View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14559_low_3 (Length: 557)

Name: NF14559_low_3
Description: NF14559
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14559_low_3
NF14559_low_3
[»] chr5 (19 HSPs)
chr5 (188-536)||(3040208-3040553)
chr5 (201-376)||(30735282-30735457)
chr5 (201-376)||(25493791-25493966)
chr5 (198-360)||(30700828-30700990)
chr5 (198-376)||(40519151-40519328)
chr5 (198-376)||(30071743-30071921)
chr5 (3-189)||(2190282-2190468)
chr5 (3-145)||(3039974-3040114)
chr5 (198-363)||(20359896-20360063)
chr5 (198-328)||(34280064-34280194)
chr5 (92-189)||(17066797-17066894)
chr5 (197-356)||(24402035-24402196)
chr5 (58-172)||(20419480-20419594)
chr5 (247-323)||(7547291-7547366)
chr5 (8-102)||(17066852-17066945)
chr5 (264-371)||(21259195-21259301)
chr5 (223-275)||(9666899-9666951)
chr5 (59-107)||(25994911-25994958)
chr5 (1-73)||(20419403-20419474)
[»] chr2 (23 HSPs)
chr2 (197-376)||(20142940-20143119)
chr2 (206-376)||(13716676-13716846)
chr2 (201-376)||(19945685-19945860)
chr2 (206-343)||(27007174-27007311)
chr2 (197-343)||(14131161-14131307)
chr2 (200-373)||(38320153-38320333)
chr2 (197-371)||(32975977-32976153)
chr2 (59-185)||(24582502-24582628)
chr2 (233-376)||(37714395-37714538)
chr2 (230-360)||(35457389-35457518)
chr2 (197-358)||(3167886-3168046)
chr2 (217-373)||(31645074-31645231)
chr2 (210-362)||(4434283-4434438)
chr2 (198-376)||(37899471-37899639)
chr2 (198-364)||(27407406-27407571)
chr2 (198-279)||(31264827-31264908)
chr2 (218-301)||(31845461-31845544)
chr2 (272-376)||(24183943-24184047)
chr2 (1-73)||(24582393-24582465)
chr2 (59-134)||(24582470-24582545)
chr2 (244-314)||(5881435-5881505)
chr2 (40-77)||(34233611-34233648)
chr2 (12-85)||(25770376-25770449)
[»] chr1 (29 HSPs)
chr1 (195-376)||(35412998-35413179)
chr1 (217-375)||(10061565-10061723)
chr1 (196-371)||(29657341-29657516)
chr1 (196-372)||(35149620-35149796)
chr1 (229-376)||(43537134-43537284)
chr1 (210-364)||(26469928-26470082)
chr1 (235-376)||(21540046-21540187)
chr1 (197-376)||(48852615-48852794)
chr1 (239-376)||(23906605-23906742)
chr1 (242-376)||(11469995-11470130)
chr1 (34-171)||(19062866-19063002)
chr1 (33-142)||(32306405-32306513)
chr1 (201-293)||(9113421-9113514)
chr1 (292-360)||(49313595-49313663)
chr1 (128-191)||(8360166-8360229)
chr1 (33-124)||(21258292-21258382)
chr1 (288-343)||(13085089-13085144)
chr1 (217-298)||(4684518-4684599)
chr1 (196-240)||(13085032-13085076)
chr1 (115-191)||(29694020-29694095)
chr1 (201-261)||(49401987-49402047)
chr1 (198-250)||(34475804-34475856)
chr1 (33-77)||(36816970-36817014)
chr1 (197-259)||(44958464-44958524)
chr1 (1-54)||(8360104-8360157)
chr1 (251-316)||(33077719-33077784)
chr1 (56-89)||(37919766-37919799)
chr1 (344-376)||(13085134-13085166)
chr1 (226-364)||(47996661-47996800)
[»] chr6 (13 HSPs)
chr6 (199-371)||(32871711-32871884)
chr6 (197-362)||(34713487-34713652)
chr6 (198-376)||(6784660-6784838)
chr6 (220-376)||(2130472-2130628)
chr6 (216-376)||(28867157-28867317)
chr6 (198-312)||(3855694-3855807)
chr6 (251-355)||(6519233-6519337)
chr6 (226-377)||(11301807-11301958)
chr6 (99-189)||(24624901-24624991)
chr6 (59-163)||(9863526-9863629)
chr6 (35-106)||(9863432-9863502)
chr6 (33-102)||(9875776-9875844)
chr6 (92-136)||(9875774-9875818)
[»] chr8 (15 HSPs)
chr8 (198-376)||(38585046-38585224)
chr8 (195-360)||(29414370-29414535)
chr8 (200-376)||(5718407-5718591)
chr8 (200-318)||(25124400-25124518)
chr8 (61-189)||(31271803-31271931)
chr8 (199-356)||(33543341-33543494)
chr8 (226-328)||(5686276-5686378)
chr8 (200-376)||(24068076-24068252)
chr8 (244-376)||(36947229-36947363)
chr8 (306-376)||(29543678-29543748)
chr8 (234-343)||(26415557-26415666)
chr8 (265-376)||(35393712-35393823)
chr8 (197-343)||(43063809-43063955)
chr8 (8-76)||(27459879-27459947)
chr8 (151-188)||(36933377-36933414)
[»] chr3 (22 HSPs)
chr3 (198-371)||(1632786-1632958)
chr3 (214-343)||(26442954-26443083)
chr3 (201-343)||(18271924-18272066)
chr3 (197-376)||(45852891-45853070)
chr3 (196-372)||(10593417-10593592)
chr3 (197-376)||(34905818-34905997)
chr3 (3-189)||(44798655-44798841)
chr3 (195-340)||(1713933-1714078)
chr3 (59-189)||(39926443-39926572)
chr3 (209-356)||(2671895-2672042)
chr3 (197-334)||(31192073-31192210)
chr3 (235-376)||(48897675-48897816)
chr3 (224-363)||(40840633-40840771)
chr3 (33-107)||(8004285-8004359)
chr3 (89-189)||(22754718-22754811)
chr3 (3-87)||(39926355-39926439)
chr3 (8-63)||(22754818-22754873)
chr3 (1-76)||(15042961-15043036)
chr3 (147-189)||(8004364-8004406)
chr3 (53-102)||(45004435-45004483)
chr3 (9-41)||(44798862-44798894)
chr3 (92-140)||(45004441-45004489)
[»] chr7 (21 HSPs)
chr7 (198-371)||(23611708-23611880)
chr7 (1-186)||(34328560-34328743)
chr7 (197-343)||(46413700-46413849)
chr7 (230-376)||(21882759-21882905)
chr7 (198-371)||(20125567-20125740)
chr7 (219-376)||(22631452-22631609)
chr7 (250-371)||(46297590-46297711)
chr7 (197-376)||(8123663-8123842)
chr7 (226-331)||(1985023-1985128)
chr7 (38-171)||(11561368-11561500)
chr7 (33-172)||(9384608-9384746)
chr7 (59-189)||(43466693-43466823)
chr7 (198-371)||(19511387-19511560)
chr7 (242-382)||(23730507-23730645)
chr7 (197-360)||(24250417-24250574)
chr7 (239-360)||(44600996-44601109)
chr7 (1-106)||(2377160-2377264)
chr7 (3-77)||(47664519-47664593)
chr7 (33-77)||(31589463-31589507)
chr7 (214-254)||(15127564-15127604)
chr7 (59-107)||(23284773-23284820)
[»] chr4 (29 HSPs)
chr4 (201-382)||(42504155-42504333)
chr4 (199-376)||(37762777-37762956)
chr4 (198-363)||(5288507-5288672)
chr4 (230-376)||(24060548-24060694)
chr4 (257-376)||(19482490-19482609)
chr4 (209-321)||(30220727-30220838)
chr4 (249-371)||(41545392-41545514)
chr4 (256-364)||(25817649-25817757)
chr4 (239-343)||(29065277-29065381)
chr4 (198-376)||(16528535-16528716)
chr4 (92-190)||(46844623-46844721)
chr4 (241-373)||(51304300-51304431)
chr4 (58-187)||(5314312-5314441)
chr4 (197-293)||(19663341-19663433)
chr4 (197-262)||(19482799-19482864)
chr4 (93-185)||(45682765-45682857)
chr4 (8-87)||(46844572-46844651)
chr4 (201-262)||(19663274-19663335)
chr4 (58-134)||(23811319-23811393)
chr4 (209-361)||(2765339-2765489)
chr4 (268-369)||(41485716-41485817)
chr4 (306-375)||(42108752-42108821)
chr4 (306-361)||(13218442-13218497)
chr4 (59-106)||(20394077-20394123)
chr4 (12-74)||(10011691-10011753)
chr4 (12-74)||(10018832-10018894)
chr4 (38-83)||(10011605-10011650)
chr4 (38-83)||(10018746-10018791)
chr4 (59-143)||(23811277-23811360)
[»] scaffold0194 (1 HSPs)
scaffold0194 (194-311)||(27063-27180)
[»] scaffold0122 (1 HSPs)
scaffold0122 (233-376)||(18606-18749)
[»] scaffold0018 (1 HSPs)
scaffold0018 (264-374)||(69949-70059)
[»] scaffold0011 (2 HSPs)
scaffold0011 (1-89)||(12538-12626)
scaffold0011 (131-189)||(12471-12529)
[»] scaffold0247 (1 HSPs)
scaffold0247 (199-318)||(19220-19339)
[»] scaffold0260 (1 HSPs)
scaffold0260 (33-77)||(20513-20557)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 188 - 536
Target Start/End: Original strand, 3040208 - 3040553
Alignment:
Q  188 aatagtgatagggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacc 287  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  3040208 aatagtgatagggaaataatagacacagtgacaaaatttatcaagaaaattttaagacagtgtatttgctaacacctttccttaattacacaccattacc 3040307  T
Q  288 tcccttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaatcttcatagtga 387  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  3040308 tcccttgattttcaccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaatgctcatagtga 3040407  T
Q  388 tatgcttatgtggatggagttaaaagtaaattcattgtaacggtctctatcatctannnnnnnnnnnnnnnnnnggcaatgcttgcctattttcggcaca 487  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||    
T  3040408 tatgcttaagtggatggagttaaaagtaaattcattgtaacggtctctatcatcta-tttttttcttattttttggcaatgcttgcctattttcggcaca 3040506  T
Q  488 agtgactttgtaactgttttgtgatgtttttctctcgtaatacgttttg 536  Q
     ||||||||||||||||||||||  || |||||||||||||| ||||||    
T  3040507 ggtgactttgtaactgttttgtg--gtgtttctctcgtaatatgttttg 3040553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 201 - 376
Target Start/End: Original strand, 30735282 - 30735457
Alignment:
Q  201 aaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttcc 300  Q
    |||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||    
T  30735282 aaatgataggtacagtgacaaaatttatcaagaaaatttcaaaacagtgtatttgctaacactttttcttaattacccagcattacctcccttgatttcc 30735381  T
Q  301 gccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| |||||| ||||    
T  30735382 gccaaataacaaatttaattgattgagacattttcttgatatattcttaataaaaactatctagataaatagcaat 30735457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 201 - 376
Target Start/End: Complemental strand, 25493966 - 25493791
Alignment:
Q  201 aaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttcc 300  Q
    |||| |||||||||||||||| || |||| |||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||| ||||||||     
T  25493966 aaatgatagatacagtgacaacatgtatccagaaaatttcaagacagtatatttgttaatacatttccttaattacacaccattacctcctttgatttct 25493867  T
Q  301 gccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    | || | ||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||| |||||| ||||    
T  25493866 gacaaagaacaaatttaattggctgagacattttcttgatcaattcttgataaaaactctctagataaatagcaat 25493791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 198 - 360
Target Start/End: Original strand, 30700828 - 30700990
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatt 297  Q
    ||||||| |||| | ||||||||||||||||||| ||||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||||| |||    
T  30700828 gggaaatgataggtgcagtgacaaaatttatcaaaaaaattttaagacagtgtatttgctaacaccttttcttaattacacaacattacctcccttaatt 30700927  T
Q  298 tccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactct 360  Q
    | || || |||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  30700928 ttcgtcaaataacaaatttaattgattgagacattttcttaatatatttttgataaaaactct 30700990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 198 - 376
Target Start/End: Complemental strand, 40519328 - 40519151
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatt 297  Q
    ||||||| ||| |||||||||||||| ||||||||||||||| |||||||||||||||| || | |||| |||||||||||| ||||||||||| |||||    
T  40519328 gggaaatgataaatacagtgacaaaaattatcaagaaaattttaagacagtgtatttgccaatattttttcttaattacacatcattacctccc-tgatt 40519230  T
Q  298 tccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    |||  || |||||||||||||||| ||||||| | ||||| |||||||||||||||||||||||||| |||||| ||||    
T  40519229 tccatcaaataacaaatttaattggttgagacttattcttaataaattcttgataaaaactctctagataaatagcaat 40519151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 198 - 376
Target Start/End: Complemental strand, 30071921 - 30071743
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatt 297  Q
    ||||||| ||||||| ||||||||||||||| |||||||||| |||||| ||||||||||||| | |||||| |||||||||||| ||||| || |||||    
T  30071921 gggaaatgatagatagagtgacaaaatttatgaagaaaattttaagacaatgtatttgctaactcctttcctcaattacacaccactaccttccatgatt 30071822  T
Q  298 tccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    |||  || |||| ||||||||||| ||||||| |||||||| |||||||| |||||||||||| ||| |||||| ||||    
T  30071821 tccaacaaataataaatttaattggttgagaccttttcttgttaaattctagataaaaactctttagataaatagcaat 30071743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 3 - 189
Target Start/End: Complemental strand, 2190468 - 2190282
Alignment:
Q  3 tgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaa 102  Q
    |||||||||| ||||| |||||| ||| | ||||||| ||||  |||||||  | |||||||||||||||| | || |||||||| ||||||||||||||    
T  2190468 tgctattctcgcaacatattttgctcgcgcccaactgtacttttcaaaatacccttgcgtgagttaactcatgtaagtgttaatttccagcgtgagttaa 2190369  T
Q  103 ctcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgcgcagattttaacacttgcgttacttaactaa 189  Q
    || | |||||  |||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||| |||  ||||||||    
T  2190368 cttacacaagcgttaattccagcgtgagttaagttgtgcagcgcatgttaagatgcacagattttaaaacttgagttgtttaactaa 2190282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 3 - 145
Target Start/End: Original strand, 3039974 - 3040114
Alignment:
Q  3 tgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaa 102  Q
    ||||||||| ||||||||||||||||| || |||||||||||   ||||||| ||||||  | ||||||||||||| |||||||||||| ||||||||||    
T  3039974 tgctattcttccaacacattttgttcgcgttcaactgaactttttaaaatatccatgcg--atttaactcacgcaagtgttaattcccatcgtgagttaa 3040071  T
