View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14557_high_4 (Length: 406)
Name: NF14557_high_4
Description: NF14557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14557_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 21404739 - 21404518
Alignment:
| Q |
12 |
aagaatatcactgtgtgttggaacaatttttgcttttccattattcagttgggaacatggcccatgtttgtgtaacacttctaatgatgcttttgttttg |
111 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21404739 |
aagaatatcactgtgtgctggaataatttttgcttttccattattcacttgggaacatggcccatgtttgtgtaacacttctaatgatgcttttgttttg |
21404640 |
T |
|
| Q |
112 |
gtacctgaatttgaacaatgaaacatgcttagtggtgtcaaattattgttgcttaactactacgttaaaatcaataatacaagtctattcatcaaggtaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21404639 |
gtacctgaatttgaacaatgaaacatgcttagtggtgtcaaattattgttgcttaactactacgttaaaatcaataatacaagtctattcatcaaggtaa |
21404540 |
T |
|
| Q |
212 |
tgtcatatattgcataatacac |
233 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
21404539 |
tgtcatatattgcataatacac |
21404518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 280 - 390
Target Start/End: Complemental strand, 21404403 - 21404293
Alignment:
| Q |
280 |
aaatgttaaagacttgctaaagttagatatcaatatttacattttatctgtctcaaatttttgttggtaattcaacctttttagaagtaactcaaaagtt |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21404403 |
aaatgttaaagacttgctaaagttagatatcaatatttacattttatctgtctcaaatttttgttggtaattcaacctttttagaagtaactcaaaagtt |
21404304 |
T |
|
| Q |
380 |
gccctagaaaa |
390 |
Q |
| |
|
||||||||||| |
|
|
| T |
21404303 |
gccctagaaaa |
21404293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 21378335 - 21378223
Alignment:
| Q |
13 |
agaatatcactgtgtgttggaacaatttttgcttttccatt---attcagttgggaacatggcccatgtttgtgtaacacttctaatgatgcttttgttt |
109 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| ||||| ||||||||||||||| |||||||| ||| ||| ||| ||||||||||||||| ||| |
|
|
| T |
21378335 |
agaatatcactgtgtgttggaagaatacttgctttgccattgttattcagttgggaacaaggcccatgcttgggtaccacatctaatgatgcttttcttt |
21378236 |
T |
|
| Q |
110 |
tggtacctgaatt |
122 |
Q |
| |
|
| | ||||||||| |
|
|
| T |
21378235 |
ttggacctgaatt |
21378223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 16225176 - 16225283
Alignment:
| Q |
12 |
aagaatatcactgtgtgttggaacaatttttgcttttccatt---------attcagttgggaacatggcccatgtttgtgtaacacttctaatgatgct |
102 |
Q |
| |
|
||||| |||||| |||||||||| ||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
16225176 |
aagaacatcactatgtgttggaagaatatttgcttttccattgttattcttattcagttgggaacatggcccatgcttgtgtaccacatctaatgatgct |
16225275 |
T |
|
| Q |
103 |
tttgtttt |
110 |
Q |
| |
|
||| |||| |
|
|
| T |
16225276 |
tttctttt |
16225283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 26171500 - 26171393
Alignment:
| Q |
12 |
aagaatatcactgtgtgttggaacaatttttgcttttccatt---------attcagttgggaacatggcccatgtttgtgtaacacttctaatgatgct |
102 |
Q |
| |
|
|||||||||||||| |||||||| ||| |||||||| ||||| |||||||||||||||||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
26171500 |
aagaatatcactgtctgttggaagaatatttgctttgccattgtttttcttattcagttgggaacatggcccatgcttgtgtaccacatctaatgatgct |
26171401 |
T |
|
| Q |
103 |
tttgtttt |
110 |
Q |
| |
|
||| |||| |
|
|
| T |
26171400 |
tttctttt |
26171393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University