View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14556_low_8 (Length: 405)
Name: NF14556_low_8
Description: NF14556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14556_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 43410818 - 43411247
Alignment:
| Q |
1 |
tcatgtgatgctgatcttgaagaatgtaaagacttgcacacatcatctcacacacgtaccattagactctctctttttcaagcttcccctctcaatcttc |
100 |
Q |
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| T |
43410818 |
tcatgtgatgctgatcttgaagaatgtaaagacttgcacacatcatctcacacacgtaccattagactctctctttttcaagcttcccctctcaatcttc |
43410917 |
T |
|
| Q |
101 |
caaacactttccgcaacagcagcagcagcagtccatcctcctagctagct----tacaacttct---catctgaatgtgttgtgtc------------tg |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| || |
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| T |
43410918 |
caaacactttccgcaacagcagcagcagcagtccatcctcctagctagctagcttacaacttctgatcatctgaatgtgttgtgtctgtctgtctgtctg |
43411017 |
T |
|
| Q |
182 |
tctgtatattgtatagcatccaaattcccaagcaaacataacatcaatgttagctcatatacctttactgcttttcatttaattactcgttaagttagat |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43411018 |
tctgtatattgtatagcatccaaattcccaagcaaacataacatcaatgttagctcatatacctttactgcttttcatttaattactcgttaagttagat |
43411117 |
T |
|
| Q |
282 |
tctgcggctttattttgttaattacacatcatattgtttaattagagttttagttaacaaagcatcataccaaa-----------catgtagtcttcgtg |
370 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
43411118 |
tctgcggctttattttgttaattacacatcttgttgtttaattagagttttagttaacaaagcatcataccaaactgttacttctcatgtagtctttgtg |
43411217 |
T |
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| Q |
371 |
attacataaactattttgttcatctcactc |
400 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
43411218 |
attacataaactattttgttcatctcactc |
43411247 |
T |
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