View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14556_low_5 (Length: 525)

Name: NF14556_low_5
Description: NF14556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14556_low_5
NF14556_low_5
[»] chr6 (1 HSPs)
chr6 (18-515)||(7561688-7562196)
[»] chr3 (4 HSPs)
chr3 (267-324)||(47536495-47536552)
chr3 (267-325)||(9598431-9598485)
chr3 (267-299)||(3582796-3582828)
chr3 (267-299)||(7738683-7738715)
[»] chr7 (3 HSPs)
chr7 (244-324)||(47155096-47155175)
chr7 (267-324)||(44406871-44406924)
chr7 (267-299)||(44454526-44454558)
[»] chr4 (2 HSPs)
chr4 (267-322)||(47806271-47806326)
chr4 (250-299)||(31352126-31352175)
[»] chr1 (3 HSPs)
chr1 (244-299)||(19396183-19396238)
chr1 (267-324)||(21341175-21341230)
chr1 (267-299)||(41763170-41763202)
[»] chr2 (3 HSPs)
chr2 (246-299)||(12231891-12231944)
chr2 (267-299)||(9842217-9842249)
chr2 (267-299)||(37413194-37413226)
[»] scaffold1160 (1 HSPs)
scaffold1160 (267-299)||(1727-1759)
[»] chr8 (1 HSPs)
chr8 (267-299)||(26799198-26799230)
[»] chr5 (1 HSPs)
chr5 (267-324)||(35270696-35270749)


Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 18 - 515
Target Start/End: Original strand, 7561688 - 7562196
Alignment:
Q  18 cctttgagaatgaggatttcgtccttc-agaatgaagagtctcttactcgagtttaatgtttgtttctttgtggaagaagatggttttaggggagtgacg 116  Q
    |||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |    
T  7561688 cctttgaggatgaggatttcgtccttccaaaatgaagagtctcttactcgagtttaatgtttgcttctttgaggaagaagatggttttaggggagtgatg 7561787  T
Q  117 attgtctcatgtt---ctagtttttaggatgaagaagaacttgttttctttgccattgaaagaaagaaacaaagaagaaattgaaaataattttaaccta 213  Q
    |||||||||||||   ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  7561788 attgtctcatgttgttctagtttttaggatgaacaagaacttgttttctttgccatcgaaagaaagaaacaaagaagaaattaaaaataattttaaccta 7561887  T
Q  214 aacctttgagtgataatga-----nnnnnnnnnnnggtgtccgggattcaaactttgtaccttgcatattttatgcattctccctaccaaccaactgaac 308  Q
    |||||| ||||||||||||                ||||| |||| ||| |||| |||| |||||||||||||||||||  | ||||||| |||||||||    
T  7561888 aaccttcgagtgataatgattttttttttttttgtggtgttcggggttcgaactctgta-cttgcatattttatgcattgcctctaccaatcaactgaac 7561986  T
Q  309 taagctcacaaggacaagtaataatgatttagcgaggagaaaaagtgtgtctcgtgatgaaattagggcaccaaattattgtattattatgaaatgaaat 408  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7561987 taagctcacaagaacaaataataatgatttagcgaggaggaaaagtgtgtctcgtgatgaaattaggtcaccaaattattgtattattatgaaatgaaat 7562086  T
Q  409 tataaaaaattggtaggaaattttcccg---ctaacacattcttttatgatttataataaaatattatggcgtaagttgactcatataatcgactacact 505  Q
    |||||||||| ||||||||||||| |||    ||| ||||||||| || ||||||||||||||||||||||||||||| |||||||||| |||| ||| |    
T  7562087 tataaaaaataggtaggaaattttgccgttaataaaacattctttaataatttataataaaatattatggcgtaagttaactcatataaccgaccacatt 7562186  T
Q  506 taatagaata 515  Q
    ||||| ||||    
T  7562187 taataaaata 7562196  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 324
Target Start/End: Original strand, 47536495 - 47536552
Alignment:
Q  267 accttgcatattttatgcattctccctaccaaccaactgaactaagctcacaaggaca 324  Q
    ||||||||||||||||||||| ||||||||||| |||| | |||||||||| ||||||    
T  47536495 accttgcatattttatgcattgtccctaccaactaactaagctaagctcacgaggaca 47536552  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 325
Target Start/End: Complemental strand, 9598485 - 9598431
Alignment:
Q  267 accttgcatattttatgcattctccctaccaaccaactgaactaagctcacaaggacaa 325  Q
    |||||||||||||||| |||| ||||    ||||||||||||||||||||| |||||||    
T  9598485 accttgcatattttatacattgtccc----aaccaactgaactaagctcacgaggacaa 9598431  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 299
Target Start/End: Complemental strand, 3582828 - 3582796
Alignment:
Q  267 accttgcatattttatgcattctccctaccaac 299  Q
    |||||||||||||||||||||||||| ||||||    
T  3582828 accttgcatattttatgcattctcccaaccaac 3582796  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 299
Target Start/End: Complemental strand, 7738715 - 7738683
Alignment:
Q  267 accttgcatattttatgcattctccctaccaac 299  Q
    ||||||||||||||||||||| |||||||||||    
T  7738715 accttgcatattttatgcattgtccctaccaac 7738683  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 324
Target Start/End: Original strand, 47155096 - 47155175
Alignment:
Q  244 ggtgtccgggattcaaactttgtaccttgcatattttatgcattctccctaccaaccaactgaactaagctcacaaggaca 324  Q
    |||||||||| ||| |||  || ||||||||||| ||||||||| |||||| | ||||||||| |||||||| ||||||||    
T  47155096 ggtgtccggggttcgaaccctggaccttgcatatattatgcattgtcccta-ctaccaactgagctaagctcgcaaggaca 47155175  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 324
Target Start/End: Original strand, 44406871 - 44406924
Alignment:
Q  267 accttgcatattttatgcattctccctaccaaccaactgaactaagctcacaaggaca 324  Q
    ||||||||||||||||||||| ||    |||||||||||| |||||||||||| ||||    
T  44406871 accttgcatattttatgcattgtc----ccaaccaactgagctaagctcacaaagaca 44406924  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 299
Target Start/End: Complemental strand, 44454558 - 44454526
Alignment:
Q  267 accttgcatattttatgcattctccctaccaac 299  Q
    ||||||||||||||||||||| |||||||||||    
T  44454558 accttgcatattttatgcattgtccctaccaac 44454526  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 47806271 - 47806326
Alignment:
Q  267 accttgcatattttatgcattctccctaccaaccaactgaactaagctcacaagga 322  Q
    ||||||||||| ||||||||| |||  |||||| ||||||||||||||||| ||||    
T  47806271 accttgcatatattatgcattgtcctcaccaactaactgaactaagctcacgagga 47806326  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 31352175 - 31352126
Alignment:
Q  250 cgggattcaaactttgtaccttgcatattttatgcattctccctaccaac 299  Q
    |||||||| ||| | ||||||||||||||||||||||| ||| |||||||    
T  31352175 cgggattcgaacctcgtaccttgcatattttatgcattgtccataccaac 31352126  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 299
Target Start/End: Original strand, 19396183 - 19396238
Alignment:
Q  244 ggtgtccgggattcaaactttgtaccttgcatattttatgcattctccctaccaac 299  Q
    |||||||||||||||||| |   ||||||||||| ||||||||| |||||||||||    
T  19396183 ggtgtccgggattcaaacatcaaaccttgcatatattatgcattatccctaccaac 19396238  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 324
Target Start/End: Complemental strand, 21341230 - 21341175
Alignment:
Q  267 accttgcatattttatgcattctccctaccaaccaactgaactaagctcacaaggaca 324  Q
    ||||||||||| ||||||||| |||||||  ||||||||| |||||||||| ||||||    
T  21341230 accttgcatatattatgcattgtccctac--accaactgagctaagctcacgaggaca 21341175  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 299
Target Start/End: Original strand, 41763170 - 41763202
Alignment:
Q  267 accttgcatattttatgcattctccctaccaac 299  Q
    ||||||||||||||||||||| |||||||||||    
T  41763170 accttgcatattttatgcattatccctaccaac 41763202  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 299
Target Start/End: Complemental strand, 12231944 - 12231891
Alignment:
Q  246 tgtccgggattcaaactttgtaccttgcatattttatgcattctccctaccaac 299  Q
    |||||||| |||||||| || ||||||||||| ||||||||| ||| |||||||    
T  12231944 tgtccggggttcaaactctggaccttgcatatattatgcattatccttaccaac 12231891  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 299
Target Start/End: Original strand, 9842217 - 9842249
Alignment:
Q  267 accttgcatattttatgcattctccctaccaac 299  Q
    ||||||||||||||||||||| |||||||||||    
T  9842217 accttgcatattttatgcattgtccctaccaac 9842249  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 299
Target Start/End: Original strand, 37413194 - 37413226
Alignment:
Q  267 accttgcatattttatgcattctccctaccaac 299  Q
    ||||||||||||||||||||| |||||||||||    
T  37413194 accttgcatattttatgcattgtccctaccaac 37413226  T

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Target: scaffold1160 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 299
Target Start/End: Original strand, 1727 - 1759
Alignment:
Q  267 accttgcatattttatgcattctccctaccaac 299  Q
    ||||||||||||||||||||| |||||||||||    
T  1727 accttgcatattttatgcattgtccctaccaac 1759  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 299
Target Start/End: Complemental strand, 26799230 - 26799198
Alignment:
Q  267 accttgcatattttatgcattctccctaccaac 299  Q
    ||||||||||||||||||||| |||||||||||    
T  26799230 accttgcatattttatgcattgtccctaccaac 26799198  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 324
Target Start/End: Original strand, 35270696 - 35270749
Alignment:
Q  267 accttgcatattttatgcattctccctaccaaccaactgaactaagctcacaaggaca 324  Q
    ||||||||||||||||||||| ||    |||||||||||| |||||||||| ||||||    
T  35270696 accttgcatattttatgcattgtc----ccaaccaactgagctaagctcacgaggaca 35270749  T

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