View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14557_low_2 (Length: 494)
Name: NF14557_low_2
Description: NF14557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14557_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 13 - 488
Target Start/End: Original strand, 6462579 - 6463055
Alignment:
| Q |
13 |
aaaatgttggtaggaaagaaccagaagatgataagaaatattattttgtgaataaaacggaagaaaataagaaatgcgataatgggtttgaggatgataa |
112 |
Q |
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| T |
6462579 |
aaaatgttggtaggaaagaaccagaagatgataagaaatattattttgtgaataaaacggaagaaaataagaaatgcgataatgggtttgaggatgataa |
6462678 |
T |
|
| Q |
113 |
attgtgagaagaaacttaggttaaggaaactatgaatgtaaagaagagagagaaattgttgaagctaagaaatccgaattagaagtcatggaagaaaaga |
212 |
Q |
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| T |
6462679 |
attgtgagaagaaacttaggttaaggaaactatgaatgtaaagaagagagagaaattattgaagctaagaaatccgaattagaagtcatggaagaagaga |
6462778 |
T |
|
| Q |
213 |
gtaaccctcaagacatagatcgggacaatgaaaaggagaaaaatcaagagaggacggattatcatgttaaggttaatgataagtcaaacgatgaagataa |
312 |
Q |
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| T |
6462779 |
gtatccctcaaaacatagatcgggacaatgaaaaggagaaaaatcaagagagggcggattatcaggttaaggttaatgataagtcaaatgatgaagataa |
6462878 |
T |
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| Q |
313 |
ggtacaagacaacttgttc-nnnnnnnnnnnnnnnnnnnnncggtgcgtccaagatgcaagttgaattgagtataatgatttcaaattatttgaaataaa |
411 |
Q |
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| T |
6462879 |
ggtacaagacaacttgttcaacaaaaaaaaatagttaaaaacggtgcgtccaaggtgcaagttgaattgagtataatgatttcaaattatttgaaataaa |
6462978 |
T |
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| Q |
412 |
tgatgatccatggaaaataactcactcgatgtgcaaaagagacaattannnnnnngttaatgagcgtatctcctatg |
488 |
Q |
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| T |
6462979 |
tgatgatacatggaaaataactcactcgatgtgcaaaagagacaattatttttttgttaatgagcgtatctcctatg |
6463055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 261
Target Start/End: Original strand, 42252346 - 42252436
Alignment:
| Q |
171 |
ttgaagctaagaaatccgaattagaagtcatggaagaaaagagtaaccctcaagacatagatcgggacaatgaaaaggagaaaaatcaaga |
261 |
Q |
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| T |
42252346 |
ttgaagctaagaaacccgaattagaagtcatggaagaagagattatccctgaagacaacgatgagggcagtgaaaaggagaaaagtcaaga |
42252436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 41847894 - 41847959
Alignment:
| Q |
150 |
gtaaagaagagagagaaattgttgaagctaagaaatccgaattagaagtcatggaagaaaagagta |
215 |
Q |
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| T |
41847894 |
gtaaagaagagagagaaagcgttgaagctaagaagcctgaattagatgccatggatgaagagagta |
41847959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 42252239 - 42252292
Alignment:
| Q |
55 |
attttgtgaataaaacggaagaaaataagaaatgcgataatgggtttgaggatg |
108 |
Q |
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||||||||||| |||| ||||||||||||||| ||| ||||||||||||||| |
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| T |
42252239 |
attttgtgaatgaaacagaagaaaataagaaaaatgatcatgggtttgaggatg |
42252292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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