Q  103 ctcatacaagatttaattccagcgtgagttaagttgcgcagcg 145  Q
    |||| ||||||||||||| ||||||||||| ||||||||||||    
T  3040072 ctcacacaagatttaatttcagcgtgagttgagttgcgcagcg 3040114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 198 - 363
Target Start/End: Complemental strand, 20360063 - 20359896
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatt 297  Q
    ||||||| ||||||| ||||||||| | |||||||||| ||||||||| || ||||||||||||| |||| ||||||||||||||||| |||| ||||||    
T  20360063 gggaaatgatagatagagtgacaaactgtatcaagaaagtttcaagacggtatatttgctaacacctttctttaattacacaccattatctcctttgatt 20359964  T
Q  298 tccgccaga--taacaaatttaattgattgagacattttcttgataaattcttgataaaaactctcta 363  Q
    || |  | |  ||||| ||||||||||  |||||||||||||||| |||||||||||||| |||||||    
T  20359963 tcaggaaaatttaacagatttaattgaccgagacattttcttgatcaattcttgataaaatctctcta 20359896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 198 - 328
Target Start/End: Original strand, 34280064 - 34280194
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatt 297  Q
    ||||||| ||||||||||||||| |||||||||| || |||| ||| ||||||||||| |||||  |||||||||||||| ||||||| || |||| |||    
T  34280064 gggaaatgatagatacagtgacagaatttatcaataatattttaagtcagtgtatttgttaacatctttccttaattacataccattatcttccttaatt 34280163  T
Q  298 tccgccagataacaaatttaattgattgaga 328  Q
    ||||||| |||||||||||||||||||||||    
T  34280164 tccgccaaataacaaatttaattgattgaga 34280194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 17066894 - 17066797
Alignment:
Q  92 gcgtgagttaactcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgcgcagattttaacacttgcgttacttaactaa 189  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||| |||||  ||| ||||||||| |||||||||||||||||||| ||||||||    
T  17066894 gcgtgagttaactcatgcaagtgttaattccagcgtgagttaagttgtgcagcagatgctaagatgcgtagattttaacacttgcgttaattaactaa 17066797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 197 - 356
Target Start/End: Complemental strand, 24402196 - 24402035
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaag--acagtgtatttgctaacacttttccttaattacacaccattacctcccttg 294  Q
    |||||||| ||||||||| |||||||||||||||||||||||| ||   ||| |||||| | ||||| ||||||||||||||||| |||| | ||| |||    
T  24402196 agggaaatgatagatacaatgacaaaatttatcaagaaaattttaaagtacattgtatt-gttaacagttttccttaattacacatcattgc-tcctttg 24402099  T
Q  295 -atttccg-ccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaa 356  Q
     ||||||| ||| |||||||||||| ||| ||||||  ||||||||||||||||||||||||||    
T  24402098 tatttccgaccaaataacaaatttatttggttgagatcttttcttgataaattcttgataaaaa 24402035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 58 - 172
Target Start/End: Complemental strand, 20419594 - 20419480
Alignment:
Q  58 tgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaatt-ccagcgtgagttaagttgcgcagcgcatgttaagat 156  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||  ||||  |||||| ||| ||||||||||||||| || |||||||||||      
T  20419594 tgcgtgagttaactcacgcaagtgttaattcc-agcgtgagttaactcacgcaagtgttaatttccaacgtgagttaagttgcccaacgcatgttaagta 20419496  T
Q  157 gcgcagattttaacac 172  Q
    ||||||||||||||||    
T  20419495 gcgcagattttaacac 20419480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 7547366 - 7547291
Alignment:
Q  247 gtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgat 323  Q
    |||||||||||||||| |||||||||||||| | ||||| || |||||||||||| || ||||||||||| ||||||    
T  7547366 gtgtatttgctaacacatttccttaattacaaatcattatct-ccttgatttccgtcaaataacaaatttgattgat 7547291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 17066945 - 17066852
Alignment:
Q  8 ttctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaa 102  Q
    ||||| |||||||||| | |||  ||||||||||||| | ||||||  | |||||||||||||||| |||| |||||||| ||||||||||||||    
T  17066945 ttctcgcaacacatttcgctcgcatccaactgaactttctaaaatacccctgcgtgagttaactcatgcaagtgttaatt-ccagcgtgagttaa 17066852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 371
Target Start/End: Complemental strand, 21259301 - 21259195
Alignment:
Q  264 tttccttaattacacaccattacctcccttgatttccg-ccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctct 362  Q
    ||||||||||||||| |||||||||||||||||||||| ||||  |  ||||||||||   | | || ||||||| || |||||||||||||||||||||    
T  21259301 tttccttaattacac-ccattacctcccttgatttccgtccag-catgaaatttaattagcttaaaccttttctttatcaattcttgataaaaactctct 21259204  T
Q  363 aggtaaata 371  Q
    || ||||||    
T  21259203 agataaata 21259195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 9666899 - 9666951
Alignment:
Q  223 atttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaatta 275  Q
    ||||||||||||||||| ||||  |||||||||||||||| ||||| ||||||    
T  9666899 atttatcaagaaaattttaagatggtgtatttgctaacacctttccataatta 9666951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 25994911 - 25994958
Alignment:
Q  59 gcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcat 107  Q
    |||||||||||||||||||| ||||||||| | ||||||||||||||||    
T  25994911 gcgtgagttaactcacgcaagtgttaattctc-gcgtgagttaactcat 25994958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 20419403 - 20419474
Alignment:
Q  1 tctgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactca 73  Q
    |||||||||||||||| |||||||| | | ||||||||||| |  | |||||||||||  |||||||||||||    
T  20419403 tctgctattctcccaatacattttgcttg-gtccaactgaaatatcgaaaatattcatatgtgagttaactca 20419474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 1e-70; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 197 - 376
Target Start/End: Complemental strand, 20143119 - 20142940
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgat 296  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| |||||||| |||||||    
T  20143119 agggaaatgatagatacagtgacaaaatttatcaagaaaatttcaagatagtgtattttctaacacctttccttaattacacatcattaccttccttgat 20143020  T
Q  297 ttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    |||||||| |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  20143019 ttccgccaaataataaatttaattggttgagactttttcttgataaattcttgataaaaactctctagataaataacaat 20142940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 206 - 376
Target Start/End: Original strand, 13716676 - 13716846
Alignment:
Q  206 atagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccag 305  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||| ||||||||| ||||||| |||||     
T  13716676 atagatacagtgacaaaatttatcaagaaaatttcaaaacagtgtatttgctaacaccttttcttaattacacactattacctcctttgattttcgccaa 13716775  T
Q  306 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    || ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| ||||    
T  13716776 atcacaaatttaattggttgagactttttcttgataaattcttgataaaaactctctagataaatagcaat 13716846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 201 - 376
Target Start/End: Original strand, 19945685 - 19945860
Alignment:
Q  201 aaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttcc 300  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |  |||||||||||||||||||||||||||||| ||||||    
T  19945685 aaatgatagatacagtgacaaaatttatcaagaaaattttaagacagtgtatttgttaatatctttccttaattacacaccattacctcccttaatttcc 19945784  T
Q  301 gccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    | || |||||||||||||||||  |||||||||| || |||||||||| ||||||||||||||  |||||| ||||    
T  19945785 gtcaaataacaaatttaattgaccgagacatttttttaataaattcttaataaaaactctctaaataaatagcaat 19945860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 206 - 343
Target Start/End: Complemental strand, 27007311 - 27007174
Alignment:
Q  206 atagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccag 305  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||     
T  27007311 atagatacagtgacaaaatttatcaagaaaattttaagacagtgtatttgttaacacttttccttaaatacacactattacctcccttgatttccgccaa 27007212  T
Q  306 ataacaaatttaattgattgagacattttcttgataaa 343  Q
    |||||||||||| ||| |||||||| ||||||||||||    
T  27007211 ataacaaatttatttggttgagacaatttcttgataaa 27007174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 197 - 343
Target Start/End: Complemental strand, 14131307 - 14131161
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgat 296  Q
    |||||||| ||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| |||||||||||||||||||||| ||| ||||||    
T  14131307 agggaaatgatagatacagtgacaaaatttatgaagaaaattttaagatagtgtatttgctaacacatttccttaattacacaccattatctcgcttgat 14131208  T
Q  297 ttccgccagataacaaatttaattgattgagacattttcttgataaa 343  Q
    |||||||| |||||| ||||||||| |  ||||||||||||||||||    
T  14131207 ttccgccaaataacagatttaattggtccagacattttcttgataaa 14131161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 200 - 373
Target Start/End: Original strand, 38320153 - 38320333
Alignment:
Q  200 gaaataatagatacagtgacaaaatttatcaagaaaa-------tttcaagacagtgtatttgctaacacttttccttaattacacaccattacctccct 292  Q
    ||||| |||||||||||| ||||||||||||||||||       ||| ||||||||||||||| |||||| |||||||| ||||||| |||||||||| |    
T  38320153 gaaatgatagatacagtggcaaaatttatcaagaaaaaagaaaattttaagacagtgtatttgataacacatttccttatttacacatcattacctcctt 38320252  T
Q  293 tgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataac 373  Q
    |||||||| ||| |||||||||||||||| |||| |  |||||||||||||||||||||||||||||||||| ||||||||    
T  38320253 tgatttccaccaaataacaaatttaattggttgaaaacttttcttgataaattcttgataaaaactctctagataaataac 38320333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 197 - 371
Target Start/End: Original strand, 32975977 - 32976153
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccatt--acctcccttg 294  Q
    |||||||| |||||||||  ||||| || ||||||||||||||||| ||||||||||| ||||||| ||| |||||||||| ||||||  |||| | |||    
T  32975977 agggaaatgatagatacatcgacaatatgtatcaagaaaatttcaaaacagtgtatttactaacaccttttcttaattacataccattttaccttctttg 32976076  T
Q  295 atttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaata 371  Q
    ||||||| || |||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||| ||||||    
T  32976077 atttccgacaaataacaaatttaattggttgagacattttcttgatcaattcttgataaaatctctctagataaata 32976153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 59 - 185
Target Start/End: Original strand, 24582502 - 24582628
Alignment:
Q  59 gcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgc 158  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||  ||||  |||||| ||||||||||||||||||||| |||||||||||||||    
T  24582502 gcgtgagttaactcactcaagtgttaattcccagcgtgagttaactcacgcaagtgttaattacagcgtgagttaagttgcgcatcgcatgttaagatgc 24582601  T
Q  159 gcagattttaacacttgcgttacttaa 185  Q
    |||||||||||||| ||| ||||||||    
T  24582602 gcagattttaacacatgcattacttaa 24582628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 233 - 376
Target Start/End: Complemental strand, 37714538 - 37714395
Alignment:
Q  233 aaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattgagacatt 332  Q
    ||||||| ||| |||||||||||||||||| |||||||||||||||||||||| |||| |||||||||  || |||||||||||||||| |||| || ||    
T  37714538 aaaattttaaggcagtgtatttgctaacacctttccttaattacacaccattatctcctttgatttccatcaaataacaaatttaattggttgatacctt 37714439  T
Q  333 ttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    ||||||||||||  |||||||||||||||||| |||||| ||||    
T  37714438 ttcttgataaatcattgataaaaactctctagataaatagcaat 37714395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 230 - 360
Target Start/End: Complemental strand, 35457518 - 35457389
Alignment:
Q  230 aagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattgagac 329  Q
    |||||||||| |||| ||| |||||| |||||| ||||||||||||||||||||||||||| ||||||||||| | |||| |||||||||||||||| ||    
T  35457518 aagaaaattttaagatagtatatttgttaacacatttccttaattacacaccattacctcctttgatttccgctaaataataaatttaattgattgaaac 35457419  T
Q  330 attttcttgataaattcttgataaaaactct 360  Q
     ||||||| ||||||||||||||||||||||    
T  35457418 cttttctt-ataaattcttgataaaaactct 35457389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 197 - 358
Target Start/End: Complemental strand, 3168046 - 3167886
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgat 296  Q
    |||||||| ||||||| ||||||||||||||||||||||||||  | | ||| ||||||||||||| |||| ||||||||||| |||||||| | |||||    
T  3168046 agggaaatgatagata-agtgacaaaatttatcaagaaaatttttaaatagtatatttgctaacacctttctttaattacacatcattaccttctttgat 3167948  T
Q  297 ttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaact 358  Q
    ||||| || |||| ||||||||||| ||||||| ||||||| | |||||||| |||||||||    
T  3167947 ttccgacaaataataaatttaattggttgagaccttttcttaacaaattcttaataaaaact 3167886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 217 - 373
