View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14557_high_3 (Length: 469)
Name: NF14557_high_3
Description: NF14557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14557_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 12 - 423
Target Start/End: Original strand, 31937176 - 31937589
Alignment:
| Q |
12 |
agtagcaaaggtggtggtgccatgaatcctcggtttgctgggaaccaaaatgagtatgctaggtcaaatgattcaatggtacgtaa-catgtcatatact |
110 |
Q |
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| T |
31937176 |
agtaacaaaggtggtggtgccatgaatcctcggtttgctgggaaccaaaatgagtatgctaggtcaaatgattcaatggtacgtaaacatgtcatatact |
31937275 |
T |
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| Q |
111 |
atgttgtacatgtttattggtagcatgtatgtttcaaaaatcacgtttgatannnnnnnnn-aaagtgcaacttgtgaaaacacaggtggataatgaaaa |
209 |
Q |
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| T |
31937276 |
atgttgtacatgtttattgttagcatgtatgtttcaaaaatcacgtttgatactttttttttaaagtgcaacttgtgaaaacacaggtggataatgaaaa |
31937375 |
T |
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| Q |
210 |
ccctggagttataaatagtgtacctggtggcatgggagcatccatggcaactgcgactgcagatcgagttaagaaaaacaaatgaagtgcactttgaagt |
309 |
Q |
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| T |
31937376 |
ccctggagttataaatagtgtacctggtggcatgggagcatccatggcaactgcgactgcagatcgagttaagaaaaacaaatgaagtgcactttgaagt |
31937475 |
T |
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| Q |
310 |
ttgagttccaatgttccaatttgtttttcagcagtgttttattttaccnnnnnnnggctgtgtattattatgacttaaagttcatcgtatagctctaata |
409 |
Q |
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| T |
31937476 |
ttgagttccaatgttccaatttgtttttcagcagtgttttattttacctttttttggctgtgtattattatgacttaaagttaatcgtatagctctaata |
31937575 |
T |
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| Q |
410 |
tcataattcctaaa |
423 |
Q |
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| T |
31937576 |
tcataattcctaaa |
31937589 |
T |
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