View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14557_low_7 (Length: 388)

Name: NF14557_low_7
Description: NF14557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14557_low_7
NF14557_low_7
[»] chr7 (12 HSPs)
chr7 (14-370)||(37580439-37580795)
chr7 (97-307)||(37525818-37526028)
chr7 (97-307)||(37535207-37535416)
chr7 (74-308)||(37564211-37564449)
chr7 (120-307)||(37540359-37540546)
chr7 (97-232)||(37466650-37466785)
chr7 (123-232)||(37476439-37476548)
chr7 (123-232)||(37480961-37481070)
chr7 (123-310)||(6778370-6778557)
chr7 (123-217)||(6774083-6774177)
chr7 (341-370)||(37466497-37466526)
chr7 (123-223)||(37557372-37557472)
[»] chr8 (1 HSPs)
chr8 (123-232)||(37363091-37363200)
[»] chr4 (2 HSPs)
chr4 (128-306)||(55118630-55118811)
chr4 (122-230)||(11160509-11160617)
[»] chr3 (1 HSPs)
chr3 (123-227)||(50914902-50915006)
[»] chr5 (1 HSPs)
chr5 (128-301)||(8991311-8991484)


Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 14 - 370
Target Start/End: Original strand, 37580439 - 37580795
Alignment:
Q  14 aatatgtatacaaaaacgcctatgaacaagagaaataccattgaaaggttagggttaacaatttcacacctttccgaaaatctcaatcaacatgtcttcg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  37580439 aatatgtatacaaaaacgcctatgaacaagagaaataccattgaaaggttagggttaacgatttcacacctttccgaaaatctcaatcaacatgtcttca 37580538  T
Q  114 gcaacaaagaagatgatcactctgaagagttacgacagcaaaaccttcgaggtttccgaggcggtggcacttgaatcacacacgatcaagcatatgatcg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37580539 gcaacaaagaagatgatcactctgaagagttacgacagcaaaaccttcgaggtttccgaggcggtggcacatgaatcacacacgatcaagcatatgatcg 37580638  T
Q  214 aggaaaattgtgccgacaatgtaatcactattccaaacgtcaacaccaagatcctggcaaaggttattgaatacggtaagaagcatgtggaggccgctgc 313  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37580639 aggaaaattgtgccgaaaatgtaatcactattccaaacgtcaacagcaagatcctggcaaaggttattgaatactgtaagaagcatgtggaggccgctgc 37580738  T
Q  314 aaaggctagttctgatgatcttaattgttgggatgctgatttcgttaaggttgataa 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37580739 aaaggctagttctgatgatcttaattgttgggatgctgatttcgttaaggttgataa 37580795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 97 - 307
Target Start/End: Complemental strand, 37526028 - 37525818
Alignment:
Q  97 caatcaacatgtcttcggcaacaaagaagatgatcactctgaagagttacgacagcaaaaccttcgaggtttccgaggcggtggcacttgaatcacacac 196  Q
    |||||| |||||||||  || ||||||||||||||||||| |||||| ||||| || ||||||| |||||||||||||||||||||||| |||| || ||    
T  37526028 caatcaccatgtcttcaacatcaaagaagatgatcactctcaagagtgacgacggcgaaacctttgaggtttccgaggcggtggcacttaaatctcagac 37525929  T
Q  197 gatcaagcatatgatcgaggaaaattgtgccgacaatgtaatcactattccaaacgtcaacaccaagatcctggcaaaggttattgaatacggtaagaag 296  Q
    ||||||||| || ||||||||  ||||||||||||| |||||| || |||| || ||||    ||||||  |||| ||||| ||||||||| ||||||||    
T  37525928 gatcaagcacataatcgaggatgattgtgccgacaacgtaatccctgttcctaatgtcactggcaagatattggcgaaggtgattgaatactgtaagaag 37525829  T
Q  297 catgtggaggc 307  Q
    ||||| |||||    
T  37525828 catgtcgaggc 37525818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 97 - 307
Target Start/End: Original strand, 37535207 - 37535416
Alignment:
