View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14557_low_22 (Length: 230)
Name: NF14557_low_22
Description: NF14557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14557_low_22 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 24419252 - 24419459
Alignment:
| Q |
18 |
tgatttgatttgtgagacttgtaatattttgttctggttctaagggtagaattcagattgcatgcctctcttgattgaatgatctaaatgctataatctc |
117 |
Q |
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| T |
24419252 |
tgatttgatttgtgagacttgtaatattttgttctggttctaagggtagaattcagattacatgcctctctt-attgaatgatctaaatgctataatttc |
24419350 |
T |
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| Q |
118 |
atttatttatttattttaactaaagtggtaaaatgaagatacactgcataataatgatgctggctgttgtggaaaatacgttaggaaattgtgtaatgca |
217 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24419351 |
attt----atttattttaactaaagtggtaaaatgaagatacactgcataataatgatgctggctgttgtggaaaatacgttaggaaattgtgtaatgca |
24419446 |
T |
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| Q |
218 |
atttgatctcgtc |
230 |
Q |
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||||||||||||| |
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| T |
24419447 |
atttgatctcgtc |
24419459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 24473199 - 24472995
Alignment:
| Q |
18 |
tgatttgatttgtgagacttgtaatattttgttctggttctaagggtagaattcagattgcatgcctctcttgattgaatgatctaaatgctataatctc |
117 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| ||| | |||| ||||||||||||||||||||||||||||||||| ||| || |
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| T |
24473199 |
tgatttgatttgtgagacttgtaatattttgttctagttctaagggtataatgctgattacatgcctctcttgattgaatgatctaaatgctaaaatttc |
24473100 |
T |
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| Q |
118 |
atttatttatttattttaactaaagtggtaaaatgaagatacactgcataataatgatgctggctgttgtggaaaatacgttaggaaattgtgtaatgca |
217 |
Q |
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|||||||| | | ||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24473099 |
atttatttttct----taattgaagtggtaaaatgaagatacactgcataata----tgctggctgttgtggaaaatacgttaggaaattgtgtaatgca |
24473008 |
T |
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| Q |
218 |
atttgatctcgtc |
230 |
Q |
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||||||||||||| |
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| T |
24473007 |
atttgatctcgtc |
24472995 |
T |
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