View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14558_low_4 (Length: 431)

Name: NF14558_low_4
Description: NF14558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14558_low_4
NF14558_low_4
[»] chr8 (4 HSPs)
chr8 (1-241)||(5022026-5022266)
chr8 (268-400)||(5022248-5022380)
chr8 (19-67)||(23712109-23712157)
chr8 (141-185)||(23712231-23712275)
[»] chr5 (4 HSPs)
chr5 (185-390)||(41646883-41647102)
chr5 (185-390)||(41654418-41654637)
chr5 (280-392)||(41620995-41621107)
chr5 (185-269)||(41620886-41620970)
[»] chr2 (1 HSPs)
chr2 (185-269)||(2433488-2433572)
[»] chr6 (2 HSPs)
chr6 (185-269)||(12438414-12438498)
chr6 (279-353)||(12438525-12438599)


Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 5022026 - 5022266
Alignment:
Q  1 ttcttggtgtcagcatactcgaatccattcatgtggccaagaagaaaggggacaaaagaatccaccagcnnnnnnnntcacaccctctagtccacgccgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  5022026 ttcttggtgtcagcatactcgaatccattcatgtggccaagaagaaaggggacaaaagaatccaccagcaaaaaaaatcacaccctctagtccacgccgc 5022125  T
Q  101 gcactcccaaaagcagcaaaacacggtataatagcaccaacaataattgataggcactcatagtaaaagatggaaaataatccatcttccaattgcccat 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5022126 gcactcccaaaagcagcaaaacacagtataatagcaccaacaataattgataggcactcatagtaaaagatggaaaataatccatcttccaattgcccat 5022225  T
Q  201 gcattcacaagaacttgtgttcctgctggtattgtgtattc 241  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  5022226 gcattcacaagaacttgtgttcctgctggtattgtgcattc 5022266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 268 - 400
Target Start/End: Original strand, 5022248 - 5022380
Alignment:
Q  268 ctgctggtattgtgcattcttaaggtttctttaatcacttcttttagaaatttcaattcttgaagatccacttcatcaacatatcctcttccactaaaaa 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5022248 ctgctggtattgtgcattcttaaggtttctttaatcacttcttttagaaatttcaattcttgaagatccacttcatcaacatatcctgttccactaaaaa 5022347  T
Q  368 cctgtctaacttcttcttgagccctaatcagta 400  Q
    |||||||||||||||||||||||||||||||||    
T  5022348 cctgtctaacttcttcttgagccctaatcagta 5022380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 23712109 - 23712157
Alignment:
Q  19 tcgaatccattcatgtggccaagaagaaaggggacaaaagaatccacca 67  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23712109 tcgaatccattcacgtggccaagaagaaaggggacaaaagaatccacca 23712157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 23712231 - 23712275
Alignment:
Q  141 caataattgataggcactcatagtaaaagatggaaaataatccat 185  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||    
T  23712231 caataattgatgggcactcatagtaaaatatggaaaataatccat 23712275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 185 - 390
Target Start/End: Complemental strand, 41647102 - 41646883
Alignment:
Q  185 tcttccaattgcccatgcattcacaagaacttgtgttcctgctggtattgtgtattcactaatctcacaagtttcaatacactct--------gctggta 276  Q
    ||||||||||||||||| ||||||||  ||||||||||| ||||||||||||||| || | ||||||||||||||||||||||||        | | | |    
T  41647102 tcttccaattgcccatgaattcacaaacacttgtgttccagctggtattgtgtatccatttatctcacaagtttcaatacactctctaggaaagatagga 41647003  T
Q  277 tt------gtgcattcttaaggtttctttaatcacttcttttagaaatttcaattcttgaagatccacttcatcaacatatcctcttccactaaaaacct 370  Q
    ||      ||||| |||||||||||||||||| ||| ||||||||||||||| || |||||||||   |||||||||||||||||| | || |||| | |    
T  41647002 ttagaagggtgcaatcttaaggtttctttaataactgcttttagaaatttcagtttttgaagatctttttcatcaacatatcctctgctaccaaaagctt 41646903  T