Q  97 caatcaacatgtcttcggcaacaaagaagatgatcactctgaagagttacgacagcaaaaccttcgaggtttccgaggcggtggcacttgaatcacacac 196  Q
    |||||| |||||||||  || ||||||||||||||||||| |||||| ||||| || |||| || |||||||||||||||||||||||  |||| || ||    
T  37535207 caatcaccatgtcttcaacatcaaagaagatgatcactctcaagagtgacgacggcgaaacgtttgaggtttccgaggcggtggcactcaaatctcagac 37535306  T
Q  197 gatcaagcatatgatcgaggaaaattgtgccgacaatgtaatcactattccaaacgtcaacaccaagatcctggcaaaggttattgaatacggtaagaag 296  Q
    ||||||||| || ||||||||  ||||||||||||| |||||| || |||| || ||||    ||||||  |||||||||| ||||||||| ||||||||    
T  37535307 gatcaagcacataatcgaggatgattgtgccgacaacgtaatc-ctgttcctaatgtcactggcaagatattggcaaaggtgattgaatactgtaagaag 37535405  T
Q  297 catgtggaggc 307  Q
    ||||| |||||    
T  37535406 catgtcgaggc 37535416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 74 - 308
Target Start/End: Original strand, 37564211 - 37564449
Alignment:
Q  74 atttcacacctttccgaaaatctca----atcaacatgtcttcggcaacaaagaagatgatcactctgaagagttacgacagcaaaaccttcgaggtttc 169  Q
    |||||||||||||| ||||||||||    |||| |||||||||   ||| ||||||||||||||| ||||||||| | || |  ||||||||||||||||    
T  37564211 atttcacacctttctgaaaatctcagtcgatcaccatgtcttcaataacgaagaagatgatcactttgaagagttccaacggtgaaaccttcgaggtttc 37564310  T
Q  170 cgaggcggtggcacttgaatcacacacgatcaagcatatgatcgaggaaaattgtgccgacaatgtaatcactattccaaacgtcaacaccaagatcctg 269  Q
    |||||||||||||||| |||| || || ||||||   ||||| ||||| ||||||| | |||| | |||| ||||||  ||||| || | ||||||  ||    
T  37564311 cgaggcggtggcacttcaatcgcagacaatcaagggcatgatggaggagaattgtggcaacaacggaatccctattcttaacgtgaagagcaagatattg 37564410  T
Q  270 gcaaaggttattgaatacggtaagaagcatgtggaggcc 308  Q
    |||||||| | ||||||| |||||| |||||| ||||||    
T  37564411 gcaaaggtgactgaatactgtaagatgcatgtcgaggcc 37564449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 120 - 307
Target Start/End: Original strand, 37540359 - 37540546
Alignment:
Q  120 aagaagatgatcactctgaagagttacgacagcaaaaccttcgaggtttccgaggcggtggcacttgaatcacacacgatcaagcatatgatcgaggaaa 219  Q
    ||||||||||||||||| ||||||| ||||| | ||||||| |||||| ||||||| |||||||||||||| || ||||||||||| |||||||||||      
T  37540359 aagaagatgatcactctaaagagttccgacaacgaaacctttgaggttcccgaggctgtggcacttgaatcgcagacgatcaagcacatgatcgaggacg 37540458  T
Q  220 attgtgccgacaatgtaatcactattccaaacgtcaacaccaagatcctggcaaaggttattgaatacggtaagaagcatgtggaggc 307  Q
    ||||| ||||||| | |||| |  |||| ||||| | ||   ||||  |||| ||||| ||||||||  ||||||||||||| |||||    
T  37540459 attgtaccgacaacggaatcccagttcctaacgtgaccagtcagatattggcgaaggtgattgaataatgtaagaagcatgtcgaggc 37540546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 37466785 - 37466650
Alignment:
Q  97 caatcaacatgtcttcggcaacaaagaagatgatcactctgaagagttacgacagcaaaaccttcgaggtttccgaggcggtggcacttgaatcacacac 196  Q
    |||||| |||||||||  |||| | |||||||||||| |||||||||||||||| | ||| ||| |||||  ||||||||||||| || |||||||| ||    
T  37466785 caatcaccatgtcttcaacaaccacgaagatgatcaccctgaagagttacgacaacgaaatctttgaggtccccgaggcggtggcgctcgaatcacagac 37466686  T
Q  197 gatcaagcatatgatcgaggaaaattgtgccgacaa 232  Q
     |||||||| |||||||||||  |||||||||||||    
