View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14556_low_3 (Length: 583)
Name: NF14556_low_3
Description: NF14556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14556_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 44265750 - 44265535
Alignment:
| Q |
18 |
atgtaataggcggtagagaagtatgtaacgtggaggagtcggtgataaagaaaagcaaagaggagaggcgacgattttaccaatgagagcgcaccgcata |
117 |
Q |
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| T |
44265750 |
atgtaataggcggtagagaagtatgtaacgtggaggagtcggtgataactcaaagcaaagaggagaggcgacgattttaccaatgagagcacaccacaga |
44265651 |
T |
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| Q |
118 |
gtcatcatcacccctttgaattgaaatatcattttcaatgtctccctcttcctctttcaccgtaagtt--ctctctttctct-----ttatgcaattcct |
210 |
Q |
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| T |
44265650 |
gtcatcatcatccctttgaattgaaatatcattttcaatgtctccctcttcttctttcaccgtaagttccctctctttctctccatgttatgcaattcct |
44265551 |
T |
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| Q |
211 |
aatttaatcaatgaat |
226 |
Q |
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| T |
44265550 |
actttaatcaatgaat |
44265535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 365 - 445
Target Start/End: Complemental strand, 44265469 - 44265389
Alignment:
| Q |
365 |
tgtttagccatcttggagagcttgtgaacatgtctcacaaacacctcatgaacaatgttcttaactgttttcataagttct |
445 |
Q |
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| T |
44265469 |
tgtttagctatcttggagagcttgtgaacatgtctcacaaacaccttatgaacgatgtcattaactgttttcataagttct |
44265389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 451 - 545
Target Start/End: Complemental strand, 44265325 - 44265231
Alignment:
| Q |
451 |
atattcactaaccattatcaatctcttgctttaatctttaaattgtgttgatctctactctgtcgtgtcaattaacctgtaactataaatcaagt |
545 |
Q |
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| T |
44265325 |
atattcactaagcatcttcaatctcttgctttaatctgaaaatcatgctgatctctactctgtcctgtcaattaacttgtaactataaatcaagt |
44265231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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