View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14557_high_5 (Length: 405)
Name: NF14557_high_5
Description: NF14557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14557_high_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 5 - 405
Target Start/End: Complemental strand, 2036737 - 2036340
Alignment:
| Q |
5 |
taatatcttgaactacattgcctgtttaaattaatttgtaactactgatttggtgatattgtccattacacagaagaaagaaggttctaagaagagaaag |
104 |
Q |
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| T |
2036737 |
taatatcttgaactacattgcctgtttaaattaatttgtaactactgatttggtgatattgtccattacacagaagaaagaaggttctaagaagagaaag |
2036638 |
T |
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| Q |
105 |
accaatgtagcttcagaagatgatgtctccttgcaagttttcacaaccaaagaggatactaagaagacagagttagctaaagattcttcaacatcaacaa |
204 |
Q |
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| T |
2036637 |
accaatgtagcttcagaagatgatgtctccttgcaagtttggacaatcaaagaggatgcaaagaa---agagttagctaaagattcttcaacatcaacaa |
2036541 |
T |
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| Q |
205 |
tgacaaagaaagagtccctgcaagtgcagccttctgtggaacattccctgctttcaatgcaggacactctcaactctccaaatacaggtacttttcattt |
304 |
Q |
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| T |
2036540 |
tgacaaagaaagagtccctgcaagtgcagccttctgtggaaaattccctgctttcaatgcaggacacactaaactctccaaatacaggtacttttcattt |
2036441 |
T |
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| Q |
305 |
attggatataattggtatgcactatcggcgtaaagaagttttacacatgcattcaatcacatcacatctcattattgtatcacttttctatgttagttcg |
404 |
Q |
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| T |
2036440 |
attggatataattggtatgcactatcggcataaagaagttttacacatgcattcaatcacatcacatctcatcattatatcacttttctatgttagttcg |
2036341 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 40170785 - 40170838
Alignment:
| Q |
313 |
taattggtatgcactatcggcgtaaagaagttttacacatgcattcaatcacat |
366 |
Q |
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| T |
40170785 |
taattgatatgcattatcggcctataaaagttttacacatgcattcagtcacat |
40170838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 16744765 - 16744818
Alignment:
| Q |
313 |
taattggtatgcactatcggcgtaaagaagttttacacatgcattcaatcacat |
366 |
Q |
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| T |
16744765 |
taattggtatgcactgtcggtgtaaaaacgttttactcatgcatccaatcacat |
16744818 |
T |
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