T  37466685 aatcaagcacatgatcgaggacgattgtgccgacaa 37466650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 123 - 232
Target Start/End: Complemental strand, 37476548 - 37476439
Alignment:
Q  123 aagatgatcactctgaagagttacgacagcaaaaccttcgaggtttccgaggcggtggcacttgaatcacacacgatcaagcatatgatcgaggaaaatt 222  Q
    |||| ||||||||| ||||||| ||||| | ||||||| |||||| ||||||| |||||||||||||| || ||||||||||| |||||||||||  |||    
T  37476548 aagaagatcactctcaagagttccgacaacgaaacctttgaggttcccgaggctgtggcacttgaatcgcagacgatcaagcacatgatcgaggacgatt 37476449  T
Q  223 gtgccgacaa 232  Q
    || |||||||    
T  37476448 gtaccgacaa 37476439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 123 - 232
Target Start/End: Complemental strand, 37481070 - 37480961
Alignment:
Q  123 aagatgatcactctgaagagttacgacagcaaaaccttcgaggtttccgaggcggtggcacttgaatcacacacgatcaagcatatgatcgaggaaaatt 222  Q
    |||| ||||||||| ||||||| ||||| | ||||||| |||||| |||||||||||||||||||||| || ||||||||| | |||||||||||  |||    
T  37481070 aagaagatcactctcaagagttccgacaacgaaacctttgaggttcccgaggcggtggcacttgaatcgcagacgatcaagtacatgatcgaggacgatt 37480971  T
Q  223 gtgccgacaa 232  Q
    || |||||||    
T  37480970 gtaccgacaa 37480961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 123 - 310
Target Start/End: Original strand, 6778370 - 6778557
Alignment:
Q  123 aagatgatcactctgaagagttacgacagcaaaaccttcgaggtttccgaggcggtggcacttgaatcacacacgatcaagcatatgatcgaggaaaatt 222  Q
    |||| ||| ||||| ||||||| ||||| | ||||||| |||||| ||||||| |||||||||||||| || ||||||||||| |||||||||||  |||    
T  6778370 aagaagatgactctcaagagttccgacaacgaaacctttgaggttcccgaggctgtggcacttgaatcgcagacgatcaagcacatgatcgaggacgatt 6778469  T
Q  223 gtgccgacaatgtaatcactattccaaacgtcaacaccaagatcctggcaaaggttattgaatacggtaagaagcatgtggaggccgc 310  Q
    || ||||||| | |||| |  |||| ||||| | |    ||||  |||| ||||| ||||||||| ||||||||||||| || |||||    
T  6778470 gtaccgacaacggaatcccagttcctaacgtgaccggtcagatattggcgaaggtgattgaatactgtaagaagcatgttgatgccgc 6778557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 217
Target Start/End: Original strand, 6774083 - 6774177
Alignment:
Q  123 aagatgatcactctgaagagttacgacagcaaaaccttcgaggtttccgaggcggtggcacttgaatcacacacgatcaagcatatgatcgagga 217  Q
    |||| ||||||||| ||||||| ||||| | ||||||| |||||| | ||||| |||||||||||||  || || |||||||| |||||| ||||    
T  6774083 aagaagatcactctcaagagttccgacaacgaaacctttgaggttcctgaggctgtggcacttgaattgcagacaatcaagcacatgatcaagga 6774177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 370
Target Start/End: Complemental strand, 37466526 - 37466497
Alignment:
Q  341 ttgggatgctgatttcgttaaggttgataa 370  Q
    ||||||||||||||||||||||||||||||    
T  37466526 ttgggatgctgatttcgttaaggttgataa 37466497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 37557372 - 37557472
Alignment:
Q  123 aagatgatcactctgaagagttacgacagcaaaaccttcgaggtttccgaggcggtggcacttgaatcacacacgatcaagcatatgatcgaggaaaatt 222  Q
    |||| ||||||||||||||||| |||| |||||| |||||| ||||| ||| | |||||  | ||||| || || |||||||  ||||| ||||| ||||    
T  37557372 aagaagatcactctgaagagttccgactgcaaaagcttcgaagtttcggagcctgtggctatggaatcgcagacaatcaagcgcatgatggaggagaatt 37557471  T
Q  223 g 223  Q
    |    
T  37557472 g 37557472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 123 - 232
