View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14556_low_9 (Length: 400)
Name: NF14556_low_9
Description: NF14556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14556_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 385
Target Start/End: Complemental strand, 39828223 - 39827859
Alignment:
| Q |
20 |
cagggtttgttgaaaaggagtcttgcatttgaattaagaaaataatatatggtatgcaacaacgtggacaaaatgtgtcaataatatccaacgaattttg |
119 |
Q |
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| T |
39828223 |
cagggtttgttgaaaagtagtcttgcatttgaattaagaaaataatatatggtaggcaacaacgtggacaaaatgtgtcaataatatccaacgaattttg |
39828124 |
T |
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| Q |
120 |
gactccatccatcctctcacatacaagattttgaatattttataagtgagatgatgcataaacctaatgtcttaagattttaagtaaaaaatctggcgtc |
219 |
Q |
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| T |
39828123 |
gactccatccatcctctcacatacaagattttgaatattttataagttagatgatgcataaatttaatatcttaagattttaagtaaaaagtctggcgtc |
39828024 |
T |
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| Q |
220 |
tctctcacttatgtgattgttcttacctaatgtgggtgatccttcagattcccctcacggcccaacaatttgatatgatgtttgagnnnnnnnnnccagc |
319 |
Q |
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| T |
39828023 |
tctctcagttatgtaattattcttacctaatgtgggtgatccttcagactcccctcacaatccaacaatttgatatgatgtttgag-ttttttttccagc |
39827925 |
T |
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| Q |
320 |
agcgctatttatcccgatggaaattgtcccgaaagaactgcgaaaaacaattaccaataatctgtg |
385 |
Q |
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| T |
39827924 |
agtgctatttatcccgatggaaattgtctcgaaaggactgcgaaaaacaattaccaataatctgtg |
39827859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 2891932 - 2891883
Alignment:
| Q |
151 |
tgaatattttataagtgagatgatgcataaacctaatgtcttaagatttt |
200 |
Q |
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| T |
2891932 |
tgaatactttataagtaagaggatccataaacctaatgtcttaaggtttt |
2891883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 241
Target Start/End: Original strand, 39003586 - 39003676
Alignment:
| Q |
150 |
ttgaatattttataagtgagatgatgcataaacctaatgtcttaagattttaagtaaaaaatctggcgtctctctcacttatgtgattgttc |
241 |
Q |
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| T |
39003586 |
ttgaacattatataagtgagatgacccaataacctaatgtcttaagattttgagt-taaaatgtggtgtttctctcacttatatgattgttc |
39003676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 150 - 241
Target Start/End: Original strand, 18091085 - 18091176
Alignment:
| Q |
150 |
ttgaatattttataagtgagatgatgcataaacctaatgtcttaagattttaagtaaaaaatctggcgtctctctcacttatgtgattgttc |
241 |
Q |
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| T |
18091085 |
ttgaatattttatatgtgagatgacctataaacctaatatcttaaggtttttatattaaaatgtggtgtttctctcacttatatgattgttc |
18091176 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 9217647 - 9217695
Alignment:
| Q |
160 |
tataagtgagatgatgcataaacctaatgtcttaagattttaagtaaaa |
208 |
Q |
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| T |
9217647 |
tatacgtgagatgatccataaatctaatgtcttaagattttgagtaaaa |
9217695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 150 - 241
Target Start/End: Original strand, 11400661 - 11400751
Alignment:
| Q |
150 |
ttgaatattttataagtgagatgatgcataaacctaatgtcttaagattttaagtaaaaaatctggcgtctctctcacttatgtgattgttc |
241 |
Q |
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| T |
11400661 |
ttgaacattttataagtgagatgacatataaacttaatgtcttaaggttttgagt-taaagtgcggcatctctctcacttatatgattgttc |
11400751 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 12421773 - 12421716
Alignment:
| Q |
150 |
ttgaatattttataagtgagatgatgcataaacctaatgtcttaagattttaagtaaa |
207 |
Q |
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| T |
12421773 |
ttgaatattttataactgagatgattcataaactcaatattttaagattttaaataaa |
12421716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 8904539 - 8904608
Alignment:
| Q |
217 |
gtctctctcacttatgtgattgttcttacctaatgtgggtgatccttcagattcccctcacggcccaaca |
286 |
Q |
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| T |
8904539 |
gtctctctcacttatgctattgctcttgcctaatgtggatggtccctcagactcccctcgcgacccaaca |
8904608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 352
Target Start/End: Complemental strand, 34430761 - 34430725
Alignment:
| Q |
316 |
cagcagcgctatttatcccgatggaaattgtcccgaa |
352 |
Q |
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| T |
34430761 |
cagcagtgctatttatcccgacggaaattgtcccgaa |
34430725 |
T |
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