View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14558_low_2 (Length: 459)
Name: NF14558_low_2
Description: NF14558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14558_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 380
Target Start/End: Complemental strand, 9732476 - 9732116
Alignment:
| Q |
19 |
ccagaatcagatgtgagatatttctcattctttgcataactaattcaatcttgttttttcataagatatctagtgctaaaggaaaatattccatgttgaa |
118 |
Q |
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| T |
9732476 |
ccagaatcagatgtgagatatttctcattctttgcatatctaattcaatcttgttttttcataagatatctagtgctaaaggaaaatattccatgttgaa |
9732377 |
T |
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| Q |
119 |
aagtgagnnnnnnnaaaagtttttaactgtttctgaaactagttttggtttctcttgatggttttgtgcagcaaactgagcctgtagatcctgatccaaa |
218 |
Q |
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| T |
9732376 |
aagtgagtttttt-aaaagtttttaactgtttctgaaactagttttggtttctcttgatggttttgtgcagcaaactgagcctgtagatcctgatccaaa |
9732278 |
T |
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| Q |
219 |
tccttctggttctccaaaacagaagtttcactcattttgcaaaatattaactgcatctgatactagcacacatggtggattttcagttctgaggaaacat |
318 |
Q |
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| T |
9732277 |
tccttctgattctccaaaacagaagtttcactcattttgcaaaatattaactgcatctgatactagcacacatggtggattttcagttctgaggaaacat |
9732178 |
T |
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| Q |
319 |
gctaccgagtgcttgccgccattggtaattttcttaccgagtttctttggatgatgctatca |
380 |
Q |
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| T |
9732177 |
gctaccgagtgcttgccgccattggtaattttcttaccgagtttctttggatgatgctatca |
9732116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 320
Target Start/End: Complemental strand, 7076630 - 7076555
Alignment:
| Q |
245 |
ttcactcattttgcaaaatattaactgcatctgatactagcacacatggtggattttcagttctgaggaaacatgc |
320 |
Q |
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| T |
7076630 |
ttcactcattctgcaagatcttaaccgcttcggatactagtacacatggtggcttctctgttctcaggaaacatgc |
7076555 |
T |
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