Target Start/End: Original strand, 31645074 - 31645231
Alignment:
Q  217 gacaaaatttatcaagaaaatttcaagacagtgtatttgctaacact-tttccttaattacacaccattacctcccttgatttccgccagataacaaatt 315  Q
    |||||||||||||| |||||||| |||| | |||||||||||||||  ||| |||||||||||| |||||| |  |||||||||||||| || | |||||    
T  31645074 gacaaaatttatca-gaaaattttaagagaatgtatttgctaacacccttttcttaattacacatcattacgtttcttgatttccgccaaattaaaaatt 31645172  T
Q  316 taattgattgagacattttctt-gataaattcttgataaaaactctctaggtaaataac 373  Q
    |||||| || ||||||||| || ||||||||||||||||||||||||||| ||||||||    
T  31645173 taattggttaagacattttttttgataaattcttgataaaaactctctagataaataac 31645231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 210 - 362
Target Start/End: Complemental strand, 4434438 - 4434283
Alignment:
Q  210 atacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattac---ctcccttgatttccgccaga 306  Q
    ||||||||||||| | ||| ||||||||||||| ||| | ||||||| ||||| ||| |||||||||||||||||||   |||||||||||| || || |    
T  4434438 atacagtgacaaactgtattaagaaaatttcaaaacaatatatttgccaacacatttacttaattacacaccattacctcctcccttgattttcggcaaa 4434339  T
Q  307 taacaaatttaattgattgagacattttcttgataaattcttgataaaaactctct 362  Q
    |||||||||||||||| || ||| |||||||||| ||||||| |||||| ||||||    
T  4434338 taacaaatttaattgactgggaccttttcttgatcaattcttaataaaatctctct 4434283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 198 - 376
Target Start/End: Original strand, 37899471 - 37899639
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatt 297  Q
    ||||||| ||||||||||||||||||| |||||||||| |||  ||||| ||||||| ||||||| ||||| |||||||          |||| ||||||    
T  37899471 gggaaatgatagatacagtgacaaaatgtatcaagaaattttttagacaatgtatttactaacacatttccataattac----------ctcctttgatt 37899560  T
Q  298 tccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    | || || || ||||||||||||| |||| || ||||||||||||||| |||||||||||||||||| |||||| ||||    
T  37899561 ttcgacaaatcacaaatttaattggttgaaaccttttcttgataaatttttgataaaaactctctagataaatagcaat 37899639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 198 - 364
Target Start/End: Complemental strand, 27407571 - 27407406
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatt 297  Q
    ||||||| ||||||||||||||||| |  |  || ||||||| |||| | |||||||||||| || |||||||||||||||| ||||| || ||||||||    
T  27407571 gggaaatgatagatacagtgacaaactcaag-aacaaaattttaagatactgtatttgctaatacatttccttaattacacagcattatcttccttgatt 27407473  T
Q  298 tccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctag 364  Q
    ||||  | ||||||||||||||||  ||| |  |||||||||| ||||||||||||| |||||||||    
T  27407472 tccggtaaataacaaatttaattggctgatatcttttcttgatcaattcttgataaacactctctag 27407406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 198 - 279
Target Start/End: Complemental strand, 31264908 - 31264827
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacaca 279  Q
    ||||||| ||||||||||||||||||||||||||  |||||| |||| ||||||||||||||||||||||||||||||||||    
T  31264908 gggaaatgatagatacagtgacaaaatttatcaaacaaattttaagatagtgtatttgctaacacttttccttaattacaca 31264827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 218 - 301
Target Start/End: Complemental strand, 31845544 - 31845461
Alignment:
Q  218 acaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccg 301  Q
    ||||| ||||||||||||||||  ||||||||||||||||||||  || ||||||||||||||||||||||| |||||||||||    
T  31845544 acaaattttatcaagaaaatttttagacagtgtatttgctaacatcttaccttaattacacaccattacctctcttgatttccg 31845461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 272 - 376
Target Start/End: Complemental strand, 24184047 - 24183943
Alignment:
Q  272 attacacaccattacctcccttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaata 371  Q
    ||||||||||||||||||  |||| ||||| || |||| |||||||||||  ||| || ||||||||||||||| |  ||||||||||||||  |||| |    
T  24184047 attacacaccattacctctattgagttccggcaaataataaatttaattggctgaaaccttttcttgataaattatgaataaaaactctctaaataaaca 24183948  T
Q  372 acaat 376  Q
    |||||    
T  24183947 acaat 24183943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 24582393 - 24582465
Alignment:
Q  1 tctgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactca 73  Q
    |||||| |||||||||||||||||| | | || ||||| ||||| ||||||||||  ||||||||||||||||    
T  24582393 tctgctcttctcccaacacattttgcttgcgttcaactaaactttccaaaatattactgcgtgagttaactca 24582465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 24582470 - 24582545
Alignment:
Q  59 gcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaatt-ccagcgtgagttaa 134  Q
    |||||| ||||||||||||| |||||||| ||||||||||||||||||  ||||  |||||| ||||||||||||||    
T  24582470 gcgtgacttaactcacgcaagtgttaatt-ccagcgtgagttaactcactcaagtgttaattcccagcgtgagttaa 24582545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 314
Target Start/End: Original strand, 5881435 - 5881505
Alignment:
Q  244 acagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaat 314  Q
    ||||| |||||||||| || |||||||||||||||| |||||| | ||||||||||||  | |||||||||    
T  5881435 acagtatatttgctaatacctttccttaattacacatcattacattccttgatttccggtaaataacaaat 5881505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 34233648 - 34233611
Alignment:
Q  40 aacttcccaaaatattcatgcgtgagttaactcacgca 77  Q
    |||||||||||||| |||||||||||||||||||||||    
T  34233648 aacttcccaaaatactcatgcgtgagttaactcacgca 34233611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 25770449 - 25770376
Alignment:
Q  12 cccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaa 85  Q
    |||||||||||||| || | | |||||||| |||  |||||  |||||||||||||||||||||| | ||||||    
T  25770449 cccaacacattttgctcattttcaactgaaattctaaaaatgctcatgcgtgagttaactcacgctagtgttaa 25770376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 1e-64; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 195 - 376
Target Start/End: Complemental strand, 35413179 - 35412998
Alignment:
Q  195 atagggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttg 294  Q
    |||||||||| ||||||| | ||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| |||||||||||||    
T  35413179 atagggaaatgatagatataatgacaaaatttatcaagaaaatttcaagagagtgtatttgttaacacctttccttaattacacactattacctcccttg 35413080  T
Q  295 atttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    ||||||| || |||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||| |||||| ||||    
T  35413079 atttccgtcaaataacaaatttaattggttgagaccttttcttgataaattattgataaaaactctctagataaatagcaat 35412998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 217 - 375
Target Start/End: Complemental strand, 10061723 - 10061565
Alignment:
Q  217 gacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaattt 316  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||| | || |||||||||||    
T  10061723 gacaaaatttatcaagaaaatttcaagacagtttatttgctaacacatttccttaattacacatcattacctcccttgatttctgtcaaataacaaattt 10061624  T
Q  317 aattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaa 375  Q
    ||||| ||||||| |||| ||||||||||||||||||||||||||||| ||||||||||    
T  10061623 aattggttgagacttttttttgataaattcttgataaaaactctctagataaataacaa 10061565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 196 - 371
Target Start/End: Complemental strand, 29657516 - 29657341
Alignment:
Q  196 tagggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttga 295  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||| ||||    
T  29657516 tagggaaatgatagatacagtgacaaattttatcaagaaaatttcaagacagtgtatttgctaacacctttccttaattacatatcattacctcctttga 29657417  T
Q  296 tttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaata 371  Q
    ||| || || |||||||||||||||| ||||||| |||||||||  |||| ||||||||| |||||||| ||||||    
T  29657416 ttttcggcaaataacaaatttaattggttgagaccttttcttgaccaatttttgataaaatctctctagataaata 29657341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 196 - 372
Target Start/End: Original strand, 35149620 - 35149796
Alignment:
Q  196 tagggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttga 295  Q
    |||| |||| |||| ||||||||||||||||||||| |||||||||||| | ||||||||||||||| |||||||||||| ||| ||||| |||||||||    
T  35149620 taggaaaatgataggtacagtgacaaaatttatcaaaaaaatttcaagagaatgtatttgctaacacctttccttaattatacatcattatctcccttga 35149719  T
Q  296 tttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataa 372  Q
    |||  | || |||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||| |||||||    
T  35149720 tttatgtcaaataacaaatttaattggttaagatattttcttgataaattcttgataaaaactctctagataaataa 35149796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 229 - 376
Target Start/End: Original strand, 43537134 - 43537284
Alignment:
Q  229 caagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattgaga 328  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||  |||||    
T  43537134 caagaaaatttcaagacagtgtatttgttaacacatttctttaattacacaccattacctcccttgatttccggcaaataacaaatttaattggctgaga 43537233  T
Q  329 cattttcttgataaattcttgat---aaaaactctctaggtaaataacaat 376  Q
    | |||||||||| ||||||||||   ||||||||||||| |||||||||||    
T  43537234 ccttttcttgattaattcttgataaaaaaaactctctagataaataacaat 43537284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 210 - 364
Target Start/End: Complemental strand, 26470082 - 26469928
Alignment:
Q  210 atacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataa 309  Q
    ||||||||| |||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||| || | ||||||| |   | ||||    
T  26470082 atacagtgataaaatttatcaagaaaattttaaaacagtgtatttgctaacacctttccttaattacacaccattatcttctttgattttcattaaataa 26469983  T
Q  310 caaatttaattgattgagacattttcttgataaattcttgataaaaactctctag 364  Q
     ||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  26469982 taaatttaatttgttgagacattttcttgataaattcttgataaaaactctctag 26469928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 235 - 376
Target Start/End: Complemental strand, 21540187 - 21540046
Alignment:
Q  235 aatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattgagacatttt 334  Q
    ||||||||||||||||||||| |||||| |||| ||||||||||  ||||| ||||||| |||||||||| ||||||||||||||||  |||||||||||    
T  21540187 aatttcaagacagtgtatttgttaacacctttctttaattacacttcattatctcccttaatttccgccaaataacaaatttaattggctgagacatttt 21540088  T
Q  335 cttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    |||||||| ||||||||||||||||||||  |||||| ||||    
T  21540087 cttgataatttcttgataaaaactctctaaataaatagcaat 21540046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 197 - 376
Target Start/End: Complemental strand, 48852794 - 48852615
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgat 296  Q
    |||||||| |||||| ||||||||||||||||||| ||| ||| || ||| |||||||| ||||| |||| |||||||| ||| ||||| || | |||||    
T  48852794 agggaaatgatagatccagtgacaaaatttatcaaaaaatttttaaaacaatgtatttgttaacattttttcttaattatacatcattatcttctttgat 48852695  T
Q  297 ttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    ||   | | ||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||| |||||||||||    
T  48852694 tttttctaaataacaaatttaattgattaaaacatttttttgataaattcttaataaaaactctctagataaataacaat 48852615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 239 - 376
Target Start/End: Original strand, 23906605 - 23906742
Alignment:
Q  239 tcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattgagacattttcttg 338  Q
    |||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||  | || ||||||||||||||||  ||| || ||||||||    
T  23906605 tcaagacaatgtatttgctaacacctttctttaattacacaccattacctctcttgatttgtggcaaataacaaatttaattggctgaaactttttcttg 23906704  T
Q  339 ataaattcttgataaaaactctctaggtaaataacaat 376  Q
    || |||||||||||||| || ||||| |||||| ||||    
T  23906705 atcaattcttgataaaacctttctagataaatagcaat 23906742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 242 - 376
Target Start/End: Complemental strand, 11470130 - 11469995
Alignment:
Q  242 agacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattgagacattttcttgata 341  Q
    ||||| |||||||  |||||  ||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||| || ||| ||||||||||||    
T  11470130 agacaatgtatttcttaacatattttcttaattacacatcattacctcccttgatttccgccaaataacaaatttaattggttaagatattttcttgata 11470031  T
Q  342 aattcttgat-aaaaactctctaggtaaataacaat 376  Q
    ||||||| || |||||||||||   |||||||||||    
T  11470030 aattcttaataaaaaactctcttaataaataacaat 11469995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 34 - 171
Target Start/End: Original strand, 19062866 - 19063002
Alignment:
Q  34 caactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaattccagcgtgagtta 133  Q
