View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14557_low_6 (Length: 402)
Name: NF14557_low_6
Description: NF14557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14557_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 82 - 386
Target Start/End: Complemental strand, 34926946 - 34926640
Alignment:
| Q |
82 |
tgataccagtactatattagttgtagtagtaccattaatattatcaactctctttcaataaatatcagtaaagtactcattataattttgacgaccaaaa |
181 |
Q |
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||||||||||||||||||||| | |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34926946 |
tgataccagtactatattagtagcagtagtactattaatattatcaactct--ttcaataaatatcagtaaagtactcattataattttgatgaccaaaa |
34926849 |
T |
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| Q |
182 |
ttgtgtttgattctctaaaaatacttgtgggaatttgnnnnnnn----attaacagtgtcatcttaattaatcaaactcaatatccaatgtggtcttttt |
277 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34926848 |
ttgtgtttgattctctaaaaatacttgtgggaatttgttttttttattattaatagtgtcatcttaattaatcaaactcaatatccaatgtggtcttttt |
34926749 |
T |
|
| Q |
278 |
tgtgtggaagagatgaacaaaacacaagaccaaaatgaaggaaacacaagaccttaatttgaacgcctgtcattaactctccatatttaaaactcggagc |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34926748 |
tgtgtggaagagatgaacaaaacacaagaccaaaatgaaggaaacacaagaccttaatttgaacgcctgtcattaactctccatatttaaaactcggagc |
34926649 |
T |
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| Q |
378 |
ctggaattg |
386 |
Q |
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||||||||| |
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| T |
34926648 |
ctggaattg |
34926640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 34927067 - 34926992
Alignment:
| Q |
7 |
tataattctccaaattgtagaaatgaag---gacataaatgaagaagattttgacctattgtgattgataatgtca |
79 |
Q |
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| T |
34927067 |
tataactctccaaattgtaaaaatgaagaaggacataaatgaagaagattttgacccattgtgattgataatgtca |
34926992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 6014161 - 6014112
Alignment:
| Q |
13 |
tctccaaattgtagaaat---gaaggacataaatgaagaagattttgacc |
59 |
Q |
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| T |
6014161 |
tctccaaatggtagaaataaagaaggacataaatgaagaagattttgacc |
6014112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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