatccctaagtgttgatcttctatttagtg 47377  T
Q  173 g 173  Q
    |    
T  47376 g 47376  T

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Target: scaffold0224 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 173
Target Start/End: Complemental strand, 18267 - 18202
Alignment:
Q  108 ttttcctcctacccatctgcacaccataatatctgcaagtttaactgtcgatcttctatctagtgg 173  Q
    ||||||||||||||||||| ||||| ||| |||||||||  ||| ||| |||||| ||| ||||||    
T  18267 ttttcctcctacccatctgtacaccttaacatctgcaagcctaaatgttgatcttttatttagtgg 18202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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