View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14557_low_17 (Length: 247)
Name: NF14557_low_17
Description: NF14557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14557_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 76 - 189
Target Start/End: Complemental strand, 44770282 - 44770169
Alignment:
| Q |
76 |
tgttaagtgttcaagtaggtgaattgtggatatgtagagtatcagtgagcctaaaagattaaatagaggcagctaactaggaagaaatatcatgaatcaa |
175 |
Q |
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| T |
44770282 |
tgttaagtgttcaagtaggtgaattgtggatatgtagagtatcactgagcctaaaagattaaatagaggcagctagctaggaagaaatatcatgaatcaa |
44770183 |
T |
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| Q |
176 |
acccagtaaattgg |
189 |
Q |
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| T |
44770182 |
acccagtaaattgg |
44770169 |
T |
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Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 36584382 - 36584476
Alignment:
| Q |
76 |
tgttaagtgttcaagtaggtgaattgtggatatgtagagtatcagtgagcctaaaagattaaatagaggcagctaactaggaagaaatatcatgaa |
171 |
Q |
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| T |
36584382 |
tgttaagtgttcaagtaggtgaattgtggatatgtagagtatcggtgagcctaaaagattaaatagagg-agctagctaggaagaaatatcatgaa |
36584476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 36584309 - 36584348
Alignment:
| Q |
18 |
ttttatatgtgtgatttattgatgaattgatgtttgtgag |
57 |
Q |
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| T |
36584309 |
ttttatatgtgtgatttattgatgaattgatgtttgtgag |
36584348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 36584476 - 36584523
Alignment:
| Q |
142 |
aggcagctaactaggaagaaatatcatgaatcaaacccagtaaattgg |
189 |
Q |
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| T |
36584476 |
aggcagctggctaggaagaaatatcatgaatcaaacccagtaaattgg |
36584523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 125
Target Start/End: Original strand, 30946424 - 30946471
Alignment:
| Q |
78 |
ttaagtgttcaagtaggtgaattgtggatatgtagagtatcagtgagc |
125 |
Q |
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||||||||| ||| |||||||||| ||||||||||||| ||||||||| |
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| T |
30946424 |
ttaagtgttaaaggaggtgaattggggatatgtagagtttcagtgagc |
30946471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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