View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14557_high_21 (Length: 220)
Name: NF14557_high_21
Description: NF14557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14557_high_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 14 - 201
Target Start/End: Complemental strand, 54086154 - 54085967
Alignment:
| Q |
14 |
attattctccaattctcaaactccccaatttcaccctaatcaccccggatcagatcaaaacgtgagtttccgtttctccattgnnnnnnnnnnnnnnnnn |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54086154 |
attattctccaattctcaaactccccaatttcaccctaatcaccccggatcagatcaaaacgtgagtttccgtttctccattgctatctctctctctctc |
54086055 |
T |
|
| Q |
114 |
nnnnnnnattcaccaatcctaatccaattatcaattttatccttaaaccttttcaatttcaatttccctctctcaattacgcggaata |
201 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54086054 |
tctctctattcaccaatcctaatccaattatcaattctatccttaaaccttttcaatttcaatttccctctctcaattacgcggaata |
54085967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University