Target Start/End: Complemental strand, 37363200 - 37363091
Alignment:
Q  123 aagatgatcactctgaagagttacgacagcaaaaccttcgaggtttccgaggcggtggcacttgaatcacacacgatcaagcatatgatcgaggaaaatt 222  Q
    |||| ||||||||| ||||||| |||| || |||||||||||||||| ||||||||||| ||||||||  | ||||||||||| |||||||| ||  |||    
T  37363200 aagaagatcactctaaagagttccgacggcgaaaccttcgaggtttctgaggcggtggcgcttgaatcgtagacgatcaagcacatgatcgaagacgatt 37363101  T
Q  223 gtgccgacaa 232  Q
    ||||||||||    
T  37363100 gtgccgacaa 37363091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 306
Target Start/End: Original strand, 55118630 - 55118811
Alignment:
Q  128 gatcactctgaagagttacgacagcaaaaccttcgaggtttccgaggcggtggcacttgaatcacacacgatcaagcatatgatcgaggaaaattgtgcc 227  Q
    |||||||||||| ||||  ||| ||||||| || |||||||  ||||  |||||||| |||||||| || |||||||| |||||| || | ||| ||| |    
T  55118630 gatcactctgaaaagttcagacggcaaaacttttgaggtttatgaggatgtggcactggaatcacagacaatcaagcacatgatcaagaagaatagtggc 55118729  T
Q  228 ---gacaatgtaatcactattccaaacgtcaacaccaagatcctggcaaaggttattgaatacggtaagaagcatgtggagg 306  Q
       ||||||| ||||  |||||  ||||| ||   ||||||| || | ||||||||||||||| ||||||||||||||||||    
T  55118730 agcgacaatgaaatcgttattctgaacgttaagggcaagatcttgacgaaggttattgaatactgtaagaagcatgtggagg 55118811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 11160509 - 11160617
Alignment:
Q  122 gaagatgatcactctgaagagttacgacagcaaaaccttcgaggtttccgaggcggtggcacttgaatcacacacgatcaagcatatgatcgaggaaaat 221  Q
    ||||| |||||| |||||||||| ||||| | | ||||||||  ||    ||||||||||| | ||||| || |||||||||||| ||||||| || |||    
T  11160509 gaagaagatcacactgaagagttccgacaacgagaccttcgaaattgaaaaggcggtggcattagaatctcaaacgatcaagcatttgatcgatgacaat 11160608  T
Q  222 tgtgccgac 230  Q
    |||||||||    
T  11160609 tgtgccgac 11160617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 123 - 227
Target Start/End: Original strand, 50914902 - 50915006
Alignment:
Q  123 aagatgatcactctgaagagttacgacagcaaaaccttcgaggtttccgaggcggtggcacttgaatcacacacgatcaagcatatgatcgaggaaaatt 222  Q
    |||| ||||||||| || |||| |||| || |||||||| | |||||| ||  |||||||| |||||| ||   |||||||||||||||||||||| |||    
T  50914902 aagaagatcactctcaacagttccgacggcgaaaccttcaaagtttccaagatggtggcacgtgaatcgcaggtgatcaagcatatgatcgaggaagatt 50915001  T
Q  223 gtgcc 227  Q
    |||||    
T  50915002 gtgcc 50915006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 301
Target Start/End: Original strand, 8991311 - 8991484
Alignment:
Q  128 gatcactctgaagagttacgacagcaaaaccttcgaggtttccgaggcggtggcacttgaatcacacacgatcaagcatatgatcgaggaaaattgtgcc 227  Q
    ||||||||| ||||||| |||| |  | |||||||||||    || ||||||||  | ||||| || |||||||||||||||||||| ||  |||| ||     
T  8991311 gatcactctcaagagttccgacggtgagaccttcgaggtcgatgaagcggtggctttggaatctcagacgatcaagcatatgatcgaagatgattgcgct 8991410  T
Q  228 gacaatgtaatcactattccaaacgtcaacaccaagatcctggcaaaggttattgaatacggtaagaagcatgt 301  Q
    |||| || |||| || |||| ||||| | || ||||||| |||| ||||| ||||| ||  | |||||||||||    
T  8991411 gacagtggaatccctcttcccaacgttaccagcaagatcttggcgaaggtgattgagtattgcaagaagcatgt 8991484  T

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