View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14556_low_4 (Length: 567)
Name: NF14556_low_4
Description: NF14556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14556_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 52 - 549
Target Start/End: Original strand, 8199053 - 8199550
Alignment:
| Q |
52 |
tatttatttatagataccctagacggctagacttaaaatagatgtcaacaacgaataaattgaagtaaatataaatgcgataacagtctagtactccaac |
151 |
Q |
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| T |
8199053 |
tatttatttatagataccctagacggctagacttaaaatagatgtcaacaacgaataaattgaagtaaatataaatgcgaaaacagtctagtactccaac |
8199152 |
T |
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| Q |
152 |
ttaaaaaccaacttcaaggcctaaaaacatggactgaaaaatgccaaaaacatccccaaagacactttcacacaatcatttaatcattatctagaaaggc |
251 |
Q |
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| T |
8199153 |
ttaaaaaccaacttcaaggcctaaaaacatggactgaaaaatgccaaaaacatccccaaagacactttcacacaatcatttaatcattatctagaaaggc |
8199252 |
T |
|
| Q |
252 |
ctaggataatccagttcctcgattataaatcataaaaacacctgagaaaaattacagggaaatgtaccaagatctacaaaagaaaagcatagattaaatt |
351 |
Q |
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| T |
8199253 |
ctaggataatccagttcctcgattataaatcataaaaacacctgagaaaaattacagggaaatgtaccaagatctacaaaagaaaagcatagattaaatt |
8199352 |
T |
|
| Q |
352 |
aatatgaggttgttgtgatgatgatattggaggttagatcctcaaccaagtaacggatcctacttctaacattattcctcctctaagactgaatagatga |
451 |
Q |
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| T |
8199353 |
aatatgaggttgttgtgatgatgatattggaggttagatcctcaaccaagtaaccgatcctacttctaacattattcctcctctaagactgaatagatga |
8199452 |
T |
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| Q |
452 |
tttctaaccttcaagacgctccttccacccagcaccctttaatagagcgatggtatctgactgtataagagaacccatttggctttcaatctcttcaa |
549 |
Q |
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| T |
8199453 |
tttctaaccttcaagacgctccttccacccagcaccctttaatagagcgatggtatctgactgtataagagaacctatttggctttcaatctcttcaa |
8199550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 439 - 549
Target Start/End: Original strand, 42356545 - 42356655
Alignment:
| Q |
439 |
actgaatagatgatttctaaccttcaagacgctccttccacccagcaccctttaatagagcgatggtatctgactgtataagagaacccatttggctttc |
538 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||| |||||| || |||| || ||||||||||||||||| ||||||||| ||| ||||||| |
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| T |
42356545 |
actgaattgatgatttccaaccttcaagacgctccttccacacagcacttttcaataaagtgatggtatctgactgtagaagagaacctattcggctttc |
42356644 |
T |
|
| Q |
539 |
aatctcttcaa |
549 |
Q |
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| T |
42356645 |
aatctcttcaa |
42356655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 53 - 178
Target Start/End: Original strand, 42356161 - 42356291
Alignment:
| Q |
53 |
atttatttatagataccctagacggctagacttaaaatagatgtcaacaacgaataaattgaagtaaat---ataaatgcgataacagtcta--gtactc |
147 |
Q |
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||||| ||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||| |||||||| | | || |||| |||||| |
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| T |
42356161 |
atttacttatagataccctagacggctagacctaaaatacatgtcaacaaagaataaattgaagtaaatatgataaatgcaaaaccattctattgtactc |
42356260 |
T |
|
| Q |
148 |
caacttaaaaaccaacttcaaggcctaaaaa |
178 |
Q |
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||||||| ||| || |||||||||||||||| |
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| T |
42356261 |
caacttataaaacatcttcaaggcctaaaaa |
42356291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 273 - 434
Target Start/End: Original strand, 42356360 - 42356518
Alignment:
| Q |
273 |
attataaatcataaaaacacctgagaaaaattacagggaaatgtaccaagatctacaaaagaaaagcatagatt---aaattaatatgaggttgttgtga |
369 |
Q |
| |
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||||||||| || |||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||| |||||| ||||||| || |
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| T |
42356360 |
attataaataatcaaaacacctgagaaaaattacaggaaaatgtaccaagatatacaaaagcaaagcataaattatcaaattagtatgagggtg------ |
42356453 |
T |
|
| Q |
370 |
tgatgatattggaggttagatcctcaaccaagtaacggatcctacttctaacattattcctcctc |
434 |
Q |
| |
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| |||| ||||||||||||||||||||||||| | |||| |||||| ||||| |||||||||| |
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| T |
42356454 |
taatgacgttggaggttagatcctcaaccaagttatcgatcttacttccaacatcattcctcctc |
42356518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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