    |||| |||||| | ||||||| | ||| |||||||| |||||||| |||||||| | |||||||||||||||| |||||  ||||||||||| |||||||    
T  19062866 caacggaactttctaaaatatccctgcatgagttaattcacgcaagtgttaatttc-agcgtgagttaactcagacaagtgttaattccagcatgagtta 19062964  T
Q  134 agttgcgcagcgcatgttaagatgcgcagattttaaca 171  Q
    | ||  ||||||||||||||||||||||||||||||||    
T  19062965 aattttgcagcgcatgttaagatgcgcagattttaaca 19063002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 32306513 - 32306405
Alignment:
Q  33 ccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaattccagcgtgagtt 132  Q
    |||||||||||| ||||||||| | |||||||||||||||| |||| ||| |||||| ||||||||||||||||  ||||  |||||| |||||||||||    
T  32306513 ccaactgaactttccaaaatatccctgcgtgagttaactcatgcaagtgtcaattcc-agcgtgagttaactcacgcaagtgttaatttcagcgtgagtt 32306415  T
Q  133 aagttgcgca 142  Q
    ||||||||||    
T  32306414 aagttgcgca 32306405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 201 - 293
Target Start/End: Original strand, 9113421 - 9113514
Alignment:
Q  201 aaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgta-tttgctaacacttttccttaattacacaccattacctccctt 293  Q
    |||| ||||||||||||| ||||| |||||||||||||| |||| |||||| |||||||| || |||||||||||||| | |||||||||||||    
T  9113421 aaatgatagatacagtgataaaatatatcaagaaaattttaagagagtgtattttgctaaaacctttccttaattacagatcattacctccctt 9113514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 292 - 360
Target Start/End: Complemental strand, 49313663 - 49313595
Alignment:
Q  292 ttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactct 360  Q
    |||||||||| |  ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  49313663 ttgatttccgactaataacaaatttaattaattgagacattttcttgatcaattcttgataaaaactct 49313595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 8360166 - 8360229
Alignment:
Q  128 gagttaagttgcgcagcgcatgttaagatgcgcagattttaacacttgcgttacttaactaata 191  Q
    |||||||||||||||  |||||||||||||||| ||||||||||| ||||||||||||||||||    
T  8360166 gagttaagttgcgcacagcatgttaagatgcgctgattttaacacatgcgttacttaactaata 8360229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 21258292 - 21258382
Alignment:
Q  33 ccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaattccag 124  Q
    |||||||||||||||||||||    ||||||||||||||||||||| |||||||| |||||||||||||||| | |||||  ||||||||||    
T  21258292 ccaactgaacttcccaaaatacctctgcgtgagttaactcacgcaagtgttaatt-ccagcgtgagttaactaagacaagtgttaattccag 21258382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 343
Target Start/End: Original strand, 13085089 - 13085144
Alignment:
Q  288 tcccttgatttccgccagataacaaatttaattgattgagacattttcttgataaa 343  Q
    |||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||    
T  13085089 tcccttgatttccggcaaataacaaatttaattgactgagatattttcttgataaa 13085144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 298
Target Start/End: Complemental strand, 4684599 - 4684518
Alignment:
Q  217 gacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgattt 298  Q
    ||||||||  |||||||||||||  | |||   ||||||||||||| |||||||||||||||||||||| |||| |||||||    
T  4684599 gacaaaatgcatcaagaaaattttcaaacaacatatttgctaacacctttccttaattacacaccattatctcctttgattt 4684518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 13085032 - 13085076
Alignment:
Q  196 tagggaaataatagatacagtgacaaaatttatcaagaaaatttc 240  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||    
T  13085032 tagggaaataatagatacaatgacaaaatgtatcaagaaaatttc 13085076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 29694020 - 29694095
Alignment:
Q  115 ttaattccagcgtgagttaagttgcgcagcgcatgttaagatgcgcagattttaacacttgcgttacttaactaata 191  Q
    ||||||||||  |||||||||||| ||||| |||||||||| ||||| ||||| |||| || |||||||||||||||    
T  29694020 ttaattccagtatgagttaagttgtgcagcacatgttaaga-gcgcacattttgacacctgtgttacttaactaata 29694095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 49402047 - 49401987
Alignment:
Q  201 aaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaaca 261  Q
    |||| |||||||||||||||||||||||||| || |||||||  || ||||||||||||||    
T  49402047 aaatgatagatacagtgacaaaatttatcaaaaagatttcaaaccaatgtatttgctaaca 49401987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 34475856 - 34475804
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgt 250  Q
    ||||||| || |||||||||||||||| ||| |||||||||| ||||||||||    
T  34475856 gggaaatgatggatacagtgacaaaatgtattaagaaaattttaagacagtgt 34475804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 36816970 - 36817014
Alignment:
Q  33 ccaactgaacttcccaaaatattcatgcgtgagttaactcacgca 77  Q
    ||||||||||||||||||||| ||  |||||||||||||||||||    
T  36816970 ccaactgaacttcccaaaatactcccgcgtgagttaactcacgca 36817014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 44958464 - 44958524
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaa 259  Q
    |||||||| |||||||  |||||||||| ||| |||||||||| |||| ||||||||||||||    
T  44958464 agggaaatgatagata--gtgacaaaatgtattaagaaaatttgaagagagtgtatttgctaa 44958524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 8360104 - 8360157
Alignment:
Q  1 tctgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatat 54  Q
    |||||| |||||||||||||||||| ||| |  ||||||||||||| |||||||    
T  8360104 tctgctcttctcccaacacattttgctcgcgctcaactgaacttcctaaaatat 8360157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 33077784 - 33077719
Alignment:
Q  251 atttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaattt 316  Q
    |||||||||||| |||  ||||||||||| ||||||||| |||||||| || || ||| |||||||    
T  33077784 atttgctaacacatttatttaattacacatcattacctctcttgattttcggcaaatatcaaattt 33077719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 37919799 - 37919766
Alignment:
Q  56 catgcgtgagttaactcacgcaaatgttaattcc 89  Q
    |||||||||||||||||||||| |||||||||||    
T  37919799 catgcgtgagttaactcacgcagatgttaattcc 37919766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 13085134 - 13085166
Alignment:
Q  344 ttcttgataaaaactctctaggtaaataacaat 376  Q
    ||||||||||||||||||||| |||||||||||    
T  13085134 ttcttgataaaaactctctagataaataacaat 13085166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 226 - 364
Target Start/End: Complemental strand, 47996800 - 47996661
Alignment:
Q  226 tatcaagaaaatttcaagacagtgtatttgct-aacacttttccttaattacacaccattacctcccttgatttcc-gccagataacaaatttaattgat 323  Q
    ||||| |||||||||  || ||| || ||||| ||||| ||| ||||||||||    |||||||||||| |||||| |||| |||| ||||||||||||     
T  47996800 tatcacgaaaatttctcgagagtataattgctcaacaccttttcttaattacatttgattacctcccttaatttccagcca-ataagaaatttaattgac 47996702  T
Q  324 tgagacattttcttgataaattcttgataaaaactctctag 364  Q
    ||| ||||||| | ||| ||||   ||||||||||||||||    
T  47996701 tgaaacattttttggatcaatttcggataaaaactctctag 47996661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 199 - 371
Target Start/End: Original strand, 32871711 - 32871884
Alignment:
Q  199 ggaaataatagatacagtgacaaaatttatcaagaaaatttc-aagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatt 297  Q
    |||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||    
T  32871711 ggaaatgatagatacaatgacaaaatttatcaagaaaatttctaagacagtgtatttactaacatttttccttaattacacactattacctcccttgatt 32871810  T
Q  298 tccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaata 371  Q
    |||| || |||||||||||||||| |||| || |||||||||||||||||||||||||||||||||| ||||||    
T  32871811 tccgtcaaataacaaatttaattggttgaaaccttttcttgataaattcttgataaaaactctctagataaata 32871884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 197 - 362
Target Start/End: Complemental strand, 34713652 - 34713487
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgat 296  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||| |||||| ||| ||||| ||||||||||||| |||||||||    
T  34713652 agggaaatgatagatacagtgacaaaatttatcaagaaaattttaagatagtgtatttgttaacaccttttcttaaatacacaccattacatcccttgat 34713553  T
Q  297 ttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctct 362  Q
    || ||||| |||||||||||||||  |||||||| |||||||||||||||||||||||||||||||    
T  34713552 tttcgccaaataacaaatttaattagttgagacaatttcttgataaattcttgataaaaactctct 34713487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 198 - 376
Target Start/End: Original strand, 6784660 - 6784838
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatt 297  Q
    ||||||| ||||||| |||||||||||  |||||||||||||| ||| ||||||||||||||||| ||| |||||||||||||||||| |||||||||||    
T  6784660 gggaaatgatagatatagtgacaaaatgcatcaagaaaatttcgagatagtgtatttgctaacaccttttcttaattacacaccattatctcccttgatt 6784759  T
Q  298 tccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    |||| || ||||||||||||||||  |||||  |||| |||||||||| |||||||||||||||||| |||||| ||||    
T  6784760 tccgacaaataacaaatttaattggctgagatcttttattgataaattgttgataaaaactctctagataaatagcaat 6784838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 220 - 376
Target Start/End: Original strand, 2130472 - 2130628
Alignment:
Q  220 aaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaat 319  Q
    ||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||| || |||||| ||||||||||||| ||||||||||||||    
T  2130472 aaaatttatcaagaaaatttcaaaacggtgtatttgctaacacctttccttaattacacacaatcacctcctttgatttccgccaaataacaaatttaat 2130571  T
Q  320 tgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    || ||||||  ||||||||||||||| || || |||||||||||| |||||||||||    
T  2130572 tggttgagattttttcttgataaattttttattaaaactctctagataaataacaat 2130628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 216 - 376
Target Start/End: Complemental strand, 28867317 - 28867157
Alignment:
Q  216 tgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatt 315  Q
    ||||||| | ||||||||||||||||||||| |||||||||||| || |||||||||||||| || ||||||||| |||||||||  || ||||||||||    
T  28867317 tgacaaattgtatcaagaaaatttcaagacaatgtatttgctaaaacatttccttaattacatactattacctcctttgatttccaacaaataacaaatt 28867218  T
Q  316 taattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    ||||||||||| || ||||||| || |||||||||||||| |||| ||| |||||||||||    
T  28867217 taattgattgaaactttttcttaatcaattcttgataaaatctctttagataaataacaat 28867157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 198 - 312
Target Start/End: Original strand, 3855694 - 3855807
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatt 297  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||  ||||| |||||| |||    
T  3855694 gggaaatgatagatacagtgacaaaatttatcaagaaaatttcaagacagtgta-ttgctaacacctttccttaattacacattattacatcccttaatt 3855792  T
Q  298 tccgccagataacaa 312  Q
    |||| || |||||||    
T  3855793 tccgtcaaataacaa 3855807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 251 - 355
Target Start/End: Complemental strand, 6519337 - 6519233
Alignment:
Q  251 atttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttga 350  Q
    |||||||||| | ||| |||||||||||| |||||| ||| ||||||| || || ||||||||||||||||| ||||||||||||||||| |||| ||||    
T  6519337 atttgctaactcattttcttaattacacatcattacatcctttgattttcggcaaataacaaatttaattgactgagacattttcttgatcaatttttga 6519238  T
Q  351 taaaa 355  Q
    |||||    
T  6519237 taaaa 6519233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 226 - 377
Target Start/End: Complemental strand, 11301958 - 11301807
Alignment:
Q  226 tatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattg 325  Q
    |||||||||||||| || | ||||||||| ||||||  |||||||||||| | || |||||||  |||||||| ||  | |||||||||| |||||| ||    
T  11301958 tatcaagaaaattttaaaatagtgtatttcctaacatctttccttaattatatactattaccttgcttgattttcgagaaataacaaattcaattgactg 11301859  T
Q  326 agacattttcttgataaattcttgataaaaactctctaggtaaataacaatc 377  Q
    |||| ||||| |||| ||||||||||||||| ||||||  |||||| |||||    
T  11301858 agaccttttcatgatcaattcttgataaaaattctctatataaatagcaatc 11301807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 99 - 189
Target Start/End: Original strand, 24624901 - 24624991
Alignment:
Q  99 ttaactcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgcgcagattttaacacttgcgttacttaactaa 189  Q
    |||||||| |||||  ||||||||| | ||| ||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  24624901 ttaactcacacaagtgttaattccaacatgatttaagtttcgcagcgcatattaagatgcgcagattttaacacttgtgttacttaactaa 24624991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 163
Target Start/End: Original strand, 9863526 - 9863629
Alignment:
Q  59 gcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgc 158  Q
    |||||| ||||||||||||| |||||||||| || ||||||||||| |  ||||  |||||||||| ||||| ||||||||||| | |||||||| ||||    