Q  371 gtctaacttcttcttgagcc 390  Q
    ||||||||||||||||||||    
T  41646902 gtctaacttcttcttgagcc 41646883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 185 - 390
Target Start/End: Complemental strand, 41654637 - 41654418
Alignment:
Q  185 tcttccaattgcccatgcattcacaagaacttgtgttcctgctggtattgtgtattcactaatctcacaagtttcaatacactct--------gctggta 276  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||||||||||||| || | ||||||||||||||||||||||||        |   | |    
T  41654637 tcttccaattgcccatgcattcacaaacacttgtgttccagctggtattgtgtatccatttatctcacaagtttcaatacactctctaggaaagacagga 41654538  T
Q  277 tt------gtgcattcttaaggtttctttaatcacttcttttagaaatttcaattcttgaagatccacttcatcaacatatcctcttccactaaaaacct 370  Q
    ||       |||| |||||| ||||||||||| ||| |||||||| |||||| ||||||||||||   |||||||||||||||||| | || |||| | |    
T  41654537 ttaggaggatgcactcttaatgtttctttaataactgcttttagatatttcagttcttgaagatctttttcatcaacatatcctctgctaccaaaagctt 41654438  T
Q  371 gtctaacttcttcttgagcc 390  Q
    ||||||||||||||||||||    
T  41654437 gtctaacttcttcttgagcc 41654418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 280 - 392
Target Start/End: Original strand, 41620995 - 41621107
Alignment:
Q  280 tgcattcttaaggtttctttaatcacttcttttagaaatttcaattcttgaagatccacttcatcaacatatcctcttccactaaaaacctgtctaactt 379  Q
    |||| ||| |||||||||||||| ||| ||||||||||||||| ||||| ||||||   |||||||||||||||||| | |  |||| | ||||||||||    
T  41620995 tgcagtctgaaggtttctttaataactgcttttagaaatttcagttcttcaagatctttttcatcaacatatcctctgctaacaaaagcatgtctaactt 41621094  T
Q  380 cttcttgagccct 392  Q
    |||||||||||||    
T  41621095 cttcttgagccct 41621107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 41620886 - 41620970
Alignment:
Q  185 tcttccaattgcccatgcattcacaagaacttgtgttcctgctggtattgtgtattcactaatctcacaagtttcaatacactct 269  Q
    |||| |||||||||||| |||||| |  || ||||||||  | |||||||||||| || | |||||||||||||||  |||||||    
T  41620886 tcttgcaattgcccatgtattcactaacacgtgtgttccgcccggtattgtgtatccatttatctcacaagtttcagcacactct 41620970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 185 - 269
Target Start/End: Complemental strand, 2433572 - 2433488
Alignment:
Q  185 tcttccaattgcccatgcattcacaagaacttgtgttcctgctggtattgtgtattcactaatctcacaagtttcaatacactct 269  Q
    |||||| ||||||||| |||||||||  ||||||||||| | ||||||||||||| || ||||||||||||||||||||||||||    
T  2433572 tcttcctattgcccatccattcacaaacacttgtgttccagatggtattgtgtatccattaatctcacaagtttcaatacactct 2433488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 185 - 269
Target Start/End: Original strand, 12438414 - 12438498
Alignment:
Q  185 tcttccaattgcccatgcattcacaagaacttgtgttcctgctggtattgtgtattcactaatctcacaagtttcaatacactct 269  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| |  ||| | ||||| ||||||||||||||    
T  12438414 tcttccaattgcccatgcattcacaagcacttgtgttccggctggtattatgtatccgttaaccacacaattttcaatacactct 12438498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 279 - 353
Target Start/End: Original strand, 12438525 - 12438599
Alignment:
Q  279 gtgcattcttaaggtttctttaatcacttcttttagaaatttcaattcttgaagatccacttcatcaacatatcc 353  Q
    ||||| |||||||||||||||||||||| |||||| | |||| | |||||||||||  | |||||||||||||||    
T  12438525 gtgcaatcttaaggtttctttaatcactgcttttaaatattttagttcttgaagatttatttcatcaacatatcc 12438599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University