View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14557_low_18 (Length: 240)
Name: NF14557_low_18
Description: NF14557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14557_low_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 4 - 195
Target Start/End: Original strand, 4833950 - 4834138
Alignment:
| Q |
4 |
agggctcgtgcacattgagttaacattattaaaacttcatggagtacttagtaatatcctatcattcttttctcatttttggaaattgatggtaatttaa |
103 |
Q |
| |
|
||||||| || ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4833950 |
agggctcatgtacattgagttaacatta---aaacttcatggagtacttactaatatcctatcattcttttctcatttttggaaattgatggtaatttaa |
4834046 |
T |
|
| Q |
104 |
aaacttgttggattaatgttctatcaataagattggagattagacaacaaagttagtgcaggcctttcttttttcatgtaccaatttcccaa |
195 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4834047 |
aaacttgttggatttatgttctatcaataagattggagattagacaacaaagttagtgcaggcctttcttttttcatgtaccaatttcccaa |
4834138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 4834221 - 4834267
Alignment:
| Q |
194 |
aacagctaatcagtattgacttgcagtacattcaataaaattcaaaa |
240 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4834221 |
aacagctaatcagtattgaattgcagtacattcaataaaattcaaaa |
4834267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 149 - 183
Target Start/End: Original strand, 4831777 - 4831811
Alignment:
| Q |
149 |
aacaaagttagtgcaggcctttcttttttcatgta |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
4831777 |
aacaaagttagtgcaggcctttcttttttcatgta |
4831811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 4831667 - 4831703
Alignment:
| Q |
31 |
attaaaacttcatggagtacttagtaatatcctatca |
67 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4831667 |
attaaaatttcatggagtacttagtaatatcctatca |
4831703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University