T  9863526 gcgtgatttaactcacgcaagtgttaattcc-agtgtgagttaacttaggcaagtgttaattccagtgtgaggtaagttgcgcaacacatgttaaaatgc 9863624  T
Q  159 gcaga 163  Q
    |||||    
T  9863625 gcaga 9863629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 9863432 - 9863502
Alignment:
Q  35 aactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactca 106  Q
    ||||||||||  |||||||  | ||||||||||||||||| ||| |||||||| ||||||| ||||||||||    
T  9863432 aactgaacttttcaaaatacccctgcgtgagttaactcacacaagtgttaatt-ccagcgtcagttaactca 9863502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 9875844 - 9875776
Alignment:
Q  33 ccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaa 102  Q
    |||| ||||||| ||||||||    |||||||||||||||| |||| |||||||| ||||||||||||||    
T  9875844 ccaattgaactttccaaaatacctctgcgtgagttaactcaggcaagtgttaatt-ccagcgtgagttaa 9875776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 9875818 - 9875774
Alignment:
Q  92 gcgtgagttaactcatacaagatttaattccagcgtgagttaagt 136  Q
    |||||||||||||||  ||||  ||||||||||||||||||||||    
T  9875818 gcgtgagttaactcaggcaagtgttaattccagcgtgagttaagt 9875774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 4e-58; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 198 - 376
Target Start/End: Original strand, 38585046 - 38585224
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatt 297  Q
    ||||||| |||||| || |||||||||||||||||||||||||||  || |||||||||||||||||||| |||||||||||| ||||||||| ||||||    
T  38585046 gggaaatgatagatccaatgacaaaatttatcaagaaaatttcaaagcaatgtatttgctaacacttttctttaattacacacaattacctcctttgatt 38585145  T
Q  298 tccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    ||||||| || |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  38585146 tccgccaaatgacaaatttaattaattgaaacattttcttgataaattcttgataaaaactctctaaataaatatcaat 38585224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 195 - 360
Target Start/End: Complemental strand, 29414535 - 29414370
Alignment:
Q  195 atagggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttg 294  Q
    |||||||||| ||||||||  ||| ||||| ||||||||||||||||| |||||| ||||| |||||| |||||||||||| |||||||||||| |||||    
T  29414535 atagggaaatgatagataccttgataaaatatatcaagaaaatttcaaaacagtgcatttgttaacacctttccttaattaaacaccattaccttccttg 29414436  T
Q  295 atttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactct 360  Q
    |||| || || ||||||||||||||||  ||||||||||||||||| |||| ||||||||||||||    
T  29414435 attttcggcaaataacaaatttaattggctgagacattttcttgatcaatttttgataaaaactct 29414370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 200 - 376
Target Start/End: Original strand, 5718407 - 5718591
Alignment:
Q  200 gaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttc 299  Q
    ||||| ||||||||| ||||||| | |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  5718407 gaaatgatagatacaatgacaaactatatcaagaaaattttaagacagtgtatttgctaacacatttccttaattacacaccattaccttccttgatttc 5718506  T
Q  300 cgccagataacaaatttaattga--------ttgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    || || |||| ||||||||||||         |||||| |||||||||| |||||||||||||| ||||| || |||||| ||||    
T  5718507 cgacaaataataaatttaattgactaagagtctgagaccttttcttgatcaattcttgataaaatctctcaagataaataccaat 5718591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 200 - 318
Target Start/End: Complemental strand, 25124518 - 25124400
Alignment:
Q  200 gaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttc 299  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||||| ||||| ||| |||||||||    
T  25124518 gaaatgatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgttaataccttttcttaattacacatcattatctctcttgatttc 25124419  T
Q  300 cgccagataacaaatttaa 318  Q
    ||||| ||||||| |||||    
T  25124418 cgccaaataacaactttaa 25124400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 31271931 - 31271803
Alignment:
Q  61 gtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgcgc 160  Q
    ||||||||| |||| ||| || |||||  |||| ||||||||||||| ||||  ||||||||||||||||||||||||||||| |||||||||||||| |    
T  31271931 gtgagttaagtcacacaagtgctaattttcagcatgagttaactcatgcaagtcttaattccagcgtgagttaagttgcgcagtgcatgttaagatgcac 31271832  T
Q  161 agattttaacacttgcgttacttaactaa 189  Q
    ||||||||||| |||||||||||||||||    
T  31271831 agattttaacatttgcgttacttaactaa 31271803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 199 - 356
Target Start/End: Complemental strand, 33543494 - 33543341
Alignment:
Q  199 ggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgattt 298  Q
    |||||| ||||||||  |||||||||||||||||||||| |||||||||| |||||| |||||| |||  ||||||||||| ||||| ||||||||||||    
T  33543494 ggaaatgatagatac--tgacaaaatttatcaagaaaatatcaagacagtatatttgttaacacctttttttaattacaca-cattatctcccttgattt 33543398  T
Q  299 ccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaa 356  Q
    | |||| ||||||||||| |||| |||||||||||| || ||||||| ||||||||||    
T  33543397 cagccaaataacaaattttattggttgagacatttt-tttataaatttttgataaaaa 33543341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 226 - 328
Target Start/End: Original strand, 5686276 - 5686378
Alignment:
Q  226 tatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattg 325  Q
    ||||||||||||||||||| || |||||||||||||| |||| ||||||||| |  |||||||||||||||||||| || ||||||||||||||||||||    
T  5686276 tatcaagaaaatttcaagatagcgtatttgctaacacatttcattaattacatattattacctcccttgatttccggcaaataacaaatttaattgattg 5686375  T
Q  326 aga 328  Q
    |||    
T  5686376 aga 5686378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 200 - 376
Target Start/End: Original strand, 24068076 - 24068252
Alignment:
Q  200 gaaataatagatacagtgacaaaatttatcaagaaaatttcaagacag-tgtatttgctaacacttttccttaattacacaccattacctcccttgattt 298  Q
    ||||| ||||||||||||||||| | ||| |||||||| | |||||   ||||||| ||||||  |||||||||||||||||||| |||||| |||||||    
T  24068076 gaaatgatagatacagtgacaaactgtattaagaaaatgttaagacttctgtatttcctaacatctttccttaattacacaccatcacctcctttgattt 24068175  T
Q  299 ccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
      || | ||||||||||||||||  |||||| |||||| ||| |||||||||||||| |||||||| |||||| ||||    
T  24068176 tggcaa-ataacaaatttaattggctgagactttttctcgatcaattcttgataaaatctctctagataaatagcaat 24068252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 244 - 376
Target Start/End: Original strand, 36947229 - 36947363
Alignment:
Q  244 acagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattgagaca--ttttcttgata 341  Q
    |||||||||||  |||||| |||| ||||||| ||| ||||||||||||| ||||  | |  ||||||||||||||||||||| |||  |||| || ||     
T  36947229 acagtgtatttattaacacatttctttaattatacatcattacctcccttcatttttggccaataacaaatttaattgattgatacattttttttttatc 36947328  T
Q  342 aattcttgataaaaactctctaggtaaataacaat 376  Q
    |||||||||||||| |||||||| |||||||||||    
T  36947329 aattcttgataaaatctctctagataaataacaat 36947363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 306 - 376
Target Start/End: Original strand, 29543678 - 29543748
Alignment:
Q  306 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    |||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| | |||||||||||    
T  29543678 ataacaaatttaattggttgagatattttcttgataaatttttgataaaaactctcttgataaataacaat 29543748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 234 - 343
Target Start/End: Complemental strand, 26415666 - 26415557
Alignment:
Q  234 aaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattgagacattt 333  Q
    |||||| |||| ||| |||||||||| || |||||||||||||||| ||||| |||  || ||||||| || |||| ||||||||||| ||||||| |||    
T  26415666 aaattttaagatagtatatttgctaatacctttccttaattacacatcattatctcttttaatttccgtcaaataataaatttaattggttgagaccttt 26415567  T
Q  334 tcttgataaa 343  Q
    ||||||||||    
T  26415566 tcttgataaa 26415557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 376
Target Start/End: Complemental strand, 35393823 - 35393712
Alignment:
Q  265 ttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctag 364  Q
    |||||||||||||| ||||||||||||||||||| ||    |||  ||||| |||||  | | ||  ||||||||| |||||||||||||||||||||||    
T  35393823 ttccttaattacaccccattacctcccttgattttcggtcaatatgaaattcaattggcttaaactctttcttgatcaattcttgataaaaactctctag 35393724  T
Q  365 gtaaataacaat 376  Q
     |||||| ||||    
T  35393723 ataaatagcaat 35393712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 343
Target Start/End: Original strand, 43063809 - 43063955
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgat 296  Q
    |||||||| |||||||||  |||||||| ||| ||||||||||  ||| | |||||||| ||| |  |||  ||||||| ||| ||||||||   |||||    
T  43063809 agggaaatgatagatacatcgacaaaatgtattaagaaaattttgagataatgtatttgttaatatctttttttaattatacatcattaccttatttgat 43063908  T
Q  297 ttccgccagataacaaatttaattgattgagacattttcttgataaa 343  Q
    || |  || |||| |||||||||||| |||||| |||| ||||||||    
T  43063909 tttcaacaaataataaatttaattgactgagacctttttttgataaa 43063955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 27459947 - 27459879
Alignment:
Q  8 ttctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgc 76  Q
    |||||||||||||||||| |||  |||| ||||| |||||||||||  ||||  |||||||||||||||    
T  27459947 ttctcccaacacattttgctcgcttccagctgaatttcccaaaatacccatgtttgagttaactcacgc 27459879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 36933377 - 36933414
Alignment:
Q  151 taagatgcgcagattttaacacttgcgttacttaacta 188  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  36933377 taagttgcgcagattttaacacttgcgttagttaacta 36933414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 4e-55; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 198 - 371
Target Start/End: Complemental strand, 1632958 - 1632786
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatt 297  Q
    ||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| ||||||    
T  1632958 gggaaatgatagatacagtgacaaaatttatcaaaaaaattccaagacagtgtatttgttaacacgtttctttaattacacaccattacctcctttgatt 1632859  T
Q  298 tccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaata 371  Q
    ||||| | |||||||||||||||  |||||||||||||||||| |||| |||||||||| ||||||| ||||||    
T  1632858 tccgcaaaataacaaatttaattagttgagacattttcttgat-aatttttgataaaaattctctagataaata 1632786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 214 - 343
Target Start/End: Complemental strand, 26443083 - 26442954
Alignment:
Q  214 agtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaa 313  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||  |||||||||||||||||||||||||||||||||||| ||||||||    
T  26443083 agtgacaaaatttatcaagaaaatttcaagacagtgtatttggtaacaccttttgttaattacacaccattacctcccttgatttccgccaaataacaaa 26442984  T
Q  314 tttaattgattgagacattttcttgataaa 343  Q
    |||||||| ||||||| |||||||||||||    
T  26442983 tttaattggttgagaccttttcttgataaa 26442954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 201 - 343
Target Start/End: Original strand, 18271924 - 18272066
Alignment:
Q  201 aaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttcc 300  Q
    |||| ||||||| |||||||||||||||||||||||||| |||| || |||||||||||||| |||| |||||||||||||||||||||| |||||||||    
T  18271924 aaatgatagatatagtgacaaaatttatcaagaaaattttaagatagagtatttgctaacacctttctttaattacacaccattacctccattgatttcc 18272023  T
Q  301 gccagataacaaatttaattgattgagacattttcttgataaa 343  Q
    |||| |||||||||||||||| |||||| ||||||||||||||    
T  18272024 gccaaataacaaatttaattggttgagatattttcttgataaa 18272066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 197 - 376
Target Start/End: Original strand, 45852891 - 45853070
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgat 296  Q
    |||||||| ||||||| ||||||||| | |||||||||||||| ||||| |||||||||||||||| ||| |||||||||| | ||||| ||||||||||    
T  45852891 agggaaatgatagataaagtgacaaactgtatcaagaaaattttaagaccgtgtatttgctaacaccttttcttaattacatatcattatctcccttgat 45852990  T
Q  297 ttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    | |   || |||| ||||||||||| ||||||| |||||||||| |||||||||||||| |||| ||| |||||||||||    
T  45852991 tgcaagcaaataataaatttaattggttgagactttttcttgattaattcttgataaaatctctatagataaataacaat 45853070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 196 - 372
Target Start/End: Original strand, 10593417 - 10593592
Alignment:
Q  196 tagggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttga 295  Q
    ||||||||  ||||||||||||| |||||||||||||||||||| |||| |||||||||| |||||| ||| | |||||| |||||||||  |  |||||    
T  10593417 tagggaaaagatagatacagtgataaaatttatcaagaaaattttaagatagtgtatttgttaacaccttttcctaattatacaccattagttttcttga 10593516  T
Q  296 tttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataa 372  Q
