View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14559_low_1 (Length: 660)

Name: NF14559_low_1
Description: NF14559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14559_low_1
NF14559_low_1
[»] chr3 (1 HSPs)
chr3 (4-643)||(44089468-44090123)


Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 4 - 643
Target Start/End: Complemental strand, 44090123 - 44089468
Alignment:
Q  4 attattctctgaaaaacgcatagctcaattattaaggacgttgcaatata-aggggttaataacaacaataaaaaatctagcagggatagcttggtaaaa 102  Q
    |||||||| ||||||||| |||||| ||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44090123 attattctttgaaaaacgtatagcttaattattaaggacattgcaatatacaggggttaataacaacaacaaaaaatctagcagggatagcttggtaaaa 44090024  T
Q  103 tatttatcatatt----------------atctcttcttcgctgtttgactatttcttctacaaatgaaaatagtaattgtcccaaaagttgctggttta 186  Q
    |||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44090023 tatttatcatatttaaaatttgtcatattatctcttcttcgctgtttgactatttcttctacaaatgaaaatagtaattgtcccaaaagttgctggttta 44089924  T
Q  187 ttatttaaagaaatatttcatttaaatcatgaccgggtaaaatgttttcataggtatgcttaatgtcgttcnnnnnnnnnnnnnntaa-ggtatgcttaa 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||| |||||||||||    
T  44089923 ttatttaaagaaatatttcatttaaatcatgaccgggtaaaatgttttcataggtatgcttaatgtcgttcaaaaaaataaaaaataaaggtatgcttaa 44089824  T
Q  286 tgcttccttgactcgtctcagtataattagaggatatagttttctaactaactaccaatacttagctgatgcactcaaataaacaaagataattttaatt 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||    
T  44089823 tgcttccttgactcgtctcagtataattagaggatatagttttctaactaactaccaatacttcgctgatgcactcaaataaaca--gataattttaatt 44089726  T
Q  386 atcaaatatgtaaaatgaatgtccctactataatcaaaacccaagaattcaagaataactcaagtgtcctttgcaattcttcacgccttgaatcctctat 485  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44089725 atcaaatatgtaaaatgaatgtcactactataatcaaaacccaagaattcaagaataactcaagtgtcctttgcaattcttcacgccttgaatcctctat 44089626  T
Q  486 tttacatattctgaatttccatcaggcaaaagaacaagagtattcataatttaagcaatccatcctcctcctagtttctttactttgctttttatatcat 585  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44089625 tttacatattctgaatttccatcaggcaaaagaacaagagtattcataatttaagcaatccatcctcctcctagtttctttactttgctttttatatcat 44089526  T
Q  586 ataagaatgggaagcaaccttctgaaagtgagaagctgcgatcaacatacctactaaa 643  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44089525 ataagaatgggaagcaaccttctgaaagtgagaagctgcgatcaacatacctactaaa 44089468  T

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