View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14557_low_16 (Length: 261)
Name: NF14557_low_16
Description: NF14557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14557_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 29 - 239
Target Start/End: Original strand, 13945111 - 13945321
Alignment:
| Q |
29 |
gaagcaaaggggaccacacgaagattcgttgaaccaagaaggaaactctctttaaacctaaatttgagggaggtttaagtttcaaaaacttaaggatgtt |
128 |
Q |
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| T |
13945111 |
gaagcaaaggggatcacaggaagattcattgaaccaagaaggaaactctctttaaacctaaatttgagggaggtttaggtttcaaaaacttaaggatgtt |
13945210 |
T |
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| Q |
129 |
caacgaagcaatgctagcaaaataagtttggagactccatgttaatacataatctcttattagtcaagtatataaggcgaactaatatccaacaactgat |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13945211 |
caacgaagcaatgctagcaaaataagtttggagactccatgttaatacataatctcttattagtcaagtatataaggcgaactaatatccaacaactgat |
13945310 |
T |
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| Q |
229 |
gtcattcatag |
239 |
Q |
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||||||||||| |
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| T |
13945311 |
gtcattcatag |
13945321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 29 - 239
Target Start/End: Original strand, 14086300 - 14086510
Alignment:
| Q |
29 |
gaagcaaaggggaccacacgaagattcgttgaaccaagaaggaaactctctttaaacctaaatttgagggaggtttaagtttcaaaaacttaaggatgtt |
128 |
Q |
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||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14086300 |
gaagcaaaggggatcacaggaagattcattgaaccaagaaggaaactctctttaaacctaaatttgagggaggtttaggtttcaaaaacttaaggatgtt |
14086399 |
T |
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| Q |
129 |
caacgaagcaatgctagcaaaataagtttggagactccatgttaatacataatctcttattagtcaagtatataaggcgaactaatatccaacaactgat |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14086400 |
caacgaagcaatgctagcaaaataagtttggagactccatgttaatacataatctcttattagtcaagtatataaggcgaactaatatccaacaactgat |
14086499 |
T |
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| Q |
229 |
gtcattcatag |
239 |
Q |
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||||||||||| |
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| T |
14086500 |
gtcattcatag |
14086510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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