      ||||| | |||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||  |||||||    
T  10593517 -atccgctaaataacaaatttaattggttgagacattttctggataaattcttgataaaatctctctaaataaataa 10593592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 197 - 376
Target Start/End: Complemental strand, 34905997 - 34905818
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgat 296  Q
    |||||||| |||||||||   ||||| | |||| ||||||||| |||||||||||||||||||||| |||||||||||| ||| |||||||||| |||||    
T  34905997 agggaaattatagatacaacaacaaactgtatcgagaaaattttaagacagtgtatttgctaacacctttccttaattatacatcattacctcctttgat 34905898  T
Q  297 ttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    ||  | || ||||||||||||| ||  |||||||||||||| || |||||||||||||| || ||||| |||||| ||||    
T  34905897 ttttgacaaataacaaatttaactggctgagacattttcttaatcaattcttgataaaatctatctagataaatagcaat 34905818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 3 - 189
Target Start/End: Original strand, 44798655 - 44798841
Alignment:
Q  3 tgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaa 102  Q
    |||| |||||||||||||||||| ||| | | |||||||||||| ||||||    |  |||||||||||||||||  |||||||||||| ||||||||||    
T  44798655 tgctcttctcccaacacattttgctcgcgcctaactgaacttcctaaaataccgctaagtgagttaactcacgcacgtgttaattcccaacgtgagttaa 44798754  T
Q  103 ctcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgcgcagattttaacacttgcgttacttaactaa 189  Q
    ||||  ||||  ||| ||||||||||| |||| ||| |||||||||||||||||||  |||||||||||| ||| ||||||||||||    
T  44798755 ctcacgcaagtgttagttccagcgtgaattaaattgtgcagcgcatgttaagatgcatagattttaacacatgcattacttaactaa 44798841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 195 - 340
Target Start/End: Original strand, 1713933 - 1714078
Alignment:
Q  195 atagggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttg 294  Q
    |||||||||| ||| ||||||||| ||||||||| | |||||||||||||||||||||||  |||||  ||| |||||||| |||| |||| |||||||     
T  1713933 atagggaaatgataaatacagtgataaaatttattaggaaaatttcaagacagtgtatttattaacatattttcttaattatacacaattatctccctta 1714032  T
Q  295 atttccgccagataacaaatttaattgattgagacattttcttgat 340  Q
    |||||||||| ||||||||||||||||||||| | |||||||||||    
T  1714033 atttccgccaaataacaaatttaattgattgaaatattttcttgat 1714078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 39926443 - 39926572
Alignment:
Q  59 gcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgc 158  Q
    |||||| |||| |||||||| ||||||||  || ||||||||||||||   |||  |||||||||||||||||||||||||||||||||||||||||| |    
T  39926443 gcgtgaattaattcacgcaagtgttaattttcaacgtgagttaactcacgaaagtgttaattccagcgtgagttaagttgcgcagcgcatgttaagat-c 39926541  T
Q  159 gcagattttaacacttgcgttacttaactaa 189  Q
    |||||||||||||  ||||||||||||||||    
T  39926542 gcagattttaacatctgcgttacttaactaa 39926572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 209 - 356
Target Start/End: Complemental strand, 2672042 - 2671895
Alignment:
Q  209 gatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttga-tttccgccagat 307  Q
    |||| ||||||||||| |||||||||||||| ||||||||||||||| |||||  |||||||||||||||| ||||| ||||  ||| |||| |||| ||    
T  2672042 gataaagtgacaaaatgtatcaagaaaattttaagacagtgtatttgttaacatctttccttaattacacatcattatctcctctgattttcagcca-at 2671944  T
Q  308 aacaaatttaattgattgagacattttcttgataaattcttgataaaaa 356  Q
    ||||||||||||||  ||| || |||||||||| |||||||||||||||    
T  2671943 aacaaatttaattggctgacaccttttcttgatcaattcttgataaaaa 2671895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 197 - 334
Target Start/End: Complemental strand, 31192210 - 31192073
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgat 296  Q
    |||||||| ||||||||||||| ||| | |||||||||||||| ||||||| ||||||||||| |  ||||||||||||||||| |||| ||| ||| ||    
T  31192210 agggaaatgatagatacagtgataaactgtatcaagaaaattttaagacagggtatttgctaatatctttccttaattacacactattatctctcttaat 31192111  T
Q  297 ttccgccagataacaaatttaattgattgagacatttt 334  Q
    || |   | ||||||||||||||||||||||| |||||    
T  31192110 tttcaataaataacaaatttaattgattgagatatttt 31192073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 235 - 376
Target Start/End: Original strand, 48897675 - 48897816
Alignment:
Q  235 aatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattgagacatttt 334  Q
    ||||||||| |||| ||||||||||||  ||| ||||||||||||||||||  ||| ||||||| || || ||||||||||||| |   ||| |||||||    
T  48897675 aatttcaaggcagtctatttgctaacatcttttcttaattacacaccattatttccattgattttcgacaaataacaaatttaacttgctgaaacatttt 48897774  T
Q  335 cttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
     ||||| |||||||||||||| |||||||| |||||| ||||    
T  48897775 tttgattaattcttgataaaatctctctagataaatagcaat 48897816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 224 - 363
Target Start/End: Original strand, 40840633 - 40840771
Alignment:
Q  224 tttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgat 323  Q
    ||||||||||||||||||||| |||||||  | |||| |||| | || |||| ||| |||||||||| ||||||||||||| |||| ||||||||||  |    
T  40840633 tttatcaagaaaatttcaagagagtgtataggttaactcttt-ctttgattatacatcattacctcctttgatttccgccaaataataaatttaattagt 40840731  T
Q  324 tgagacattttcttgataaattcttgataaaaactctcta 363  Q
    ||| ||||||| |||||||||  |||||||||| ||||||    
T  40840732 tgaaacatttttttgataaatatttgataaaaattctcta 40840771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 8004285 - 8004359
Alignment:
Q  33 ccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcat 107  Q
    ||||||||||||| ||||||| || |||||||||||||||||| || |||||||| |||||| ||||||||||||    
T  8004285 ccaactgaacttctcaaaatactcttgcgtgagttaactcacgtaagtgttaatttccagcgcgagttaactcat 8004359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 22754811 - 22754718
Alignment:
Q  89 ccagcgtgagttaactcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgcgcagattttaacacttgcgttacttaacta 188  Q
    |||| |||||||||||||  ||||  |||||||||||||||||||||||||  ||||||||     |||||||||||||||||||| | |||||||||||    
T  22754811 ccagtgtgagttaactcacgcaagtgttaattccagcgtgagttaagttgc--agcgcatg-----atgcgcagattttaacacttacattacttaacta 22754719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 39926355 - 39926439
Alignment:
Q  3 tgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaatt 87  Q
    |||| |||||||||||||||||| ||| ||| ||||||||||| ||||||||   || ||||||||| |||||||| ||||||||    
T  39926355 tgctcttctcccaacacattttgctcgcgtcaaactgaacttctcaaaatatctctgtgtgagttaattcacgcaagtgttaatt 39926439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 22754873 - 22754818
Alignment:
Q  8 ttctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtg 63  Q
    |||||||||||||||||| ||| || ||||||||||||||||||||||| ||||||    
T  22754873 ttctcccaacacattttgctcgcgttcaactgaacttcccaaaatattcttgcgtg 22754818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 15043036 - 15042961
Alignment:
Q  1 tctgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgc 76  Q
    |||||| |||||||| |||||||||||||| ||||||  ||||||| ||||||  | |||||||||||||| ||||    
T  15043036 tctgctcttctcccatcacattttgttcgtttccaaccaaacttcctaaaatacccctgcgtgagttaacttacgc 15042961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 8004364 - 8004406
Alignment:
Q  147 atgttaagatgcgcagattttaacacttgcgttacttaactaa 189  Q
    |||| |||||| |||||||||||||||| ||||||||||||||    
T  8004364 atgtaaagatgtgcagattttaacacttacgttacttaactaa 8004406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 45004435 - 45004483
Alignment:
Q  53 attcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaa 102  Q
    |||| ||||||||||||||||||||| |||||||| ||| ||||||||||    
T  45004435 attcctgcgtgagttaactcacgcaagtgttaatt-ccaacgtgagttaa 45004483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 44798894 - 44798862
Alignment:
Q  9 tctcccaacacattttgttcgtgtccaactgaa 41  Q
    ||||||||||||||||||||| |||||||||||    
T  44798894 tctcccaacacattttgttcgcgtccaactgaa 44798862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 45004441 - 45004489
Alignment:
Q  92 gcgtgagttaactcatacaagatttaattccagcgtgagttaagttgcg 140  Q
    |||||||||||||||  ||||  ||||||||| ||||||||||||||||    
T  45004441 gcgtgagttaactcacgcaagtgttaattccaacgtgagttaagttgcg 45004489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 9e-53; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 198 - 371
Target Start/End: Original strand, 23611708 - 23611880
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatt 297  Q
    ||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||| |||||| ||| ||||||||||  |||||||||| |||||||    
T  23611708 gggaaatgatagatacaatgataaaatttatcaagaaaatttcaaaacagtgtatttgttaacacctttacttaattacat-ccattacctctcttgatt 23611806  T
Q  298 tccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaata 371  Q
    |||| || |||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  23611807 tccgtcaaataacaaatttaatttgttgagacattttcttgataaattcttaataaaaactctctagataaata 23611880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 34328743 - 34328560
Alignment:
Q  1 tctgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagtt 100  Q
    ||||||||| ||||||||  ||||||||| ||||||||||||||||||||||| || || || ||||||||||| ||| |||||||||| ||||||||||    
T  34328743 tctgctattttcccaacaagttttgttcgcgtccaactgaacttcccaaaatactc-tgtgttagttaactcacacaagtgttaattcc-agcgtgagtt 34328646  T
Q  101 aactcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgcgcagattttaacacttgcgttacttaac 186  Q
    ||||||  ||||  ||||||||| |||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  34328645 aactcacgcaagtgttaattccaacgtgagttaaattgcgcagcacatgttaagatgcacagattttaacacttgcgttacttaac 34328560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 197 - 343
Target Start/End: Original strand, 46413700 - 46413849
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgat 296  Q
    |||||||| ||||||||| ||||||||||||| || ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||    
T  46413700 agggaaatgatagatacattgacaaaatttattaaaaaaatttcaagacagtgtatttgttaacacctttccttaattacacatcattacctcccttgat 46413799  T
Q  297 ttccg---ccagataacaaatttaattgattgagacattttcttgataaa 343  Q
    |||||   ||| |||||||||||||||| |||||||||||||||||||||    
T  46413800 ttccgccaccaaataacaaatttaattggttgagacattttcttgataaa 46413849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 230 - 376
Target Start/End: Original strand, 21882759 - 21882905
Alignment:
Q  230 aagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattgagac 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||  |||||     
T  21882759 aagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccggcaaataacaaatttaattggctgagat 21882858  T
Q  330 attttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
     ||||||| || ||||||| |||||| |||||||| |||||| ||||    
T  21882859 cttttcttaatcaattcttcataaaatctctctagataaatagcaat 21882905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 198 - 371
Target Start/End: Complemental strand, 20125740 - 20125567
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatt 297  Q
    ||||||| ||||||||| ||||||| |||||||||||||||| ||||||||||||||||||| || |||| ||||||||||||||||| || | || |||    
T  20125740 gggaaatgatagatacaatgacaaattttatcaagaaaatttgaagacagtgtatttgctaatacctttctttaattacacaccattatcttctttaatt 20125641  T
Q  298 tccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaata 371  Q
    || | ||  |||||||||||||||  ||| ||||||||||||| |||||||||||||| |||||||| ||||||    
T  20125640 tctgacaagtaacaaatttaattggctgacacattttcttgatcaattcttgataaaacctctctagataaata 20125567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 219 - 376
Target Start/End: Complemental strand, 22631609 - 22631452
Alignment:
Q  219 caaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaa 318  Q
    |||| |||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| |||| |||| |||||||||| || |||||||||||||    
T  22631609 caaactttatcaagaaaatttcaagacggtgtattagctaacacctttccttaattacacactattatctcctttgatttccgacaaataacaaatttaa 22631510  T
Q  319 ttgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    |||  |||||  |||||||||| ||||||| ||||||  ||| ||| |||||||||||    
T  22631509 ttggctgagatcttttcttgatcaattcttaataaaatatctttagataaataacaat 22631452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 250 - 371
Target Start/End: Complemental strand, 46297711 - 46297590
Alignment:
Q  250 tatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttg 349  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||| || || |||||||||| || ||  ||||||||||||||||||||||||||    
T  46297711 tatttgctaacacatttccttaattacacaccattaactcccttgattttcgacaaataacaaattaaaatggctgagacattttcttgataaattcttg 46297612  T
