View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14558_high_3 (Length: 267)
Name: NF14558_high_3
Description: NF14558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14558_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 7966891 - 7967131
Alignment:
| Q |
1 |
aacgcatcaccaacctttgcttcaacaacagcaacaaaccatgccggaataacatgatcaatatcaatattaatatcaatatcaagctcgttcttgtaga |
100 |
Q |
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| T |
7966891 |
aacgcatcaccaacctttgcttcaacaacagcaacaaaccatgccggaataacatgatcaatatcaata------tcaatatcaagctcgttcttgtaga |
7966984 |
T |
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| Q |
101 |
gaaattcatgatccgagctcattaaaacgtagtcgtgagaaagtgcgaagatgtaaccggcggtggaggcgtgaccggtgacaacggcaatggtaggcat |
200 |
Q |
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| T |
7966985 |
gaaattcatgatcggagctcattaaaaagtagtcgtgagaaagtgcgaagatgtaaccggcggtggaggcgtgaccggtgacaacggcaatggtaggcat |
7967084 |
T |
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| Q |
201 |
agggagagaaatgagttcggagacgacagaacggagtgaaacatcga |
247 |
Q |
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| T |
7967085 |
agggagagaaatgagttcggaaaggacagaacggagtgaatcatcga |
7967131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 7973923 - 7973772
Alignment:
| Q |
82 |
tcaagctcgttcttgtagagaaattcatgatccgagctcattaaaacgtagtcgtgagaaagtgcgaagatgtaaccggcggtggaggcgtgaccggtga |
181 |
Q |
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| T |
7973923 |
tcaagctcactcatgtagagaaatccacgatcggatcgcattaacacgtagtcgtgagataatgcgaggatgtaacctgcggcggatgcgtgaccggtga |
7973824 |
T |
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| Q |
182 |
caacggcaatggtaggcatagggagagaaatgagttcggagacgacagaacg |
233 |
Q |
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| T |
7973823 |
cggcggcgatggtaggcatgggaagagagagaagttcggagacgacggaacg |
7973772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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