View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14557_low_11 (Length: 309)
Name: NF14557_low_11
Description: NF14557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14557_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 116055 - 116335
Alignment:
| Q |
10 |
agcagcaacaacaaaagaatcatggtaggaatcgatctaaacaacgtcaagatcttgatgcatcaattgccaaattttctttgaagaataagggaagaag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
116055 |
agcagcaacaacaaaagaatcatggtaggaatcgatctaaacaacgtcaagatcttgatgcatcaattgccaaattttctttgaagaataagggaagaag |
116154 |
T |
|
| Q |
110 |
gatagatagtgtgatctgattgtgagattcatatattccaaatataaatagtatatctatttcacatagcagaactaatgtcccaagtatgtttggtgga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
116155 |
gatagatagtgtgatctgattgtgagattcatatattccaaatataaatagtatatctatttcacatagcagaactaatgtcccaagtatgtttggtgga |
116254 |
T |
|
| Q |
210 |
gtggatcttgtagaagaaagtatattcaaaatggctactatatccatagtgacaacattttttgtgttgccaggtattgac |
290 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
116255 |
gtggatcttgtagaagaaagtatattcaaaatggctactatatccatagtgacaacattttttgtgttgccaggtattgac |
116335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University