Q  350 ataaaaactctctaggtaaata 371  Q
    ||||||||||||||| ||||||    
T  46297611 ataaaaactctctagataaata 46297590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 197 - 376
Target Start/End: Complemental strand, 8123842 - 8123663
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgat 296  Q
    |||||||| ||||||| ||| ||||||| |||| ||||||||| | ||| || ||||||||||||| |||| ||||||| |||  |||| |||| || ||    
T  8123842 agggaaatgatagatatagtaacaaaatgtatccagaaaattttaggacggtatatttgctaacacctttctttaattatacattattatctccattaat 8123743  T
Q  297 ttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    ||||  || ||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||| |||||| ||||    
T  8123742 ttccaacaaataacaaatttaattgactgagacattttcttgatcaattcatgataaaatctctctagataaatagcaat 8123663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 226 - 331
Target Start/End: Complemental strand, 1985128 - 1985023
Alignment:
Q  226 tatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattg 325  Q
    |||||||||||||| |||| ||||||||||||||||| |||||||||||||| |||||||||| |||||||||||| || ||||||||||||||||  ||    
T  1985128 tatcaagaaaattttaagatagtgtatttgctaacacatttccttaattacataccattaccttccttgatttccggcaaataacaaatttaattggctg 1985029  T
Q  326 agacat 331  Q
    ||||||    
T  1985028 agacat 1985023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 38 - 171
Target Start/End: Original strand, 11561368 - 11561500
Alignment:
Q  38 tgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaattccagcgtgagttaagtt 137  Q
    ||||||||||||||||| | ||||| ||||||||||||||| || ||||| | |  |||||||||||||   |||  |||||| || |||||||||||||    
T  11561368 tgaacttcccaaaatatccttgcgttagttaactcacgcaagtgctaatttcaat-gtgagttaactcaggaaagtgttaatttcaacgtgagttaagtt 11561466  T
Q  138 gcgcagcgcatgttaagatgcgcagattttaaca 171  Q
    ||||||||||||||||||||||||||||||||||    
T  11561467 gcgcagcgcatgttaagatgcgcagattttaaca 11561500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 33 - 172
Target Start/End: Complemental strand, 9384746 - 9384608
Alignment:
Q  33 ccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaattccagcgtgagtt 132  Q
    |||||||||||| ||||||||    ||||| |||||||||||| || |||||||||| |||||||||||||| |  ||||  |||||| ||| |||||||    
T  9384746 ccaactgaactttccaaaatacctctgcgtaagttaactcacgtaattgttaattcc-agcgtgagttaactaaggcaagtgttaatttcagtgtgagtt 9384648  T
Q  133 aagttgcgcagcgcatgttaagatgcgcagattttaacac 172  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  9384647 aagttgcgcagcacatgttaagatgcgcatattttaacac 9384608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 43466823 - 43466693
Alignment:
Q  59 gcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgc 158  Q
    ||||| |||||||| |  || |||||||| | ||| |||||||||||| |||||  |||||| |||||||||||||||| | ||| |||| |||||||||    
T  43466823 gcgtgggttaactcccataagtgttaatttctagcctgagttaactcacacaagtattaatttcagcgtgagttaagttccacagtgcatattaagatgc 43466724  T
Q  159 gcagattttaacacttgcgttacttaactaa 189  Q
    ||||||||||||||||| |||||||||||||    
T  43466723 gcagattttaacacttgtgttacttaactaa 43466693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 198 - 371
Target Start/End: Complemental strand, 19511560 - 19511387
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatt 297  Q
    ||||||| |||||| |||||| ||| |||||||| |||||||| |||||||||||||  |||||| ||||||||||||| ||| |||| |||| ||||||    
T  19511560 gggaaatgatagatgcagtgataaattttatcaaaaaaatttcgagacagtgtatttattaacacctttccttaattactcactattatctccattgatt 19511461  T
Q  298 tccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaata 371  Q
    |||   | |||| |||||||||||  | | || ||||||| || |||||||||||||| ||||| || ||||||    
T  19511460 tccaaaaaataataaatttaattggctaaaactttttcttaatcaattcttgataaaatctctcgagataaata 19511387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 242 - 382
Target Start/End: Original strand, 23730507 - 23730645
Alignment:
Q  242 agacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattgagacattttcttgata 341  Q
    |||||||||||||| |||||| |||||||||||||||  ||||||||| ||||||||||| || ||||| |||||||||   ||| || ||||||||||     
T  23730507 agacagtgtatttgttaacacctttccttaattacac--cattacctctcttgatttccgacaaataacgaatttaatttgctgaaacgttttcttgatc 23730604  T
Q  342 aattcttgataaaaactctctaggtaaataacaatcttcat 382  Q
    |||||||||||||| |||||| | |||||| |||| |||||    
T  23730605 aattcttgataaaatctctctcgataaatagcaatgttcat 23730645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 197 - 360
Target Start/End: Original strand, 24250417 - 24250574
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgat 296  Q
    |||||||| || |||||||||||||| |||||||      ||||||||||| |||||| |||| |  ||| |||||||||| ||||||||||||||||||    
T  24250417 agggaaatgattgatacagtgacaaattttatca------tttcaagacagcgtatttactaatatcttttcttaattacaaaccattacctcccttgat 24250510  T
Q  297 ttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactct 360  Q
    ||||| || |||||||||| |||||  | |||  |||||||||| |||||||||||||| ||||    
T  24250511 ttccgacaaataacaaattaaattggataagatcttttcttgatcaattcttgataaaatctct 24250574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 239 - 360
Target Start/End: Complemental strand, 44601109 - 44600996
Alignment:
Q  239 tcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattgagacattttcttg 338  Q
    |||||||||||||||||||||||| ||| |||||||||||| ||||| ||||||        |||| ||||||||||||||||||||| ||||||||||     
T  44601109 tcaagacagtgtatttgctaacacattttcttaattacacatcattatctccct--------gccaaataacaaatttaattgattgaaacattttctta 44601018  T
Q  339 ataaattcttgataaaaactct 360  Q
      ||||||||||||||||||||    
T  44601017 tcaaattcttgataaaaactct 44600996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 2377160 - 2377264
Alignment:
Q  1 tctgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcccagcgtgagtt 100  Q
    |||||| |||||||| ||||||||| |||  || |||  ||||||||||||||  | |||||||||||||||||||||||||| || | |||| ||||||    
T  2377160 tctgctcttctcccatcacattttgctcgcttcaaaccaaacttcccaaaatacccctgcgtgagttaactcacgcaaatgtt-atactcagcatgagtt 2377258  T
Q  101 aactca 106  Q
    ||||||    
T  2377259 aactca 2377264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 77
Target Start/End: Original strand, 47664519 - 47664593
Alignment:
Q  3 tgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgca 77  Q
    |||| |||| ||| || |||||| |||| | ||||| |||||||||||||| ||| |||||||||||||||||||    
T  47664519 tgctcttcttccatcatattttgctcgttttcaactaaacttcccaaaatactcaagcgtgagttaactcacgca 47664593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 31589463 - 31589507
Alignment:
Q  33 ccaactgaacttcccaaaatattcatgcgtgagttaactcacgca 77  Q
    |||||||||||||||||||||  |||||||||||||| |||||||    
T  31589463 ccaactgaacttcccaaaatacccatgcgtgagttaagtcacgca 31589507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 15127564 - 15127604
Alignment:
Q  214 agtgacaaaatttatcaagaaaatttcaagacagtgtattt 254  Q
    |||||||| || |||||||||||||| ||||||||||||||    
T  15127564 agtgacaagatgtatcaagaaaattttaagacagtgtattt 15127604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 23284773 - 23284820
Alignment:
Q  59 gcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcat 107  Q
    |||||||||||||||||||  |||||||| |||||||||||||| ||||    
T  23284773 gcgtgagttaactcacgcaggtgttaatt-ccagcgtgagttaaatcat 23284820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 201 - 382
Target Start/End: Original strand, 42504155 - 42504333
Alignment:
Q  201 aaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttcc 300  Q
    |||| ||||||||| ||||||||| |||||||||||||| ||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||    
T  42504155 aaatgatagatacaatgacaaaatgtatcaagaaaattttaagacagtgtatttgttaacacctttccttaattacacatcattacctcccttgatttcc 42504254  T
Q  301 gccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaatcttcat 382  Q
    | || |||||||||||||||| |||| |  |||||||||| |||||   ||||||||||||||| |||||| |||| |||||    
T  42504255 ggcaaataacaaatttaattggttgaaatcttttcttgatcaattc---ataaaaactctctagataaatagcaatgttcat 42504333  T

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Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 199 - 376
Target Start/End: Complemental strand, 37762956 - 37762777
Alignment:
Q  199 ggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgattt 298  Q
    |||||| ||||||| |||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||  ||| |||| ||    
T  37762956 ggaaatgatagatagagtgacaaaatttatcaaaaaaatttcaagacaatgtatttgttaacacttttccttaattacacatcattatttcctttgactt 37762857  T
Q  299 ccgccagataacaaatttaattgat--tgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
     || || |||||||||||||||| |  || | ||||||||||||||||||||||| |||||||| ||| |||||| ||||    
T  37762856 tcgtcaaataacaaatttaattggttgtgtggcattttcttgataaattcttgatgaaaactctttagataaatagcaat 37762777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 198 - 363
Target Start/End: Complemental strand, 5288672 - 5288507
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatt 297  Q
    ||||||| ||||||| ||||||||| | |||||||||| ||||||||| || ||||||||||||| |||  ||||||||||||||||| |||||||||||    
T  5288672 gggaaatgatagatagagtgacaaactgtatcaagaaagtttcaagacggtatatttgctaacacatttttttaattacacaccattatctcccttgatt 5288573  T
Q  298 tccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctcta 363  Q
    | || || ||||||||||||||||  |||||||||||||| || ||||||| |||||| |||||||    
T  5288572 tacggcaaataacaaatttaattggctgagacattttcttaatcaattcttaataaaatctctcta 5288507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 230 - 376
Target Start/End: Complemental strand, 24060694 - 24060548
Alignment:
Q  230 aagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattgagac 329  Q
    |||||||||| || ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||   |  |||||||||||||||   | ||||    
T  24060694 aagaaaattttaaaacagtgtatttgctaacacatttccttaattacacaccattatctcccttgatttctaaccaataacaaatttaattagcttagac 24060595  T
Q  330 attttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    ||||||||||| ||||||||||||||| ||| ||| |||||||||||    
T  24060594 attttcttgatcaattcttgataaaaattctttagataaataacaat 24060548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 257 - 376
Target Start/End: Complemental strand, 19482609 - 19482490
Alignment:
Q  257 taacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaa 356  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| | ||||||||||||||||||| |  ||||    
T  19482609 taacacctttccttaattacacaccattacttcccttgatttccgccaaataacaaatttaattggttgaaaaattttcttgataaattcttaaataaaa 19482510  T
Q  357 ctctctaggtaaataacaat 376  Q
    |||||||| |||||| ||||    
T  19482509 ctctctagataaatagcaat 19482490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 209 - 321
Target Start/End: Complemental strand, 30220838 - 30220727
Alignment:
Q  209 gatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagata 308  Q
    ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |  |||    
T  30220838 gatacggtgacaaaatgtatcaagaaaattttaagacagtgtatttgctaacacttttccttaattacacaccaata-ctcccttgatttccggccaata 30220740  T
Q  309 acaaatttaattg 321  Q
    ||||| |||||||    
T  30220739 acaaaattaattg 30220727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 249 - 371
Target Start/End: Complemental strand, 41545514 - 41545392
Alignment:
Q  249 gtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattgagacattttcttgataaattctt 348  Q
    |||||||||||||| |||| |||||||||||| ||||||| | | |||||| |||| |||||||||||||||| ||||| | ||||||||||||||||||    
T  41545514 gtatttgctaacacctttcattaattacacacaattaccttcttcgatttctgccaaataacaaatttaattggttgaggccttttcttgataaattctt 41545415  T
Q  349 gataaaaactctctaggtaaata 371  Q
    |||  ||||||||||| ||||||    
T  41545414 gatggaaactctctagataaata 41545392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 256 - 364
Target Start/End: Complemental strand, 25817757 - 25817649
Alignment:
Q  256 ctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaa 355  Q
    ||||||| ||| |||||||||||||||||||||| ||||||||||| || ||||||||||||||||  |||||| |||||||||| ||||||||||||||    
T  25817757 ctaacacattttcttaattacacaccattacctcacttgatttccgtcaaataacaaatttaattggctgagaccttttcttgatcaattcttgataaaa 25817658  T
Q  356 actctctag 364  Q
      |||||||    
T  25817657 tgtctctag 25817649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 239 - 343
Target Start/End: Original strand, 29065277 - 29065381
Alignment:
Q  239 tcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattgagacattttcttg 338  Q
