View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14557_low_9 (Length: 327)
Name: NF14557_low_9
Description: NF14557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14557_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 119 - 310
Target Start/End: Original strand, 6738270 - 6738461
Alignment:
| Q |
119 |
agtaaaacactgcatgcaagtatatcatgtacctttttggctttgtttatctggattatttcatgtaagtaaaacaatgcatggcgttggatactactct |
218 |
Q |
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| T |
6738270 |
agtaaaacactgcatgcaagtatatcatgtacttttttggctttgtttatctggattatttcatgtaagtaaaacaatgcatggcgttggatactactct |
6738369 |
T |
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| Q |
219 |
ctacttcatttggatgaacatattccatgacaacaaacattgcttcatatatatttctttccacagattaattgcatctgattatcagaaat |
310 |
Q |
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| T |
6738370 |
ctacttcatttggatgaacatataccatgacaacaaacattgcttcatatatatttctttccacagattaattgcatctgattatcagaaat |
6738461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 6738129 - 6738258
Alignment:
| Q |
4 |
atgtcgaagaaaattcagatgcaattttaattatgttagcttttgtattttagttatttcacaaagattttggtgtcattatagaggctgtaatattgtt |
103 |
Q |
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| T |
6738129 |
atgtcaaataaaattcagatgcaattttaattatgttagcttttgtattttagttatttcacaaagattttggtgtcattatagaggctgtaatattgtt |
6738228 |
T |
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| Q |
104 |
taagacaacagaaagagtaaaacactgcat |
133 |
Q |
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| T |
6738229 |
taagacaacagaaagagtaaaacactgcat |
6738258 |
T |
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