View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14557_low_1 (Length: 587)
Name: NF14557_low_1
Description: NF14557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14557_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 3e-96; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 22 - 211
Target Start/End: Original strand, 40642898 - 40643088
Alignment:
| Q |
22 |
aattagtctcttgttagtgcttgcatttatgcgttgggatattttgattt-aaaagaacatgaaaaagatatataccttgtgaaataatggatgaagaac |
120 |
Q |
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| T |
40642898 |
aattagtctcttgttagtgcttgcatttatgcgtggggatattttgattttaaaagaacatgaaaaagatatataccttgtgaaataatggatgaagaac |
40642997 |
T |
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| Q |
121 |
cttcttcaatcggaaccttaaaaggagaagatgccaaactggatgaaatattgacaaatgagttgcaatttccgcccacatgataaagctc |
211 |
Q |
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| T |
40642998 |
cttcttcaatcggaaccttaaaaggagaagatgccaaactggatgaaatattgacaaatgagttgcaatttccgcccacatgataaagctc |
40643088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 276 - 442
Target Start/End: Original strand, 40643153 - 40643317
Alignment:
| Q |
276 |
cacatctaaaagttttatttcccaatgaaac-----aaaacaactgtacttttattcgaaagtacacatctaaaagttata-tacatcagaagtaattta |
369 |
Q |
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| T |
40643153 |
cacatctaaaagttttatttcccaatgaaacaaaacaaaacaactgtacttttattcgaaagtacacatctaaaagttatactacatcagaag-----ta |
40643247 |
T |
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| Q |
370 |
attttaaggtgggaaaagtccacgaccccttagaattttacggtaacccaaaatttgacttgcttaagtgtta |
442 |
Q |
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| T |
40643248 |
attttaaggtgggaaaagtcc---accccttagaattttacggtaacctaaaatttgacttgcttaagtgtta |
40643317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 441 - 570
Target Start/End: Original strand, 40643599 - 40643727
Alignment:
| Q |
441 |
taggcaagaaggactactgaaagcagaggaagtcctaaggacataacactccattatttctataaagcataatcaatctttggcgaatttgatacctaac |
540 |
Q |
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| T |
40643599 |
taggcaagaaggactactgaaagcagaggaagtactaaggacataacactccattatttctataaagcat-ataaatctttggcgaatttgatacctaac |
40643697 |
T |
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| Q |
541 |
aaagtagccataataggagggcttacatct |
570 |
Q |
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| T |
40643698 |
aaagcagccataataggagggcttatatct |
40643727 |
T |
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