    ||||||| ||| ||| | |||||| |||| |||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||| ||||||||    
T  29065277 tcaagacggtgcattagttaacacctttctttaattacacaccattacctccattgatttccgtcaaataacaaatttaattgattgagactttttcttg 29065376  T
Q  339 ataaa 343  Q
    |||||    
T  29065377 ataaa 29065381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 198 - 376
Target Start/End: Complemental strand, 16528716 - 16528535
Alignment:
Q  198 gggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccat---tacctcccttg 294  Q
    ||||||| |||||||||| ||||| || |||||||||||||| |||| |||||||||| |||||| |||| |||||||||||||||   ||  ||  |||    
T  16528716 gggaaatgatagatacagcgacaacatgtatcaagaaaattttaagatagtgtatttgttaacacatttctttaattacacaccattaatatatcatttg 16528617  T
Q  295 atttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    ||||||| || ||||||||||||||||  |||||| || | ||||| ||||||  |||||| |||||||| |||||| ||||    
T  16528616 atttccgacaaataacaaatttaattggctgagaccttctattgatcaattctaaataaaatctctctagataaatagcaat 16528535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 92 - 190
Target Start/End: Original strand, 46844623 - 46844721
Alignment:
Q  92 gcgtgagttaactcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgcgcagattttaacacttgcgttacttaactaat 190  Q
    |||||||||||||||  ||||  |||||| || ||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  46844623 gcgtgagttaactcacgcaagtgttaatttcaacgtgagttaagttgcgcagcgcatgttaagatgtgcagattttaacatctgcgttacttaactaat 46844721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 241 - 373
Target Start/End: Original strand, 51304300 - 51304431
Alignment:
Q  241 aagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattgagacattttcttgat 340  Q
    |||||| ||||||||||||||  |||  |||||| ||| |||||| |||| |||||||||| || |||||||||||||||||||| || |||||||| ||    
T  51304300 aagacaatgtatttgctaacatatttttttaattgcacgccattatctcctttgatttccgtcaaataacaaatttaattgattgtgatattttctt-at 51304398  T
Q  341 aaattcttgataaaaactctctaggtaaataac 373  Q
    | |||||| ||||||||||||||| ||||||||    
T  51304399 atattcttaataaaaactctctagataaataac 51304431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 58 - 187
Target Start/End: Complemental strand, 5314441 - 5314312
Alignment:
Q  58 tgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaatt-ccagcgtgagttaagttgcgcagcgcatgttaagat 156  Q
    ||||||||||||||||||||| |||||||||| ||||||| ||||||||  ||||  |||||| ||||||| |||||||||||| ||| |||||||||      
T  5314441 tgcgtgagttaactcacgcaagtgttaattcc-agcgtgaattaactcacgcaagtgttaatttccagcgtaagttaagttgcgtagctcatgttaagta 5314343  T
Q  157 gcgcagattttaacacttgcgttacttaact 187  Q
     ||||||||||||||| ||||| | ||||||    
T  5314342 acgcagattttaacacctgcgtgagttaact 5314312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 197 - 293
Target Start/End: Complemental strand, 19663433 - 19663341
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctccctt 293  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||     || ||| |||||||||||| |||||||||||||    
T  19663433 agggaaatgatagatacagtgacaaaatttatcaagaaaattttaagagagtgtatttg----taccttttcttaattacacatcattacctccctt 19663341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 19482864 - 19482799
Alignment:
Q  197 agggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacac 262  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  19482864 agggaaaatatagatacagtgacaaaatttatcaagaaaatttcaagacagtttatttgttaacac 19482799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 185
Target Start/End: Complemental strand, 45682857 - 45682765
Alignment:
Q  93 cgtgagttaactcatacaagatttaattccagcgtgagttaagttgcgcagcgcatgttaagatgcgcagattttaacacttgcgttacttaa 185  Q
    ||||||||||||||  ||||  ||||||||| ||||||||||||||| || |  ||||||||||| |||||||||||||||||| ||| ||||    
T  45682857 cgtgagttaactcaggcaagtgttaattccaacgtgagttaagttgcacaacatatgttaagatgggcagattttaacacttgcattagttaa 45682765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 46844572 - 46844651
Alignment:
Q  8 ttctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaatt 87  Q
    |||||| | ||||||||||||| | | |||||||||||  ||||||| ||||||||||||||||||||||| ||||||||    
T  46844572 ttctcctagcacattttgttcgcggcaaactgaacttcttaaaatatccatgcgtgagttaactcacgcaagtgttaatt 46844651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 19663274 - 19663335
Alignment:
Q  201 aaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacac 262  Q
    |||| ||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||||    
T  19663274 aaatgatagatacagtgacaaaatttataaaaaaaatgtcaagacagtgtatttgttaacac 19663335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 23811393 - 23811319
Alignment:
Q  58 tgcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaattccagcgtgagttaa 134  Q
    |||||||| |||||||||||| |||||||| ||||||||||||||||||  |||| ||||||| |||||||||||||    
T  23811393 tgcgtgagataactcacgcaagtgttaatt-ccagcgtgagttaactcacgcaag-tttaattacagcgtgagttaa 23811319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 361
Target Start/End: Original strand, 2765339 - 2765489
Alignment:
Q  209 gatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgct-aacacttttccttaattacacaccattacctcccttgatttccgccagat 307  Q
    |||| ||||||||||| |||||| ||   ||||||||| |||||||  | ||||| |||| ||||||||||| ||||| ||||| ||||||  | |  ||    
T  2765339 gatatagtgacaaaatgtatcaaaaa---ttcaagacactgtatttttttaacacctttcattaattacacatcattatctcccatgatttttggccaat 2765435  T
Q  308 aacaaatttaattgattgagacattttcttgataaattcttgataaaaactctc 361  Q
    ||||||||||||||  | |||| |||||||||| || |||| ||||||||||||    
T  2765436 aacaaatttaattggcttagaccttttcttgatcaactcttaataaaaactctc 2765489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 268 - 369
Target Start/End: Complemental strand, 41485817 - 41485716
Alignment:
Q  268 cttaattacacaccattacctcccttgatttcc-gccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggt 366  Q
    ||||||||||| |||||||||||||| |||||| |||||   | |||||||||||  | | || |||||||||| ||||||||||||||||||||||| |    
T  41485817 cttaattacaccccattacctcccttaatttcctgccagcaga-aaatttaattggcttaaaccttttcttgatcaattcttgataaaaactctctagat 41485719  T
Q  367 aaa 369  Q
    |||    
T  41485718 aaa 41485716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 375
Target Start/End: Original strand, 42108752 - 42108821
Alignment:
Q  306 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctctaggtaaataacaa 375  Q
    ||||||||||||||||  ||| || |||||||||| ||||||||||||||| | ||||| ||||||||||    
T  42108752 ataacaaatttaattggctgaaactttttcttgatcaattcttgataaaaaatttctagataaataacaa 42108821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 361
Target Start/End: Complemental strand, 13218497 - 13218442
Alignment:
Q  306 ataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctc 361  Q
    |||||||||||||||||  ||||| ||||||| ||||||| || ||||||||||||    
T  13218497 ataacaaatttaattgaccgagaccttttcttaataaatttttaataaaaactctc 13218442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 20394077 - 20394123
Alignment:
Q  59 gcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactca 106  Q
    ||||||||||||||||||| ||||||||| || |||||||||||||||    
T  20394077 gcgtgagttaactcacgcagatgttaatt-ccggcgtgagttaactca 20394123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 10011753 - 10011691
Alignment:
Q  12 cccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcac 74  Q
    |||||||||||||| ||| ||||||||||| | || |||||| || ||| |||||||||||||    
T  10011753 cccaacacattttgctcgcgtccaactgaaataccgaaaatactcctgcatgagttaactcac 10011691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 10018894 - 10018832
Alignment:
Q  12 cccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcac 74  Q
    |||||||||||||| ||| ||||||||||| | || |||||| || ||| |||||||||||||    
T  10018894 cccaacacattttgctcgcgtccaactgaaataccgaaaatactcctgcatgagttaactcac 10018832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 10011605 - 10011650
Alignment:
Q  38 tgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgtt 83  Q
    |||||||||||||||| || ||| ||||||||||||||||| ||||    
T  10011605 tgaacttcccaaaatactcctgcatgagttaactcacgcaagtgtt 10011650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 10018746 - 10018791
Alignment:
Q  38 tgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgtt 83  Q
    |||||||||||||||| || ||| ||||||||||||||||| ||||    
T  10018746 tgaacttcccaaaatactcctgcatgagttaactcacgcaagtgtt 10018791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 23811360 - 23811277
Alignment:
Q  59 gcgtgagttaactcacgcaaatgttaattcccagcgtgagttaactcatacaagatttaa-ttccagcgtgagttaagttgcgcag 143  Q
    |||||||||||||||||||| | |||||| | |||||||||||||||| |||||  |||| ||||   ||||||||||||||||||    
T  23811360 gcgtgagttaactcacgcaagt-ttaattac-agcgtgagttaactcacacaagtgttaatttccgatgtgagttaagttgcgcag 23811277  T

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Target: scaffold0194 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 194 - 311
Target Start/End: Original strand, 27063 - 27180
Alignment:
Q  194 gatagggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctccctt 293  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| | |||| |||||||    
T  27063 gatagggaaatgatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgttaacacctttccttaattacactctattatctccctt 27162  T
Q  294 gatttccgccagataaca 311  Q
    ||||||||||| ||||||    
T  27163 gatttccgccaaataaca 27180  T

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Target: scaffold0122 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 233 - 376
Target Start/End: Complemental strand, 18749 - 18606
Alignment:
Q  233 aaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattgagacatt 332  Q
    |||| ||||| ||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||| || || ||||||||||||||||| | |||| ||    
T  18749 aaaaattcaaaacagtgtatttgctaacacatttccttaattactcaccattatctcccttaattttcgacaaataacaaatttaattgactaagacttt 18650  T
Q  333 ttcttgataaattcttgataaaaactctctaggtaaataacaat 376  Q
    |||||||| ||||||| |||||| |||| ||| |||||| ||||    
T  18649 ttcttgatcaattcttaataaaatctctttagataaatagcaat 18606  T

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Target: scaffold0018 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 69949 - 70059
Alignment:
Q  264 tttccttaattacacaccattacctcccttgatttccgccagataacaaatttaattgattgagacattttcttgataaattcttgataaaaactctcta 363  Q
    ||||||||||||||| |||||| ||||||||||||||| |  ||||||||||||||||  ||| || |||||||||| |||| | |||||||||||||||    
T  69949 tttccttaattacaccccattatctcccttgatttccggccaataacaaatttaattggctgaaaccttttcttgatcaattttagataaaaactctcta 70048  T
Q  364 ggtaaataaca 374  Q
    | |||||||||    
T  70049 gataaataaca 70059  T

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Target: scaffold0011 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 12626 - 12538
Alignment:
Q  1 tctgctattctcccaacacattttgttcgtgtccaactgaacttcccaaaatattcatgcgtgagttaactcacgcaaatgttaattcc 89  Q
    |||||| ||| || |||||||||| |||| | |||||||||||||||||||||| | |||||||||||||||||||||||| |||||||    
T  12626 tctgctcttccccgaacacattttattcgcgcccaactgaacttcccaaaatatccttgcgtgagttaactcacgcaaatgctaattcc 12538  T

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Target: scaffold0011; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 12529 - 12471
Alignment:
Q  131 ttaagttgcgcagcgcatgttaagatgcgcagattttaacacttgcgttacttaactaa 189  Q
    ||||||||| || ||||||||||||| || |||||||||||| ||  ||||||||||||    
T  12529 ttaagttgcacaacgcatgttaagattcgtagattttaacacatgtattacttaactaa 12471  T

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Target: scaffold0247 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 318
Target Start/End: Complemental strand, 19339 - 19220
Alignment:
Q  199 ggaaataatagatacagtgacaaaatttatcaagaaaatttcaagacagtgtatttgctaacacttttccttaattacacaccattacctcccttgattt 298  Q
    |||||| |||||||  ||||  |||||||| |||||||||| ||| | ||||||||| ||| || |||  ||||  |||||| ||||||||| |||||||    
T  19339 ggaaatgatagatattgtgatcaaatttattaagaaaattttaagtctgtgtatttgttaatacctttttttaacgacacactattacctcctttgattt 19240  T
Q  299 ccgccagataacaaatttaa 318  Q
    ||| || |||||||||||||    
T  19239 ccgtcaaataacaaatttaa 19220  T

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Target: scaffold0260 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 20557 - 20513
Alignment:
Q  33 ccaactgaacttcccaaaatattcatgcgtgagttaactcacgca 77  Q
    ||||||||||||||||||||| || || |||||||||||||||||    
T  20557 ccaactgaacttcccaaaatactcctgtgtgagttaactcacgca 20513  T

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