View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14557_low_21 (Length: 238)
Name: NF14557_low_21
Description: NF14557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14557_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 53941374 - 53941592
Alignment:
| Q |
15 |
agacattaggaggagcacattcgaaacacatgtaatatatcataattgcgagcctttcatttttccagttcttgaaaccccctcctccaacattactata |
114 |
Q |
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| T |
53941374 |
agacattaggaggagcacattccaaacacatgtaatatatcataattgcgagcctttcttttttccagttcttgaaaccccctcctccaacattactata |
53941473 |
T |
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| Q |
115 |
aaattaacgatgttgctggcttgattaaca-------------atatgtggttattaaatattcagatggatatgttacaacacctgccacttggtgcgt |
201 |
Q |
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| T |
53941474 |
aaattaatgatgttgctggcttgattaacaatatgtgggatatatatgtggttattaaatattcagatggatatgttacaacacctgccacttggtgtgt |
53941573 |
T |
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| Q |
202 |
cgaaaactttccgaattat |
220 |
Q |
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||||||||||||||||||| |
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| T |
53941574 |
cgaaaactttccgaattat |
53941592 |
T |
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