View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14557_low_10 (Length: 316)
Name: NF14557_low_10
Description: NF14557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14557_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 9651966 - 9651675
Alignment:
| Q |
13 |
caaaggcaaaatagttggcgggaagaagacaagaactcagacaatatgaaagtttctttcaaaacccagttcatgtcatgatagttcttccccaagtgca |
112 |
Q |
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| T |
9651966 |
caaaggcaaaatagtcggcgggaagaagacaagaactcagacaatatgaaagtttctttcaaaacccagttcatgtcatgatagttcttccccaagtgca |
9651867 |
T |
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| Q |
113 |
tctagaaggtacttaaagaatgcattaacgggcgcttgattcaaggttcagaatgatctaatttgttat---taggacagaag----nnnnnnnnntatt |
205 |
Q |
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| T |
9651866 |
tctagaaggtacttaaagaatgcattaacgggcgcttgattcaaggttcagaatgatgtaatttgttattactaggacagaaggaaaaaataataacatt |
9651767 |
T |
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| Q |
206 |
gaagccagatatgacataactaaagcaacatggacatggaggaagggaaatattctattcataccttaagcaatctgagatcatgaacagat |
297 |
Q |
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| T |
9651766 |
gaagccaaatctgacataactaaagcaccatggagatggcggaagggaaatattctattcatacctgaagcgatctgagatcatgaacagat |
9651675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 34735481 - 34735550
Alignment:
| Q |
51 |
agacaatatgaaagtttctttcaaaacccagttcatgtcatgatagttcttccccaagtgcatctagaag |
120 |
Q |
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| T |
34735481 |
agacaatatgaaagtttcttttaaaatctagttcatgtcatgatagttcttcaccaagtgcgtctagaag |
34735550 |
T |
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