View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14559_low_12 (Length: 202)
Name: NF14559_low_12
Description: NF14559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14559_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 51721442 - 51721325
Alignment:
| Q |
75 |
ggtcaatgaaagaga--gaggatcatcatgtaaagtaagtaacagtgaatgcatgtggtttctgtatgcatggtgtggtggttaattctttaaagatcca |
172 |
Q |
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| T |
51721442 |
ggtcaatgagagagaaagaggatcatcatgtaaaataagtaatagtgaatgcatgtggtttctgtatgcatggtgtggtggttaattctttaaagatcca |
51721343 |
T |
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| Q |
173 |
gtcaaattggcctttgct |
190 |
Q |
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| T |
51721342 |
gtcaaattggtctttgct |
51721325 |
T |
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Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 85 - 190
Target Start/End: Original strand, 26617259 - 26617355
Alignment:
| Q |
85 |
agagagaggatcatcatgtaaagtaagtaacagtgaatgcatgtggtttctgtatgcatggtgtggtggttaattctttaaagatccagtcaaattggcc |
184 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
26617259 |
agagagagggtcatcatgtaaagt----aacagtgaatgcatgtggtttctgtatgca-----tggtggttaattctttaaagatccagtcaaattggtc |
26617349 |
T |
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